| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is hpuB [H]
Identifier: 77460600
GI number: 77460600
Start: 4934209
End: 4936794
Strand: Direct
Name: hpuB [H]
Synonym: Pfl01_4379
Alternate gene names: 77460600
Gene position: 4934209-4936794 (Clockwise)
Preceding gene: 77460599
Following gene: 77460601
Centisome position: 76.64
GC content: 62.1
Gene sequence:
>2586_bases ATGTCCTCTCGCCTTACCCGCCAGACTTCTTCCCCTTCCCGCGTGCTGTCGCTGCTGACCGCCGCCATTCTGATGGCCGG CACCGCGCCGCTGATGGCCGCCACCGAACAGCCGACGCGCAACATGGGCGACTACTCGTTCGCCATTCCCCAGCAGCCGC TGGTGTCGGCGCTCAATGCGTTCACCGCGGTCACCGGCTGGCAGGTCGGTTTGCCGGCGGAACTGGGTCAGGATGTGTCG TCGCCGGGCGTGCGCGGTTCGCTGCCACCGGAAAAAGCCCTGGAGCGCCTGTTGGTGGGGACCAACCTGAGCTTCCGCAA ACTGAGCAACAACAACGTCGTGCTGGAAAAACGCGCCAGCAGCGGCGCACTCAATCTTGATCAGGTGACCATCAGCGCCA CCCGTCAGGAACAGTCGATCAACAGCGTGCCGGCCACCGTCACCGTACAGACCCGTCAGGATCTGGACCGCAACAACGTC AACACCATCAAGGATCTGGTGCGCTACGAGCCGGGCGTGTCCGTCGGCGGCGCCGGCCAGCGCGGCGGGATCAGCGGCTA CAACATTCGCGGCATCGACGGCGACCGCATCCTGACTCAGGTCGACGGCGTCGAAGTGCCGGACGGTTTCTTCAATGGCC CTTACGCCAAGACCCAGCGCAATTACGTTGACCCGGAAATCGTCAAGCGCGTCGAAATCCTCCGTGGCCCAGCCTCGGTG CTGTACGGCAGCAACGCCATCGGCGGCGCGGTCAGCTACTACACCCTCGACCCGGACGACATCATCAAGCCCGGCAAAGA CGTCGGCGCCCGCCTGAAAACCGGCTACAGCTCTGCCGACGAGAGCTGGCTGAAATCCGCCACCGTCGCCGGTCGCGCCG ACCAGTTCGACGGCTTGCTGCACTACAGCCAGCGCGACGGTCATGAAACCGATTCCTACGGCAGCAACAACGGCACGGGC CTGGAACGCACCGCCGCCAACCCGGAAGACGTGAAAGCCACTAACGTGCTGGCCAAGATCGGCTGGAACTACAACGAAGG TTCGCGCCTGGGCCTGACCTACGAAAAGTACAAGGATGATCGCGACACCGATCAGAAAAGCGCCTACGGCGGCCCGTACT TCAACGGTGCTCCGACGATCCCGAACAGCGTGCTGCCCGGCGGCATGTACCAGTGGCGCACCGGCAACGACACCATCACC CGCGAGCGTTTCGGCCTGGAGCACAGCTTCGAGCTCGACAGCCTGCTGGCGGACAACGTGAAGTGGAGCCTCAACCACCA GACCGCCAAGACCGACCAGAGCACCGACGAGTTCTATTACCCGATCACTCGTAAAGTCCTGCGCACCCGCGACACGATCT ACGAAGAAAAACAGTGGGTCTTCGACGCGCAACTGGACAAGGCATTCGCCATCGGTGACACCGATCACGTGCTGACCTAC GGCACCACGATCAAGCAGCAGAAAGTCACCGGCTCGCGCAGCGGCGACGGCAAGTGCCTGGCGGTCGGTCGCGGCTGCAC CGCCATCGGCGCTACCAGCGCAGCCGACGTGCTGAAAAAGTCCAGCGACTTCCCGGACCCGACCATCAACACCTACAGCC TGTTCGCCCAGGATCAGATCAGCTGGAACAACTGGACCTTCCTGCCGGGCCTGCGCTACGACTACACCCAGCTCAAGCCG CACATCACCCAGGAATTCCTCAACACCGTGGCCGCCGACGGTAATGGCACGGTCAGTGATTCGAACAAGACATGGCATAA AGTCTCGCCGAAATTCGGCCTGACCTACGCCCTGACCGAAAACTACACCTGGTACGGTCAGTACGCCGAAGGCTTCCGCA CCCCGACCGCGAAAGCCCTGTACGGCCGCTTCGAGAACAGCACCACCGGCTACAACGTGGCACCGAACCCGGACCTGGAG CCGGAAAAGAGCAAAAGCTATGAAACCGGCCTGCGCGGCAACTTCGAGCAAGGCTCGTTCGACGTGGCGGTGTTCTATAA CAAGTACCGCGACTTCATCAACGAAGACGCCGTCACCCCTGGCTACGACGAGCTGACCTTCCAGTCGAGCAACATCAAGC ACGCCACCATCAAGGGTGCCGAAGTCAAAGGTCGTCTGAACCTCGATTCCTTCGGCGCGCCGCAAGGCCTGTATACCCAG GGTTCGATCTCCTACGCCTACGGACGCAACAACGACAACGGCGAGCCGTTGAACAGCGTCAACCCGCTGACCGGCGTGTT CGGCCTCGGTTACGACCAGGACAACTACGGCGGCCTGCTGAGCTGGACCGTGGTCAAGAAGAAGGATCGCGTCGACGACA GCAACTTCAAATCGCCGGACGGGGTCAGCAGTCAGTTCAAGACTCCGGGCTTCGGCATTCTCGATCTGGCCGGTTATTAC AAGGTCACCGACGACGTCACCGTCAGCGGCGGCATCTACAACCTGACCGACAAGAAATACTGGCTGTGGGATGACGTGCG CGGTTACGACAGCGTCGGCGAAGCGTCGGTGACACAACCGGCCAACCTCGATCGCCTGACCCAGCCGGGTCGCAACTTCG CGATCAATCTGGTCTGGGATATCTGA
Upstream 100 bases:
>100_bases AGCCAAAGCTCGTTCGTCTCGTTATAGCCAATGCAATTGATTCGCATCTCGCGAGATCAATCAGCACCTATAAAGATTCG TGCGACACGGAGCGCTATCG
Downstream 100 bases:
>100_bases TCCGGATGACCTCACGGCGCGCGCATGGCCGCGCCGTGAGGTTTTTTTACTGTCCGGCGCTTGCCCGTACGTCTCGTTAT CAAGCGCCTCTTCTTTTCAA
Product: TonB-dependent hemoglobin/transferrin/lactoferrin receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 861; Mature: 860
Protein sequence:
>861_residues MSSRLTRQTSSPSRVLSLLTAAILMAGTAPLMAATEQPTRNMGDYSFAIPQQPLVSALNAFTAVTGWQVGLPAELGQDVS SPGVRGSLPPEKALERLLVGTNLSFRKLSNNNVVLEKRASSGALNLDQVTISATRQEQSINSVPATVTVQTRQDLDRNNV NTIKDLVRYEPGVSVGGAGQRGGISGYNIRGIDGDRILTQVDGVEVPDGFFNGPYAKTQRNYVDPEIVKRVEILRGPASV LYGSNAIGGAVSYYTLDPDDIIKPGKDVGARLKTGYSSADESWLKSATVAGRADQFDGLLHYSQRDGHETDSYGSNNGTG LERTAANPEDVKATNVLAKIGWNYNEGSRLGLTYEKYKDDRDTDQKSAYGGPYFNGAPTIPNSVLPGGMYQWRTGNDTIT RERFGLEHSFELDSLLADNVKWSLNHQTAKTDQSTDEFYYPITRKVLRTRDTIYEEKQWVFDAQLDKAFAIGDTDHVLTY GTTIKQQKVTGSRSGDGKCLAVGRGCTAIGATSAADVLKKSSDFPDPTINTYSLFAQDQISWNNWTFLPGLRYDYTQLKP HITQEFLNTVAADGNGTVSDSNKTWHKVSPKFGLTYALTENYTWYGQYAEGFRTPTAKALYGRFENSTTGYNVAPNPDLE PEKSKSYETGLRGNFEQGSFDVAVFYNKYRDFINEDAVTPGYDELTFQSSNIKHATIKGAEVKGRLNLDSFGAPQGLYTQ GSISYAYGRNNDNGEPLNSVNPLTGVFGLGYDQDNYGGLLSWTVVKKKDRVDDSNFKSPDGVSSQFKTPGFGILDLAGYY KVTDDVTVSGGIYNLTDKKYWLWDDVRGYDSVGEASVTQPANLDRLTQPGRNFAINLVWDI
Sequences:
>Translated_861_residues MSSRLTRQTSSPSRVLSLLTAAILMAGTAPLMAATEQPTRNMGDYSFAIPQQPLVSALNAFTAVTGWQVGLPAELGQDVS SPGVRGSLPPEKALERLLVGTNLSFRKLSNNNVVLEKRASSGALNLDQVTISATRQEQSINSVPATVTVQTRQDLDRNNV NTIKDLVRYEPGVSVGGAGQRGGISGYNIRGIDGDRILTQVDGVEVPDGFFNGPYAKTQRNYVDPEIVKRVEILRGPASV LYGSNAIGGAVSYYTLDPDDIIKPGKDVGARLKTGYSSADESWLKSATVAGRADQFDGLLHYSQRDGHETDSYGSNNGTG LERTAANPEDVKATNVLAKIGWNYNEGSRLGLTYEKYKDDRDTDQKSAYGGPYFNGAPTIPNSVLPGGMYQWRTGNDTIT RERFGLEHSFELDSLLADNVKWSLNHQTAKTDQSTDEFYYPITRKVLRTRDTIYEEKQWVFDAQLDKAFAIGDTDHVLTY GTTIKQQKVTGSRSGDGKCLAVGRGCTAIGATSAADVLKKSSDFPDPTINTYSLFAQDQISWNNWTFLPGLRYDYTQLKP HITQEFLNTVAADGNGTVSDSNKTWHKVSPKFGLTYALTENYTWYGQYAEGFRTPTAKALYGRFENSTTGYNVAPNPDLE PEKSKSYETGLRGNFEQGSFDVAVFYNKYRDFINEDAVTPGYDELTFQSSNIKHATIKGAEVKGRLNLDSFGAPQGLYTQ GSISYAYGRNNDNGEPLNSVNPLTGVFGLGYDQDNYGGLLSWTVVKKKDRVDDSNFKSPDGVSSQFKTPGFGILDLAGYY KVTDDVTVSGGIYNLTDKKYWLWDDVRGYDSVGEASVTQPANLDRLTQPGRNFAINLVWDI >Mature_860_residues SSRLTRQTSSPSRVLSLLTAAILMAGTAPLMAATEQPTRNMGDYSFAIPQQPLVSALNAFTAVTGWQVGLPAELGQDVSS PGVRGSLPPEKALERLLVGTNLSFRKLSNNNVVLEKRASSGALNLDQVTISATRQEQSINSVPATVTVQTRQDLDRNNVN TIKDLVRYEPGVSVGGAGQRGGISGYNIRGIDGDRILTQVDGVEVPDGFFNGPYAKTQRNYVDPEIVKRVEILRGPASVL YGSNAIGGAVSYYTLDPDDIIKPGKDVGARLKTGYSSADESWLKSATVAGRADQFDGLLHYSQRDGHETDSYGSNNGTGL ERTAANPEDVKATNVLAKIGWNYNEGSRLGLTYEKYKDDRDTDQKSAYGGPYFNGAPTIPNSVLPGGMYQWRTGNDTITR ERFGLEHSFELDSLLADNVKWSLNHQTAKTDQSTDEFYYPITRKVLRTRDTIYEEKQWVFDAQLDKAFAIGDTDHVLTYG TTIKQQKVTGSRSGDGKCLAVGRGCTAIGATSAADVLKKSSDFPDPTINTYSLFAQDQISWNNWTFLPGLRYDYTQLKPH ITQEFLNTVAADGNGTVSDSNKTWHKVSPKFGLTYALTENYTWYGQYAEGFRTPTAKALYGRFENSTTGYNVAPNPDLEP EKSKSYETGLRGNFEQGSFDVAVFYNKYRDFINEDAVTPGYDELTFQSSNIKHATIKGAEVKGRLNLDSFGAPQGLYTQG SISYAYGRNNDNGEPLNSVNPLTGVFGLGYDQDNYGGLLSWTVVKKKDRVDDSNFKSPDGVSSQFKTPGFGILDLAGYYK VTDDVTVSGGIYNLTDKKYWLWDDVRGYDSVGEASVTQPANLDRLTQPGRNFAINLVWDI
Specific function: Acts as a receptor for hemoglobin or the hemoglobin/haptoglobin complex and is required for heme uptake [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1786798, Length=779, Percent_Identity=22.4646983311938, Blast_Score=88, Evalue=2e-18, Organism=Escherichia coli, GI1790405, Length=144, Percent_Identity=36.1111111111111, Blast_Score=84, Evalue=4e-17, Organism=Escherichia coli, GI1790743, Length=814, Percent_Identity=21.3759213759214, Blast_Score=81, Evalue=2e-16, Organism=Escherichia coli, GI1788478, Length=130, Percent_Identity=34.6153846153846, Blast_Score=80, Evalue=5e-16, Organism=Escherichia coli, GI1786344, Length=551, Percent_Identity=21.2341197822142, Blast_Score=73, Evalue=6e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010949 - InterPro: IPR010917 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 94452; Mature: 94321
Theoretical pI: Translated: 5.22; Mature: 5.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 0.8 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 0.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSRLTRQTSSPSRVLSLLTAAILMAGTAPLMAATEQPTRNMGDYSFAIPQQPLVSALNA CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCEEEECCCHHHHHHHHH FTAVTGWQVGLPAELGQDVSSPGVRGSLPPEKALERLLVGTNLSFRKLSNNNVVLEKRAS HHHHCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEECCC SGALNLDQVTISATRQEQSINSVPATVTVQTRQDLDRNNVNTIKDLVRYEPGVSVGGAGQ CCCCEEEEEEEEEHHHHHHHCCCCCEEEEEEHHCCCCCCHHHHHHHHHCCCCCCCCCCCC RGGISGYNIRGIDGDRILTQVDGVEVPDGFFNGPYAKTQRNYVDPEIVKRVEILRGPASV CCCCCCCEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHH LYGSNAIGGAVSYYTLDPDDIIKPGKDVGARLKTGYSSADESWLKSATVAGRADQFDGLL EECCCCCCCEEEEEEECHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHE HYSQRDGHETDSYGSNNGTGLERTAANPEDVKATNVLAKIGWNYNEGSRLGLTYEKYKDD EECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEECEEHHHHCCC RDTDQKSAYGGPYFNGAPTIPNSVLPGGMYQWRTGNDTITRERFGLEHSFELDSLLADNV CCCCHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEHHHHCCCCCCCHHHHHHCCC KWSLNHQTAKTDQSTDEFYYPITRKVLRTRDTIYEEKQWVFDAQLDKAFAIGDTDHVLTY EEEECCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHEEEECCCCCEEEECCCCCEEEE GTTIKQQKVTGSRSGDGKCLAVGRGCTAIGATSAADVLKKSSDFPDPTINTYSLFAQDQI CCEEEHHCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEEEEECCC SWNNWTFLPGLRYDYTQLKPHITQEFLNTVAADGNGTVSDSNKTWHKVSPKFGLTYALTE CCCCEEECCCCCCCHHHHCHHHHHHHHHHHHCCCCCEECCCCCCEEECCCCCCEEEEEEC NYTWYGQYAEGFRTPTAKALYGRFENSTTGYNVAPNPDLEPEKSKSYETGLRGNFEQGSF CEEEEECHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE DVAVFYNKYRDFINEDAVTPGYDELTFQSSNIKHATIKGAEVKGRLNLDSFGAPQGLYTQ EEEEHHHHHHHHHHHCCCCCCCHHEEEECCCCEEEEEECCEEEEEECCCCCCCCCCCEEC GSISYAYGRNNDNGEPLNSVNPLTGVFGLGYDQDNYGGLLSWTVVKKKDRVDDSNFKSPD CCEEEEECCCCCCCCCCCCCCCCHHHEECCCCCCCCCCEEEEEEEECCCCCCCCCCCCCC GVSSQFKTPGFGILDLAGYYKVTDDVTVSGGIYNLTDKKYWLWDDVRGYDSVGEASVTQP CCCCCCCCCCCCEEEECCEEEECCCEEECCCEEECCCCEEEEECCCCCCCCCCCCCCCCC ANLDRLTQPGRNFAINLVWDI CCCHHHCCCCCCEEEEEEEEC >Mature Secondary Structure SSRLTRQTSSPSRVLSLLTAAILMAGTAPLMAATEQPTRNMGDYSFAIPQQPLVSALNA CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCEEEECCCHHHHHHHHH FTAVTGWQVGLPAELGQDVSSPGVRGSLPPEKALERLLVGTNLSFRKLSNNNVVLEKRAS HHHHCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEECCC SGALNLDQVTISATRQEQSINSVPATVTVQTRQDLDRNNVNTIKDLVRYEPGVSVGGAGQ CCCCEEEEEEEEEHHHHHHHCCCCCEEEEEEHHCCCCCCHHHHHHHHHCCCCCCCCCCCC RGGISGYNIRGIDGDRILTQVDGVEVPDGFFNGPYAKTQRNYVDPEIVKRVEILRGPASV CCCCCCCEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHH LYGSNAIGGAVSYYTLDPDDIIKPGKDVGARLKTGYSSADESWLKSATVAGRADQFDGLL EECCCCCCCEEEEEEECHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHE HYSQRDGHETDSYGSNNGTGLERTAANPEDVKATNVLAKIGWNYNEGSRLGLTYEKYKDD EECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEECEEHHHHCCC RDTDQKSAYGGPYFNGAPTIPNSVLPGGMYQWRTGNDTITRERFGLEHSFELDSLLADNV CCCCHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEHHHHCCCCCCCHHHHHHCCC KWSLNHQTAKTDQSTDEFYYPITRKVLRTRDTIYEEKQWVFDAQLDKAFAIGDTDHVLTY EEEECCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHEEEECCCCCEEEECCCCCEEEE GTTIKQQKVTGSRSGDGKCLAVGRGCTAIGATSAADVLKKSSDFPDPTINTYSLFAQDQI CCEEEHHCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEEEEECCC SWNNWTFLPGLRYDYTQLKPHITQEFLNTVAADGNGTVSDSNKTWHKVSPKFGLTYALTE CCCCEEECCCCCCCHHHHCHHHHHHHHHHHHCCCCCEECCCCCCEEECCCCCCEEEEEEC NYTWYGQYAEGFRTPTAKALYGRFENSTTGYNVAPNPDLEPEKSKSYETGLRGNFEQGSF CEEEEECHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE DVAVFYNKYRDFINEDAVTPGYDELTFQSSNIKHATIKGAEVKGRLNLDSFGAPQGLYTQ EEEEHHHHHHHHHHHCCCCCCCHHEEEECCCCEEEEEECCEEEEEECCCCCCCCCCCEEC GSISYAYGRNNDNGEPLNSVNPLTGVFGLGYDQDNYGGLLSWTVVKKKDRVDDSNFKSPD CCEEEEECCCCCCCCCCCCCCCCHHHEECCCCCCCCCCEEEEEEEECCCCCCCCCCCCCC GVSSQFKTPGFGILDLAGYYKVTDDVTVSGGIYNLTDKKYWLWDDVRGYDSVGEASVTQP CCCCCCCCCCCCEEEECCEEEECCCEEECCCEEECCCCEEEEECCCCCCCCCCCCCCCCC ANLDRLTQPGRNFAINLVWDI CCCHHHCCCCCCEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10761919 [H]