| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is ydfG [C]
Identifier: 77460546
GI number: 77460546
Start: 4881055
End: 4881780
Strand: Direct
Name: ydfG [C]
Synonym: Pfl01_4325
Alternate gene names: 77460546
Gene position: 4881055-4881780 (Clockwise)
Preceding gene: 77460544
Following gene: 77460550
Centisome position: 75.81
GC content: 64.33
Gene sequence:
>726_bases ATGAGCAAGCCATTGATCATCATCACCGGCGCCAGCTCGGGCATCGGCGAAGCCACCGCCCGCCGCTTGAGCGCGGCCGG CCATCCGCTGCTGTTGCTGGCCCGGCGCATCGAACGCCTGGAAGCACTGGCCCTGCCGAACACTCTCAGCCGCCGCGTCG ACATCACCGACCGCGCCGCATTGCTGGCCGCTGTTGCCGAGGCGGAAGCGCAGTTCGGTCCGGCCGATGCGCTGATCAAC AACGCCGGGGTGATGCTGCTGGGCGAGATGAGCAAACAGGATCCGGCGCAGTGGGACCAGATGCTCGACGTCAACGTGAA AGGTCTGCTCAACGGCGTGCACGCGGTGGTCGCCGGGATGATCGAGCGCAAGCACGGCACGATCATCAACGTCAGCTCGG TGGCCGGGCGCAAGACCTTCCCCAACCATGTGGCCTATGTCGGGACCAAGTTTGCGGTGCATGGGCTGTCGGAGAATCTG CGTGAAGAGCTGTCGCCGCATAACGTGCGGGTGACCACGATTGCGCCGGGTGCGGTGGAAACCGAGTTGCTGAGCCACAC CACGGATGAGGCGATCAAGACCGGTTATCAGGCGTGGAAGCAGGACATGGGTGGCACGGTGTTGAGCGCCGAGGATGTGG CGACGGCGATTGCCTATGCGTATGGGCAGCCGCAGGGGGTTTGTATTCGCGAGATTGTGATGGCTGCGACTCGGCAGCAG GCCTAA
Upstream 100 bases:
>100_bases ATAGCAGACAGAGGAATAAGGCATTTTTCAGCCTCCAGCGGGCTAAATATACTGCGCCCCGAATCTGGTTATTTGTTTTT CTTATCTCAGGAGTTCAACC
Downstream 100 bases:
>100_bases AAGCTAAAGGCGAAAGGCAAAATCAAAAGCGCCCTCACCCTAACCCTCTCCCGGAGGGAGAGGGAACTGACCGAGGTGTC TTACGTCATACATCGACCTG
Product: Short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 241; Mature: 240
Protein sequence:
>241_residues MSKPLIIITGASSGIGEATARRLSAAGHPLLLLARRIERLEALALPNTLSRRVDITDRAALLAAVAEAEAQFGPADALIN NAGVMLLGEMSKQDPAQWDQMLDVNVKGLLNGVHAVVAGMIERKHGTIINVSSVAGRKTFPNHVAYVGTKFAVHGLSENL REELSPHNVRVTTIAPGAVETELLSHTTDEAIKTGYQAWKQDMGGTVLSAEDVATAIAYAYGQPQGVCIREIVMAATRQQ A
Sequences:
>Translated_241_residues MSKPLIIITGASSGIGEATARRLSAAGHPLLLLARRIERLEALALPNTLSRRVDITDRAALLAAVAEAEAQFGPADALIN NAGVMLLGEMSKQDPAQWDQMLDVNVKGLLNGVHAVVAGMIERKHGTIINVSSVAGRKTFPNHVAYVGTKFAVHGLSENL REELSPHNVRVTTIAPGAVETELLSHTTDEAIKTGYQAWKQDMGGTVLSAEDVATAIAYAYGQPQGVCIREIVMAATRQQ A >Mature_240_residues SKPLIIITGASSGIGEATARRLSAAGHPLLLLARRIERLEALALPNTLSRRVDITDRAALLAAVAEAEAQFGPADALINN AGVMLLGEMSKQDPAQWDQMLDVNVKGLLNGVHAVVAGMIERKHGTIINVSSVAGRKTFPNHVAYVGTKFAVHGLSENLR EELSPHNVRVTTIAPGAVETELLSHTTDEAIKTGYQAWKQDMGGTVLSAEDVATAIAYAYGQPQGVCIREIVMAATRQQA
Specific function: Unknown
COG id: COG4221
COG function: function code R; Short-chain alcohol dehydrogenase of unknown specificity
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI109715829, Length=249, Percent_Identity=32.9317269076305, Blast_Score=108, Evalue=3e-24, Organism=Homo sapiens, GI20149619, Length=191, Percent_Identity=32.4607329842932, Blast_Score=101, Evalue=6e-22, Organism=Homo sapiens, GI7706318, Length=198, Percent_Identity=30.8080808080808, Blast_Score=95, Evalue=7e-20, Organism=Homo sapiens, GI4503817, Length=217, Percent_Identity=30.8755760368664, Blast_Score=94, Evalue=1e-19, Organism=Homo sapiens, GI7705925, Length=181, Percent_Identity=32.0441988950276, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI32483357, Length=193, Percent_Identity=31.6062176165803, Blast_Score=85, Evalue=7e-17, Organism=Homo sapiens, GI157739938, Length=188, Percent_Identity=28.7234042553192, Blast_Score=81, Evalue=8e-16, Organism=Homo sapiens, GI142976729, Length=192, Percent_Identity=29.1666666666667, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI4758504, Length=199, Percent_Identity=30.6532663316583, Blast_Score=78, Evalue=9e-15, Organism=Homo sapiens, GI40254992, Length=189, Percent_Identity=27.5132275132275, Blast_Score=75, Evalue=4e-14, Organism=Homo sapiens, GI7657478, Length=188, Percent_Identity=29.7872340425532, Blast_Score=75, Evalue=5e-14, Organism=Homo sapiens, GI223718074, Length=194, Percent_Identity=31.4432989690722, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI5031737, Length=187, Percent_Identity=31.0160427807487, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI150247226, Length=206, Percent_Identity=31.0679611650485, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI33667109, Length=200, Percent_Identity=29.5, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI19923817, Length=208, Percent_Identity=26.4423076923077, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI19743808, Length=210, Percent_Identity=27.6190476190476, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI44680136, Length=200, Percent_Identity=25.5, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI44680133, Length=200, Percent_Identity=25.5, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI17738292, Length=200, Percent_Identity=25.5, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI126723191, Length=184, Percent_Identity=30.4347826086957, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI15277342, Length=240, Percent_Identity=25.8333333333333, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI22507405, Length=210, Percent_Identity=29.0476190476191, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI226371731, Length=193, Percent_Identity=26.9430051813472, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI4557649, Length=203, Percent_Identity=27.0935960591133, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI210032110, Length=186, Percent_Identity=25.2688172043011, Blast_Score=68, Evalue=6e-12, Organism=Homo sapiens, GI126723750, Length=194, Percent_Identity=26.8041237113402, Blast_Score=68, Evalue=9e-12, Organism=Homo sapiens, GI31542939, Length=229, Percent_Identity=26.2008733624454, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI166795268, Length=204, Percent_Identity=27.4509803921569, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI66933014, Length=190, Percent_Identity=26.8421052631579, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI40548397, Length=197, Percent_Identity=30.4568527918782, Blast_Score=65, Evalue=4e-11, Organism=Homo sapiens, GI214010158, Length=197, Percent_Identity=30.4568527918782, Blast_Score=65, Evalue=4e-11, Organism=Homo sapiens, GI214010156, Length=197, Percent_Identity=30.4568527918782, Blast_Score=65, Evalue=4e-11, Organism=Homo sapiens, GI22758144, Length=197, Percent_Identity=30.4568527918782, Blast_Score=65, Evalue=4e-11, Organism=Escherichia coli, GI1787820, Length=243, Percent_Identity=34.5679012345679, Blast_Score=119, Evalue=1e-28, Organism=Escherichia coli, GI87082100, Length=186, Percent_Identity=38.1720430107527, Blast_Score=98, Evalue=4e-22, Organism=Escherichia coli, GI1787335, Length=219, Percent_Identity=27.3972602739726, Blast_Score=92, Evalue=2e-20, Organism=Escherichia coli, GI87082160, Length=182, Percent_Identity=31.3186813186813, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1790717, Length=210, Percent_Identity=30.952380952381, Blast_Score=83, Evalue=1e-17, Organism=Escherichia coli, GI1786701, Length=186, Percent_Identity=29.5698924731183, Blast_Score=74, Evalue=7e-15, Organism=Escherichia coli, GI1787526, Length=191, Percent_Identity=30.3664921465969, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1789208, Length=182, Percent_Identity=27.4725274725275, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI2367175, Length=189, Percent_Identity=29.6296296296296, Blast_Score=68, Evalue=4e-13, Organism=Escherichia coli, GI1786812, Length=186, Percent_Identity=27.4193548387097, Blast_Score=62, Evalue=2e-11, Organism=Caenorhabditis elegans, GI71994604, Length=205, Percent_Identity=35.1219512195122, Blast_Score=100, Evalue=5e-22, Organism=Caenorhabditis elegans, GI71994600, Length=190, Percent_Identity=32.1052631578947, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI71997099, Length=217, Percent_Identity=34.1013824884793, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17560676, Length=187, Percent_Identity=31.5508021390374, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI71982365, Length=190, Percent_Identity=30, Blast_Score=77, Evalue=9e-15, Organism=Caenorhabditis elegans, GI17559104, Length=195, Percent_Identity=30.7692307692308, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17562910, Length=247, Percent_Identity=28.3400809716599, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI115534694, Length=186, Percent_Identity=30.1075268817204, Blast_Score=74, Evalue=7e-14, Organism=Caenorhabditis elegans, GI17562990, Length=192, Percent_Identity=32.2916666666667, Blast_Score=74, Evalue=9e-14, Organism=Caenorhabditis elegans, GI17563726, Length=191, Percent_Identity=29.3193717277487, Blast_Score=71, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17538182, Length=207, Percent_Identity=29.4685990338164, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17562906, Length=195, Percent_Identity=27.6923076923077, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17562904, Length=195, Percent_Identity=28.7179487179487, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17555706, Length=195, Percent_Identity=28.7179487179487, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17555612, Length=207, Percent_Identity=35.2657004830918, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI25147288, Length=184, Percent_Identity=27.1739130434783, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17560332, Length=240, Percent_Identity=27.9166666666667, Blast_Score=67, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17567345, Length=188, Percent_Identity=26.063829787234, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17560150, Length=197, Percent_Identity=29.9492385786802, Blast_Score=66, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17544670, Length=257, Percent_Identity=29.1828793774319, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17560220, Length=195, Percent_Identity=27.6923076923077, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17562908, Length=195, Percent_Identity=27.1794871794872, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17570069, Length=220, Percent_Identity=25, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI193204405, Length=195, Percent_Identity=28.2051282051282, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17558628, Length=209, Percent_Identity=31.5789473684211, Blast_Score=64, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17508895, Length=193, Percent_Identity=24.8704663212435, Blast_Score=64, Evalue=5e-11, Organism=Caenorhabditis elegans, GI72000259, Length=196, Percent_Identity=29.0816326530612, Blast_Score=64, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17561402, Length=187, Percent_Identity=29.9465240641711, Blast_Score=64, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=256, Percent_Identity=34.375, Blast_Score=122, Evalue=7e-29, Organism=Saccharomyces cerevisiae, GI6322067, Length=187, Percent_Identity=30.4812834224599, Blast_Score=76, Evalue=6e-15, Organism=Saccharomyces cerevisiae, GI6322227, Length=191, Percent_Identity=28.7958115183246, Blast_Score=68, Evalue=1e-12, Organism=Drosophila melanogaster, GI24641232, Length=245, Percent_Identity=30.6122448979592, Blast_Score=107, Evalue=7e-24, Organism=Drosophila melanogaster, GI116007236, Length=245, Percent_Identity=33.0612244897959, Blast_Score=105, Evalue=4e-23, Organism=Drosophila melanogaster, GI21357041, Length=187, Percent_Identity=35.8288770053476, Blast_Score=104, Evalue=5e-23, Organism=Drosophila melanogaster, GI24663911, Length=246, Percent_Identity=33.3333333333333, Blast_Score=103, Evalue=8e-23, Organism=Drosophila melanogaster, GI28571387, Length=246, Percent_Identity=33.739837398374, Blast_Score=101, Evalue=4e-22, Organism=Drosophila melanogaster, GI24641388, Length=247, Percent_Identity=33.6032388663968, Blast_Score=100, Evalue=8e-22, Organism=Drosophila melanogaster, GI23397609, Length=187, Percent_Identity=35.2941176470588, Blast_Score=99, Evalue=2e-21, Organism=Drosophila melanogaster, GI24643142, Length=194, Percent_Identity=31.9587628865979, Blast_Score=98, Evalue=6e-21, Organism=Drosophila melanogaster, GI281364494, Length=247, Percent_Identity=30.3643724696356, Blast_Score=97, Evalue=1e-20, Organism=Drosophila melanogaster, GI28571526, Length=186, Percent_Identity=33.3333333333333, Blast_Score=97, Evalue=1e-20, Organism=Drosophila melanogaster, GI24648944, Length=245, Percent_Identity=29.3877551020408, Blast_Score=96, Evalue=2e-20, Organism=Drosophila melanogaster, GI116007234, Length=245, Percent_Identity=32.6530612244898, Blast_Score=94, Evalue=8e-20, Organism=Drosophila melanogaster, GI24648693, Length=247, Percent_Identity=30.3643724696356, Blast_Score=94, Evalue=1e-19, Organism=Drosophila melanogaster, GI21355889, Length=247, Percent_Identity=30.3643724696356, Blast_Score=94, Evalue=1e-19, Organism=Drosophila melanogaster, GI24644339, Length=186, Percent_Identity=31.7204301075269, Blast_Score=92, Evalue=4e-19, Organism=Drosophila melanogaster, GI21358495, Length=190, Percent_Identity=29.4736842105263, Blast_Score=87, Evalue=9e-18, Organism=Drosophila melanogaster, GI24639444, Length=190, Percent_Identity=30, Blast_Score=87, Evalue=1e-17, Organism=Drosophila melanogaster, GI281364892, Length=197, Percent_Identity=30.4568527918782, Blast_Score=83, Evalue=1e-16, Organism=Drosophila melanogaster, GI116007238, Length=201, Percent_Identity=31.3432835820896, Blast_Score=81, Evalue=7e-16, Organism=Drosophila melanogaster, GI24640492, Length=192, Percent_Identity=28.125, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI21355319, Length=239, Percent_Identity=26.7782426778243, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI24584748, Length=197, Percent_Identity=27.9187817258883, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI161076933, Length=197, Percent_Identity=27.9187817258883, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI116007232, Length=180, Percent_Identity=33.8888888888889, Blast_Score=73, Evalue=1e-13, Organism=Drosophila melanogaster, GI24640442, Length=189, Percent_Identity=27.5132275132275, Blast_Score=72, Evalue=2e-13, Organism=Drosophila melanogaster, GI24644337, Length=111, Percent_Identity=35.1351351351351, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24584744, Length=200, Percent_Identity=28.5, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI28574402, Length=200, Percent_Identity=28.5, Blast_Score=68, Evalue=4e-12, Organism=Drosophila melanogaster, GI21355631, Length=165, Percent_Identity=27.2727272727273, Blast_Score=68, Evalue=5e-12, Organism=Drosophila melanogaster, GI24649181, Length=195, Percent_Identity=26.1538461538462, Blast_Score=67, Evalue=9e-12,
Paralogues:
None
Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 25592; Mature: 25460
Theoretical pI: Translated: 6.89; Mature: 6.89
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKPLIIITGASSGIGEATARRLSAAGHPLLLLARRIERLEALALPNTLSRRVDITDRAA CCCCEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHH LLAAVAEAEAQFGPADALINNAGVMLLGEMSKQDPAQWDQMLDVNVKGLLNGVHAVVAGM HHHHHHHHHHCCCCHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH IERKHGTIINVSSVAGRKTFPNHVAYVGTKFAVHGLSENLREELSPHNVRVTTIAPGAVE HHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHH TELLSHTTDEAIKTGYQAWKQDMGGTVLSAEDVATAIAYAYGQPQGVCIREIVMAATRQQ HHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC A C >Mature Secondary Structure SKPLIIITGASSGIGEATARRLSAAGHPLLLLARRIERLEALALPNTLSRRVDITDRAA CCCEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHH LLAAVAEAEAQFGPADALINNAGVMLLGEMSKQDPAQWDQMLDVNVKGLLNGVHAVVAGM HHHHHHHHHHCCCCHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH IERKHGTIINVSSVAGRKTFPNHVAYVGTKFAVHGLSENLREELSPHNVRVTTIAPGAVE HHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHH TELLSHTTDEAIKTGYQAWKQDMGGTVLSAEDVATAIAYAYGQPQGVCIREIVMAATRQQ HHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC A C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA