| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is 77460601
Identifier: 77460601
GI number: 77460601
Start: 4936904
End: 4937500
Strand: Direct
Name: 77460601
Synonym: Pfl01_4380
Alternate gene names: NA
Gene position: 4936904-4937500 (Clockwise)
Preceding gene: 77460600
Following gene: 77460602
Centisome position: 76.68
GC content: 63.82
Gene sequence:
>597_bases ATGAGCACCCCGGAAAAAGCCCTGCGTTCGCAACGCCTGAACCAGATCACCCACGAGCCGCACAGCAAGCTCGATGCGCT GGTCAAGGCCCACGCGCCGTTCGAGACCCGCGCCAATTTCGCCCGCTTCGTGGTTGCGCAATACCTGTTCCAGTCGGAGC TGGTGTCGCTGTACAACGATGCCGAACTGACCGCTATCGTCCCTGACCTGCCGGCCCGCTGCCGCGCCGAAGCCGCCAGG GCCGACCTCGCCGACCTCGACACCGAAGTGCCTGCGCCAGTCGCCGGCGCGGTGAAAAACCCGAGCAAGGCCCGCGCCCT CGGCTGGATTTTCGTGTCCGAGGGTTCAAAGCTTGGCGCTGCGTTCCTGATCAAACGCGCGGTGGCGCTGGACCTGAGCG AAACCTTTGGCGCCCGTCATCTGGGCGAACCTGAAGGCGGTCGTGCCGAAGGCTGGAAGAGCTTTGTACGCACCCTCGAT TCGCTGCAATTCAGCGCTGAAGAGGAAGCCGAAGTGGAGCAAGGCGCGATCGACGCGTTCAACCGCTTCACCGTGTTGCT GGAACAGGCTTACTCGACTGAAGCCGAACCGGCCTGA
Upstream 100 bases:
>100_bases CCTCACGGCGCGCGCATGGCCGCGCCGTGAGGTTTTTTTACTGTCCGGCGCTTGCCCGTACGTCTCGTTATCAAGCGCCT CTTCTTTTCAAGGACATCTC
Downstream 100 bases:
>100_bases TTGCTTAATTCCTGTGGAAGCCTGGCTTCCACAGGGAACTGCATAAGCCTGTAAGATTCCCATCCCGCTTCATAAGTCTC TCGCTGAGCCCATGCCCCAA
Product: Heme oxygenase
Products: NA
Alternate protein names: Haem Utilisation Protein; Heme Oxygenase Family Protein; Iron-Starvation Protein; Iron-Starvation Protein PigA; Heme Oxygenase Superfamily; Heme Oxygenase-Like Protein
Number of amino acids: Translated: 198; Mature: 197
Protein sequence:
>198_residues MSTPEKALRSQRLNQITHEPHSKLDALVKAHAPFETRANFARFVVAQYLFQSELVSLYNDAELTAIVPDLPARCRAEAAR ADLADLDTEVPAPVAGAVKNPSKARALGWIFVSEGSKLGAAFLIKRAVALDLSETFGARHLGEPEGGRAEGWKSFVRTLD SLQFSAEEEAEVEQGAIDAFNRFTVLLEQAYSTEAEPA
Sequences:
>Translated_198_residues MSTPEKALRSQRLNQITHEPHSKLDALVKAHAPFETRANFARFVVAQYLFQSELVSLYNDAELTAIVPDLPARCRAEAAR ADLADLDTEVPAPVAGAVKNPSKARALGWIFVSEGSKLGAAFLIKRAVALDLSETFGARHLGEPEGGRAEGWKSFVRTLD SLQFSAEEEAEVEQGAIDAFNRFTVLLEQAYSTEAEPA >Mature_197_residues STPEKALRSQRLNQITHEPHSKLDALVKAHAPFETRANFARFVVAQYLFQSELVSLYNDAELTAIVPDLPARCRAEAARA DLADLDTEVPAPVAGAVKNPSKARALGWIFVSEGSKLGAAFLIKRAVALDLSETFGARHLGEPEGGRAEGWKSFVRTLDS LQFSAEEEAEVEQGAIDAFNRFTVLLEQAYSTEAEPA
Specific function: Unknown
COG id: COG3230
COG function: function code P; Heme oxygenase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21583; Mature: 21452
Theoretical pI: Translated: 4.84; Mature: 4.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTPEKALRSQRLNQITHEPHSKLDALVKAHAPFETRANFARFVVAQYLFQSELVSLYND CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC AELTAIVPDLPARCRAEAARADLADLDTEVPAPVAGAVKNPSKARALGWIFVSEGSKLGA CCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCHHHHHEEEEEECCCCCHHH AFLIKRAVALDLSETFGARHLGEPEGGRAEGWKSFVRTLDSLQFSAEEEAEVEQGAIDAF HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH NRFTVLLEQAYSTEAEPA HHHHHHHHHHHCCCCCCC >Mature Secondary Structure STPEKALRSQRLNQITHEPHSKLDALVKAHAPFETRANFARFVVAQYLFQSELVSLYND CCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC AELTAIVPDLPARCRAEAARADLADLDTEVPAPVAGAVKNPSKARALGWIFVSEGSKLGA CCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCHHHHHEEEEEECCCCCHHH AFLIKRAVALDLSETFGARHLGEPEGGRAEGWKSFVRTLDSLQFSAEEEAEVEQGAIDAF HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH NRFTVLLEQAYSTEAEPA HHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA