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The map label for this gene is fecI [C]

Identifier: 77460598

GI number: 77460598

Start: 4932478

End: 4932996

Strand: Direct

Name: fecI [C]

Synonym: Pfl01_4377

Alternate gene names: 77460598

Gene position: 4932478-4932996 (Clockwise)

Preceding gene: 77460597

Following gene: 77460599

Centisome position: 76.61

GC content: 59.54

Gene sequence:

>519_bases
GTGAGTCAATCACACTTCAACCACGTCTTCCTTGCCCAACGCACATCGCTGCTGCGGACTCTGGAACGAATGGTCAACAA
CCACAGCACCGCCGAAGACCTGTTGCAGGAAACCTACCTGCGCGTCACCCGGGCGCTGAGCGAACGGGCCATCGATCACC
TTGAACCCTTTGTCTTCCAGACCGCGCGCAACCTGGCGCTGGACCATTTGCGTGCGCGCAAGATTCACTCACGCACCATG
GTCGACGACGTGCCGCAGGACGTGGTGCACAGCGTTGCCGCCCCCGCCAGCAGTGCCGAAGACGCCGCCCACGCCGAACA
ATTGCTGGAGCGCCTGAACGTGAGCCTCGGTGAACTCAGCCCGCGCCAACAGCAGATTTTTATCCTCAGCCGCCTGCACG
GGCACAGCTATCAGGAAATCGCCGAAGAACTGAGCGTCTCTCTCAGCACGGTGCAGAAAGAACTCAAACTGATCATGACC
ATCTGCATCGGTGTCGCCGAACGTTTGAATGGCAACTGA

Upstream 100 bases:

>100_bases
CAGCTCCCACATGGTCAATTATTCCAATTTGAAATCAAGGCTTGACCACTCGAGCGGATGATAAGCATTATCATTCACCC
GAAATGGATCAGGTCTTCCC

Downstream 100 bases:

>100_bases
TGCGGTAGAGCCTTTCTGTAAACCTCAGGATCGACTGCACTGATCATCGGGCTTTGTTACCCTTGCCCGACTTTTACGCT
TCACTAAAAAAACAGCCGTG

Product: sigma-24 (FecI)

Products: NA

Alternate protein names: Sigma-; ECF Subfamily RNA Polymerase Sigma Factor; RNA Polymerase Sigma-70 Family Protein; RNA Polymerase Sigma Factor FecI; ECF Family Sigma Factor; RNA Polymerase Sigma Factor; DNA-Directed RNA Polymeracialized Sigma Subunit; ECF Subfamily RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma-70 Factor FecI; Fec I Like Protein; ECF Sigma Factor; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; RNA Polymerase Sigma Factor Sigma-70 Family; Sigma-70 Family RNA Polymerase Sigma Factor; RNA Polymerase ECF-Subfamily Sigma-70 Factor; ECF Sigma Factor FecI Family; RNA Polymerase Sigma Factor FecI Family

Number of amino acids: Translated: 172; Mature: 171

Protein sequence:

>172_residues
MSQSHFNHVFLAQRTSLLRTLERMVNNHSTAEDLLQETYLRVTRALSERAIDHLEPFVFQTARNLALDHLRARKIHSRTM
VDDVPQDVVHSVAAPASSAEDAAHAEQLLERLNVSLGELSPRQQQIFILSRLHGHSYQEIAEELSVSLSTVQKELKLIMT
ICIGVAERLNGN

Sequences:

>Translated_172_residues
MSQSHFNHVFLAQRTSLLRTLERMVNNHSTAEDLLQETYLRVTRALSERAIDHLEPFVFQTARNLALDHLRARKIHSRTM
VDDVPQDVVHSVAAPASSAEDAAHAEQLLERLNVSLGELSPRQQQIFILSRLHGHSYQEIAEELSVSLSTVQKELKLIMT
ICIGVAERLNGN
>Mature_171_residues
SQSHFNHVFLAQRTSLLRTLERMVNNHSTAEDLLQETYLRVTRALSERAIDHLEPFVFQTARNLALDHLRARKIHSRTMV
DDVPQDVVHSVAAPASSAEDAAHAEQLLERLNVSLGELSPRQQQIFILSRLHGHSYQEIAEELSVSLSTVQKELKLIMTI
CIGVAERLNGN

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Regulates The Fec Genes For Iron Dicitrate Transport (Probable). [C]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19439; Mature: 19308

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQSHFNHVFLAQRTSLLRTLERMVNNHSTAEDLLQETYLRVTRALSERAIDHLEPFVFQ
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TARNLALDHLRARKIHSRTMVDDVPQDVVHSVAAPASSAEDAAHAEQLLERLNVSLGELS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHCCC
PRQQQIFILSRLHGHSYQEIAEELSVSLSTVQKELKLIMTICIGVAERLNGN
CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SQSHFNHVFLAQRTSLLRTLERMVNNHSTAEDLLQETYLRVTRALSERAIDHLEPFVFQ
CCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TARNLALDHLRARKIHSRTMVDDVPQDVVHSVAAPASSAEDAAHAEQLLERLNVSLGELS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHCCC
PRQQQIFILSRLHGHSYQEIAEELSVSLSTVQKELKLIMTICIGVAERLNGN
CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA