Click here to switch to the map view.

The map label for this gene is 77460547

Identifier: 77460547

GI number: 77460547

Start: 4881976

End: 4883220

Strand: Reverse

Name: 77460547

Synonym: Pfl01_4326

Alternate gene names: NA

Gene position: 4883220-4881976 (Counterclockwise)

Preceding gene: 77460548

Following gene: 77460545

Centisome position: 75.85

GC content: 64.42

Gene sequence:

>1245_bases
ATGTCTGAGGTCCGGGCGCGGGTCGAGCAGGTCTATCGTGAAGACTCGCGGCGGATCCTCGCGACCCTGATCCGCCTGCT
CGGCGATTTCGACCTCGCCGAAGAAGCCTTGCACGAGGCGTTCTTCGTCGCGGTCGAGCGCTGGCAGCGCGACGGCGTTC
CGGACAATCCGCGGACCTGGCTGGTGTCCACCGGGCGCTTCAAGGCGATCGACGTGTTGCGCCGTCGCGCACGGTTCAAG
GCCTCGCAGCCGTTATTGCTGGCGCAACTGGAAGAACTGGAACAGTCCGAATGGGACGCCGAAGACGTGGAAGACGATCG
CCTGCGCCTGATCTTCACCTGCTGCCACCCGGCGCTGGCGGCGGATGCGCAAGTGCCGCTGACACTGCGTGAAGTCTGCG
ACCTCACCACCGAGGAAATCGCCCGGGCATTCCTCTCGGCCCCGGCGGCGATTGCCCAGCGCATCGTGCGCGCCAAGGCC
AAGATTCGCGATGCGAAAATCCCTTATCAAGTTCCAGCCCTCAGCGAACTGCCCGAGCGCCTCGACAGCGTGTTGCGGGT
GATTTATCTGGTGTTCAACGAAGGCTACTCGGCATCCGGCGGCGCTCAGGTGACCCGCGAGGATTTGACTCGTGAGGCGA
TTCGTCTCGGGCGGTTGTTGCTGGAGTTGTTGCCGGATCCAGAGGTCATGGGGTTGCTGGCGTTGATGCTGCTGCATGAA
TCGCGGCGCTCGGCGCGGTCGACGCCGGATGGAGAACTGATTCTGCTGGATGATCAGGATCGCGGATTGTGGAATGCCGA
GTTGATTGCCGAAGGCTGCGATCTGGTGGAAAAAGCGCTGACCACGGGACGTTTCGGGCCGTACTGCCTGCAAGCGGCGA
TAGCGGCGGTGCACGCCGAAGCGCCGACGGCGGGGGAGACGGACTGGGCGCAGATCGTCGGGCTGTATGACGTGTTGCTG
CGGGCGGTGCCGTCGCCGGTGATCGAGTTGAACCGGGCGGTGGCGGTGTCCAAGCGTGATGGGGCGTTGGCCGGGTTGAC
CTTGATCGAGGGGATTCTGGATCGGGGGGATTTGCAGGATTACCACCTGGCGCATTCGGCGCGGGCGGAGTTTTGTCGGC
AGTTGGGACGGGTTGAGGAGGCGCGGGTGGCCTATTCACGGGCACTGGAGTTGACGCGGCAGGAGCCGGAGCGGCGGTTT
ATCGAGGGGCGGCTTTCGGCTTTGGATCGCTTGCCCTCACCCTAG

Upstream 100 bases:

>100_bases
CTGATCGACGCGCGGGATCTCAACGAAGCGATTCAGGTCGCCGGCAACATTCCGGCGGCCCGGGTCGGCAGCGTCGAAGT
GCGTCCCGTGCGCCAGTTGA

Downstream 100 bases:

>100_bases
CCCTCTCCCGGAGGGAGAGGGGACCGATCCGGGGATATTGGGGATATACGCCGACCTGAGCGGTTCGCTGTGAATCCATA
ATCGACCAGATCTTTCAGGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 414; Mature: 413

Protein sequence:

>414_residues
MSEVRARVEQVYREDSRRILATLIRLLGDFDLAEEALHEAFFVAVERWQRDGVPDNPRTWLVSTGRFKAIDVLRRRARFK
ASQPLLLAQLEELEQSEWDAEDVEDDRLRLIFTCCHPALAADAQVPLTLREVCDLTTEEIARAFLSAPAAIAQRIVRAKA
KIRDAKIPYQVPALSELPERLDSVLRVIYLVFNEGYSASGGAQVTREDLTREAIRLGRLLLELLPDPEVMGLLALMLLHE
SRRSARSTPDGELILLDDQDRGLWNAELIAEGCDLVEKALTTGRFGPYCLQAAIAAVHAEAPTAGETDWAQIVGLYDVLL
RAVPSPVIELNRAVAVSKRDGALAGLTLIEGILDRGDLQDYHLAHSARAEFCRQLGRVEEARVAYSRALELTRQEPERRF
IEGRLSALDRLPSP

Sequences:

>Translated_414_residues
MSEVRARVEQVYREDSRRILATLIRLLGDFDLAEEALHEAFFVAVERWQRDGVPDNPRTWLVSTGRFKAIDVLRRRARFK
ASQPLLLAQLEELEQSEWDAEDVEDDRLRLIFTCCHPALAADAQVPLTLREVCDLTTEEIARAFLSAPAAIAQRIVRAKA
KIRDAKIPYQVPALSELPERLDSVLRVIYLVFNEGYSASGGAQVTREDLTREAIRLGRLLLELLPDPEVMGLLALMLLHE
SRRSARSTPDGELILLDDQDRGLWNAELIAEGCDLVEKALTTGRFGPYCLQAAIAAVHAEAPTAGETDWAQIVGLYDVLL
RAVPSPVIELNRAVAVSKRDGALAGLTLIEGILDRGDLQDYHLAHSARAEFCRQLGRVEEARVAYSRALELTRQEPERRF
IEGRLSALDRLPSP
>Mature_413_residues
SEVRARVEQVYREDSRRILATLIRLLGDFDLAEEALHEAFFVAVERWQRDGVPDNPRTWLVSTGRFKAIDVLRRRARFKA
SQPLLLAQLEELEQSEWDAEDVEDDRLRLIFTCCHPALAADAQVPLTLREVCDLTTEEIARAFLSAPAAIAQRIVRAKAK
IRDAKIPYQVPALSELPERLDSVLRVIYLVFNEGYSASGGAQVTREDLTREAIRLGRLLLELLPDPEVMGLLALMLLHES
RRSARSTPDGELILLDDQDRGLWNAELIAEGCDLVEKALTTGRFGPYCLQAAIAAVHAEAPTAGETDWAQIVGLYDVLLR
AVPSPVIELNRAVAVSKRDGALAGLTLIEGILDRGDLQDYHLAHSARAEFCRQLGRVEEARVAYSRALELTRQEPERRFI
EGRLSALDRLPSP

Specific function: Unknown

COG id: COG4941

COG function: function code K; Predicted RNA polymerase sigma factor containing a TPR repeat domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008940
- InterPro:   IPR014284
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 46339; Mature: 46207

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEVRARVEQVYREDSRRILATLIRLLGDFDLAEEALHEAFFVAVERWQRDGVPDNPRTW
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEE
LVSTGRFKAIDVLRRRARFKASQPLLLAQLEELEQSEWDAEDVEDDRLRLIFTCCHPALA
EEECCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCHHHH
ADAQVPLTLREVCDLTTEEIARAFLSAPAAIAQRIVRAKAKIRDAKIPYQVPALSELPER
CCCCCCCHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
LDSVLRVIYLVFNEGYSASGGAQVTREDLTREAIRLGRLLLELLPDPEVMGLLALMLLHE
HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
SRRSARSTPDGELILLDDQDRGLWNAELIAEGCDLVEKALTTGRFGPYCLQAAIAAVHAE
HHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC
APTAGETDWAQIVGLYDVLLRAVPSPVIELNRAVAVSKRDGALAGLTLIEGILDRGDLQD
CCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHEEECCCCHHHHHHHHHHHHCCCCCHH
YHLAHSARAEFCRQLGRVEEARVAYSRALELTRQEPERRFIEGRLSALDRLPSP
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SEVRARVEQVYREDSRRILATLIRLLGDFDLAEEALHEAFFVAVERWQRDGVPDNPRTW
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEE
LVSTGRFKAIDVLRRRARFKASQPLLLAQLEELEQSEWDAEDVEDDRLRLIFTCCHPALA
EEECCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCHHHH
ADAQVPLTLREVCDLTTEEIARAFLSAPAAIAQRIVRAKAKIRDAKIPYQVPALSELPER
CCCCCCCHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
LDSVLRVIYLVFNEGYSASGGAQVTREDLTREAIRLGRLLLELLPDPEVMGLLALMLLHE
HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
SRRSARSTPDGELILLDDQDRGLWNAELIAEGCDLVEKALTTGRFGPYCLQAAIAAVHAE
HHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC
APTAGETDWAQIVGLYDVLLRAVPSPVIELNRAVAVSKRDGALAGLTLIEGILDRGDLQD
CCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHEEECCCCHHHHHHHHHHHHCCCCCHH
YHLAHSARAEFCRQLGRVEEARVAYSRALELTRQEPERRFIEGRLSALDRLPSP
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11481430; 7751302 [H]