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The map label for this gene is ydhB [H]

Identifier: 77460559

GI number: 77460559

Start: 4892127

End: 4892999

Strand: Reverse

Name: ydhB [H]

Synonym: Pfl01_4338

Alternate gene names: 77460559

Gene position: 4892999-4892127 (Counterclockwise)

Preceding gene: 77460564

Following gene: 77460557

Centisome position: 76.0

GC content: 62.77

Gene sequence:

>873_bases
GTGAATTTCAACAGCGAAAGCATCGAGCTGTTTCTCGCCGTGATCGAGCGCGGCTCGTTTTCCGCCGCTGCAAGGGCGTT
GGGCAAAGTCCCGTCGGCGGTGAGCATGGCGATCGGCAATCTCGAGGCCGAACTCGGTTATGCGTTGTTCGACCGCAGTC
ACCGCGAACCGCAACCCACGGCGATGGCGCTGTCGCTGGTGCCACACGCGCGGCTGATCGCCGATCAGCTCAAGCAATTG
CAAGTGCATGCGGTGCAGTTATCGCTGGGGCTGGAGAGCAAATTGTCGATTGGCGTGGCGGCGGACATTGACCGTCGACG
GTTGTTGGCGGCGATCAAGGACCTCAGCGAGCGCCATCCGCTGCTCGACATCGAAGTGCTGACCGCGCCGCAGGACGATG
TACTGGCGATGCTTCACAGCGGCCGGGTCAGCGTGTGTCTGGCGTTCGCCGGGTTGAGCGTGAACGTGCTGGAGCGTTTT
CAGTTTGTCGGCAGTGAACGGATGATCGCCACGCTGGCGGCGGACAGCCCGTTGTTGCAGGGGCAGGATCTGTTTCTCGA
GGATCTGGTGCATGTGCGGCAGATCGTGGTTGGCAGTCGCGATTTGCCGATCAGCGAAACCCGGCCACTGGTGGCCGAGT
CCCACTGGCGCACCGACAACCTGGAGACGGCGCTGGAAATGGTCGAGACGGGGTTGGGCTGGGGCAATTTTCCGCTGTCG
GTGGTGCAGCCGTGGCTCGATAGCGGACGACTGAAACGGCTGAATTTCCGCAACATCGAAAACGGCCTGGTGCTGCCGGT
GCACGCGGTGTGGCTCAAGAGCCAGCCGCTGCAGAAGGGCGCGCTGGCTCTGGTGGAGTTGCTGGGCGGTTGA

Upstream 100 bases:

>100_bases
GACTTGTGGCCAACGGGGCTGGCGAAGGCGACGAAAGATAGCTTCAATGGCGGTGACAGAAAAAGTCAGAAGCTTTCAGT
TTTATTGATAGGTAAATGAA

Downstream 100 bases:

>100_bases
GTCAGGTGCTCTCGCGAATCTTCAGCTCGAAGCCCATGTCTTCGACCGGCCGCGCCACACTGTTGCCGGCCATCAGTGTC
AGCATCTGCTCCGCCGCACG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 290

Protein sequence:

>290_residues
MNFNSESIELFLAVIERGSFSAAARALGKVPSAVSMAIGNLEAELGYALFDRSHREPQPTAMALSLVPHARLIADQLKQL
QVHAVQLSLGLESKLSIGVAADIDRRRLLAAIKDLSERHPLLDIEVLTAPQDDVLAMLHSGRVSVCLAFAGLSVNVLERF
QFVGSERMIATLAADSPLLQGQDLFLEDLVHVRQIVVGSRDLPISETRPLVAESHWRTDNLETALEMVETGLGWGNFPLS
VVQPWLDSGRLKRLNFRNIENGLVLPVHAVWLKSQPLQKGALALVELLGG

Sequences:

>Translated_290_residues
MNFNSESIELFLAVIERGSFSAAARALGKVPSAVSMAIGNLEAELGYALFDRSHREPQPTAMALSLVPHARLIADQLKQL
QVHAVQLSLGLESKLSIGVAADIDRRRLLAAIKDLSERHPLLDIEVLTAPQDDVLAMLHSGRVSVCLAFAGLSVNVLERF
QFVGSERMIATLAADSPLLQGQDLFLEDLVHVRQIVVGSRDLPISETRPLVAESHWRTDNLETALEMVETGLGWGNFPLS
VVQPWLDSGRLKRLNFRNIENGLVLPVHAVWLKSQPLQKGALALVELLGG
>Mature_290_residues
MNFNSESIELFLAVIERGSFSAAARALGKVPSAVSMAIGNLEAELGYALFDRSHREPQPTAMALSLVPHARLIADQLKQL
QVHAVQLSLGLESKLSIGVAADIDRRRLLAAIKDLSERHPLLDIEVLTAPQDDVLAMLHSGRVSVCLAFAGLSVNVLERF
QFVGSERMIATLAADSPLLQGQDLFLEDLVHVRQIVVGSRDLPISETRPLVAESHWRTDNLETALEMVETGLGWGNFPLS
VVQPWLDSGRLKRLNFRNIENGLVLPVHAVWLKSQPLQKGALALVELLGG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787949, Length=263, Percent_Identity=28.5171102661597, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI87082024, Length=263, Percent_Identity=27.3764258555133, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1789492, Length=255, Percent_Identity=26.2745098039216, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31677; Mature: 31677

Theoretical pI: Translated: 5.86; Mature: 5.86

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFNSESIELFLAVIERGSFSAAARALGKVPSAVSMAIGNLEAELGYALFDRSHREPQPT
CCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
AMALSLVPHARLIADQLKQLQVHAVQLSLGLESKLSIGVAADIDRRRLLAAIKDLSERHP
HHHHHHCCHHHHHHHHHHHHHHHHEEEECCCCCCCCCCEECCCHHHHHHHHHHHHHHCCC
LLDIEVLTAPQDDVLAMLHSGRVSVCLAFAGLSVNVLERFQFVGSERMIATLAADSPLLQ
EEEEEEEECCCHHHHHHHHCCCCEEEEHHHCCCHHHHHHHHHHCCCCEEEEEECCCCCCC
GQDLFLEDLVHVRQIVVGSRDLPISETRPLVAESHWRTDNLETALEMVETGLGWGNFPLS
CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHCCCCCCCCHH
VVQPWLDSGRLKRLNFRNIENGLVLPVHAVWLKSQPLQKGALALVELLGG
HHHHHHCCCCEEECCCCCCCCCEEEEEHHEECCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MNFNSESIELFLAVIERGSFSAAARALGKVPSAVSMAIGNLEAELGYALFDRSHREPQPT
CCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
AMALSLVPHARLIADQLKQLQVHAVQLSLGLESKLSIGVAADIDRRRLLAAIKDLSERHP
HHHHHHCCHHHHHHHHHHHHHHHHEEEECCCCCCCCCCEECCCHHHHHHHHHHHHHHCCC
LLDIEVLTAPQDDVLAMLHSGRVSVCLAFAGLSVNVLERFQFVGSERMIATLAADSPLLQ
EEEEEEEECCCHHHHHHHHCCCCEEEEHHHCCCHHHHHHHHHHCCCCEEEEEECCCCCCC
GQDLFLEDLVHVRQIVVGSRDLPISETRPLVAESHWRTDNLETALEMVETGLGWGNFPLS
CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHCCCCCCCCHH
VVQPWLDSGRLKRLNFRNIENGLVLPVHAVWLKSQPLQKGALALVELLGG
HHHHHHCCCCEEECCCCCCCCCEEEEEHHEECCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]