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The map label for this gene is yhjC [H]

Identifier: 77460541

GI number: 77460541

Start: 4876892

End: 4877788

Strand: Reverse

Name: yhjC [H]

Synonym: Pfl01_4320

Alternate gene names: 77460541

Gene position: 4877788-4876892 (Counterclockwise)

Preceding gene: 77460543

Following gene: 77460538

Centisome position: 75.76

GC content: 63.55

Gene sequence:

>897_bases
ATGAACAAACTGGAACTGCTGCGCACCTTCGTCCGGGTCAGCGAATTGTCGAGTTTCACGATGGCGGGAGAGAGTCTCGG
GCTGCCGCGTTCGACGGTCTCCGAGCAGGTGCAGGCGCTGGAAAATCTGCTCGGCACGCGCCTGCTGCAACGCACCACGC
GCAAGGTCCAGCCCACTCAGGACGGCCTCGCGCTGTATGAGCGGAGCAAGGATCTGCTGTCGCACATGGACGAAATCGAA
AACCTGTTCCGTCAGGACGAAGCGTCGCTGACCGGGCGGATCCGGATTGACATGCCGAACATTCTGGCGCGGCGGCTGAT
CATGCCCAAGCTGCCGGAGTTCATGGCGCGCCATCCGAACCTGGAGCTGGAAATCAGCAGCACCGATCGCCGGGTCGACC
TGCTCGCCGAAGGCTTCGATTGCGTGGTGCGCATCGGCGCGCAGCCGGATCAGTCGGTGGTGGCGCGGCACCTGGGGGAC
TTCAGCATGATCAACTGCGCCAGCCCCGCGTACCTGGAGCGCTACGGCGTGCCGCAGACCTTGGAAGATCTGGCGCAGCA
TCGGTTGGTGCACTACGTCGGTGTGCTGGGTTCGCGTTCGGAAGGGTTTGTCTACGAGCAGGACGGACAGGTGCACCGGG
TGCCGATGCCCGGCAGTGTGACGGTCAACAGTACCGATGCCTACGAGTCGGCGTGCCTTGGCGGGTTTGGTCTGATCCAG
GTGCCGCGAACCGGCATGAACACCTATCTGGACAGCGGCGAGATCGTCACCGTGCTGCCGCAGTACACCGCGCCGGCGAT
GGGCATTTCACTGTTGTACGCGAGGCAGCGGCATCTGCCGTTGCGGGTGCGGGTGTTCATGGACTGGCTGGGGGAGTTGA
TTCGTTCGACGCTCTGA

Upstream 100 bases:

>100_bases
GACGGTTGATGGGGCAAAGTTTATTTATCCGCCATGAGGTGATAAACAGACTGAAACCGGAATCACTGGTCGGATTGTCC
GAACAATCAATGGGTGGCAC

Downstream 100 bases:

>100_bases
TTCTTGCCGCAAATCCCTGTGGGAGCAACGGCTCTCACAGGGATTGGGATGGATCAGAAGATCTGGGTAAACAGCCAATA
CAGGCTGCCCGACAGCACAA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MNKLELLRTFVRVSELSSFTMAGESLGLPRSTVSEQVQALENLLGTRLLQRTTRKVQPTQDGLALYERSKDLLSHMDEIE
NLFRQDEASLTGRIRIDMPNILARRLIMPKLPEFMARHPNLELEISSTDRRVDLLAEGFDCVVRIGAQPDQSVVARHLGD
FSMINCASPAYLERYGVPQTLEDLAQHRLVHYVGVLGSRSEGFVYEQDGQVHRVPMPGSVTVNSTDAYESACLGGFGLIQ
VPRTGMNTYLDSGEIVTVLPQYTAPAMGISLLYARQRHLPLRVRVFMDWLGELIRSTL

Sequences:

>Translated_298_residues
MNKLELLRTFVRVSELSSFTMAGESLGLPRSTVSEQVQALENLLGTRLLQRTTRKVQPTQDGLALYERSKDLLSHMDEIE
NLFRQDEASLTGRIRIDMPNILARRLIMPKLPEFMARHPNLELEISSTDRRVDLLAEGFDCVVRIGAQPDQSVVARHLGD
FSMINCASPAYLERYGVPQTLEDLAQHRLVHYVGVLGSRSEGFVYEQDGQVHRVPMPGSVTVNSTDAYESACLGGFGLIQ
VPRTGMNTYLDSGEIVTVLPQYTAPAMGISLLYARQRHLPLRVRVFMDWLGELIRSTL
>Mature_298_residues
MNKLELLRTFVRVSELSSFTMAGESLGLPRSTVSEQVQALENLLGTRLLQRTTRKVQPTQDGLALYERSKDLLSHMDEIE
NLFRQDEASLTGRIRIDMPNILARRLIMPKLPEFMARHPNLELEISSTDRRVDLLAEGFDCVVRIGAQPDQSVVARHLGD
FSMINCASPAYLERYGVPQTLEDLAQHRLVHYVGVLGSRSEGFVYEQDGQVHRVPMPGSVTVNSTDAYESACLGGFGLIQ
VPRTGMNTYLDSGEIVTVLPQYTAPAMGISLLYARQRHLPLRVRVFMDWLGELIRSTL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=298, Percent_Identity=45.3020134228188, Blast_Score=286, Evalue=2e-78,
Organism=Escherichia coli, GI1786401, Length=293, Percent_Identity=31.0580204778157, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI1789639, Length=290, Percent_Identity=27.2413793103448, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1787128, Length=297, Percent_Identity=29.6296296296296, Blast_Score=128, Evalue=4e-31,
Organism=Escherichia coli, GI1787589, Length=285, Percent_Identity=28.7719298245614, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI1789440, Length=293, Percent_Identity=28.3276450511945, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI87081978, Length=297, Percent_Identity=29.6296296296296, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1788706, Length=301, Percent_Identity=25.5813953488372, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1789173, Length=188, Percent_Identity=27.6595744680851, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1786448, Length=293, Percent_Identity=23.2081911262799, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1790011, Length=313, Percent_Identity=20.7667731629393, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788481, Length=294, Percent_Identity=26.530612244898, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788748, Length=124, Percent_Identity=35.4838709677419, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33458; Mature: 33458

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKLELLRTFVRVSELSSFTMAGESLGLPRSTVSEQVQALENLLGTRLLQRTTRKVQPTQ
CCHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
DGLALYERSKDLLSHMDEIENLFRQDEASLTGRIRIDMPNILARRLIMPKLPEFMARHPN
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCHHHHHHCCC
LELEISSTDRRVDLLAEGFDCVVRIGAQPDQSVVARHLGDFSMINCASPAYLERYGVPQT
CEEEECCCCCHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCCEECCCCHHHHHHCCCCHH
LEDLAQHRLVHYVGVLGSRSEGFVYEQDGQVHRVPMPGSVTVNSTDAYESACLGGFGLIQ
HHHHHHHHHHHHHHHHCCCCCCCEECCCCCEEECCCCCCEEECCCHHHHHHHHCCCCEEE
VPRTGMNTYLDSGEIVTVLPQYTAPAMGISLLYARQRHLPLRVRVFMDWLGELIRSTL
ECCCCHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNKLELLRTFVRVSELSSFTMAGESLGLPRSTVSEQVQALENLLGTRLLQRTTRKVQPTQ
CCHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
DGLALYERSKDLLSHMDEIENLFRQDEASLTGRIRIDMPNILARRLIMPKLPEFMARHPN
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCHHHHHHCCC
LELEISSTDRRVDLLAEGFDCVVRIGAQPDQSVVARHLGDFSMINCASPAYLERYGVPQT
CEEEECCCCCHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCCEECCCCHHHHHHCCCCHH
LEDLAQHRLVHYVGVLGSRSEGFVYEQDGQVHRVPMPGSVTVNSTDAYESACLGGFGLIQ
HHHHHHHHHHHHHHHHCCCCCCCEECCCCCEEECCCCCCEEECCCHHHHHHHHCCCCEEE
VPRTGMNTYLDSGEIVTVLPQYTAPAMGISLLYARQRHLPLRVRVFMDWLGELIRSTL
ECCCCHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]