| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is alaS [H]
Identifier: 77460496
GI number: 77460496
Start: 4822883
End: 4825507
Strand: Reverse
Name: alaS [H]
Synonym: Pfl01_4275
Alternate gene names: 77460496
Gene position: 4825507-4822883 (Counterclockwise)
Preceding gene: 77460497
Following gene: 77460495
Centisome position: 74.95
GC content: 61.41
Gene sequence:
>2625_bases ATGAAAAGCGCAGAAATCCGTGAAGCCTTCCTTCGCTTCTTCGAAGAGCAAGGCCACACCCGTGTAGCCTCCAGCTCTTT GATTCCGGGCAACGACCCAACCCTGCTGTTCACCAACGCGGGGATGAACCAGTTCAAGGACTGCTTCCTGGGCCAGGAAA AGCGCGCGTACACCCGCGCCGTCTCCAGCCAGAAATGCGTGCGCGCCGGCGGCAAGCACAATGACCTGGAAAACGTCGGT TACACCGCCCGTCACCACACCTTCTTCGAAATGCTGGGTAACTTCAGCTTTGGCGACTACTTCAAGCGTGATGCCATCAC CTACGCCTGGAACTTCCTGACCTCCGAGAAGTGGCTGAACCTGCCGAAGGAAAAACTGTGGGTCACCGTCTACGCCAGCG ATGACGAGGCCTACGACATCTGGACCAAGGAGGTCGGTGTGCCGGCCGAGCGCATGGTGCGCATCGGCGACAACAAGGGC GCGCCATACGCCTCCGACAACTTCTGGACCATGGGTGATACCGGCCCGTGCGGTCCTTGCACCGAGATTTTCTACGATCA CGGCGCCGACATCTGGGGCGGCCCACCGGGCTCGCCGGAAGAAGACGGCGACCGTTACATCGAAATCTGGAACAACGTAT TCATGCAGTTCAACCGCACCGCCGATGGCGTGTTGCACCCGCTGCCAGCCCCGTCGGTGGACACCGGCATGGGTCTTGAG CGGATCAGTGCCGTGCTGCAGCACGTTCACTCGAACTATGAAATCGACCTGTTCCAGAGCCTGCTGGCCGCATCGGCCAA GGCGATCGGCTGCACCAACGACGCTCAGGCATCGCTGAAAGTCGTGGCTGACCACATCCGTTCCTGCGGCTTCCTGATTG CCGACGGCGTGTTGCCGTCCAACGAGGGTCGCGGTTATGTGCTGCGCCGGATCATCCGTCGCGCCTGCCGTCACGGCAAC AAGCTGGGCGCCAAGGGCAGCTTCTTCTACCTGATCGTTGCCGCACTCGTGGCCGAGATGGGCGAAGCGTTCCCGGAGCT GAAATCCCAGCAGGCGCACATCGAGCGCGTACTGAAAGCCGAAGAAGAACAGTTCGCCAAGACCCTGGAGCAGGGCCTGA AAATCCTCGAGCAGGATCTGGCCGAGCTCAAAGGCGACGTGGTGCCGGGCGACGTGGTGTTCAAACTCTACGACACCTAC GGTTTCCCGATGGACCTGACCGCGGACATCGCCCGCGAGCGTAGCCTGACCATCGACGAAGCCGGTTTCGAGCGTGAAAT GGAAGCCCAGCGCGTCCGTGCACGTTCCGCCAGCTCGTTCGGTCTGGACTACAACAGCCTGGTCAAGGTTGACGTCGATA CCGAGTTCACCGGTTATCACGCCACCAGCGGTTCGGCGAAAGTCGTTGCTCTCTATAAAGATGGCCAGTCCGTGGACGTC TTGAGTGAAGGGCAGGAAGGCGTTGTGGTTCTGAACCAGACCCCTTTCTACGCCGAATCCGGCGGCCAGGTCGGCGATTG CGGTTACCTGCAGGCCGGCAACAGCCGTTTCGACGTGCGCGACACCACCAAGACCGGTGGCGCGTTCCTGCACCACGGCG TACTGGCGTCGGGCAGCCTGATCGTTGGCGCACCGGTGGAAACCCACGTCGAAGCCGACGTGCGTCACGCTACTTCGCTG AACCACTCGGCCACTCACTTGCTGCACGCTGCATTGCGCAAAGTGCTGGGCGACCACGTTCAACAGAAAGGTTCGTTGGT CGACAGTCAGCGCCTGCGTTTCGACTTCAGCCACTTTGAAGCGATCAAGCCGGAGCAGATCAAGGCACTGGAAGACATCG TCAACGCCGAGATCCGCAAGAACTCCGCCGTTGAAACCGAAGAAACCGACATCGAAACCGCCAAGCAGAAAGGCGCGATG GCGCTGTTCGGCGAGAAGTACGGCGACAACGTGCGCGTGCTGAGCATGGGCGGTGATTTCTCCGTCGAGCTGTGCGGCGG TATCCATGCCAACCGTACCGGTGACATCGGTCTGCTGAAAATCATCAGCGAAGGCGGTGTGGCATCGGGTGTGCGTCGTA TCGAAGCGGTCACCGGCGCTGCGGCGCTGGCTTACTTGAACGCTGCTGAAGAACAACTCAAGGAAGCGGCCAGCCTGGTC AAGGGCAGCCGCGACAACCTGATCGACAAGCTGTCGGCGGTGCTGGAGCGCAACCGTGCGCTTGAAAAGCAGCTCGAGCA GTTGCAGGCCAAGGCCGCTGCTGCCGCGGGCGACGATCTGTCGGCCTCGGCCGTGGACGTCAAGGGCGTGAAAGTGCTGG CCGTGCGTCTGGATGGTCAGGACGGCAAGGCGCTGCTGGCGCTGGTCGATCAGCTGAAAAACAAACTCGGCCGCGCAGTG ATCCTGCTCGGCAGTGTCCATGAGGAAAAGGTCGTACTGGTCGCAGGCGTGACCAAGGACCTGACTGGCCAACTCAAAGC CGGTGATTTGATGAAGCAGGCTGCTGCGGCAGTGGGCGGGAAGGGCGGTGGTCGTCCGGACATGGCGCAGGGCGGCGGTG TCGACGCCGGCGCACTGGATGGCGCACTGGCGCTGACCGTTCCATTCGTCGAGCAGGGTTTATAA
Upstream 100 bases:
>100_bases TACCCCGCGCGCAGGGCCGATATAATGCGGCCCTTTGCCGTCGTTTCGTCTGTTGACGTTTCGTACAGGCCTTTGGCCGC AGCCTCCGTGGAAGAACCTA
Downstream 100 bases:
>100_bases GACGGCCCGTCGGGCCCGCAGTCTAGTGGCGGACCCGGCGGCTGTTCGAGTGATTATTGGGCGCCCTTCATGGGCAGAGG CGGCTTTGAAATGGCTTTGA
Product: alanyl-tRNA synthetase
Products: NA
Alternate protein names: Alanine--tRNA ligase; AlaRS [H]
Number of amino acids: Translated: 874; Mature: 874
Protein sequence:
>874_residues MKSAEIREAFLRFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRAVSSQKCVRAGGKHNDLENVG YTARHHTFFEMLGNFSFGDYFKRDAITYAWNFLTSEKWLNLPKEKLWVTVYASDDEAYDIWTKEVGVPAERMVRIGDNKG APYASDNFWTMGDTGPCGPCTEIFYDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE RISAVLQHVHSNYEIDLFQSLLAASAKAIGCTNDAQASLKVVADHIRSCGFLIADGVLPSNEGRGYVLRRIIRRACRHGN KLGAKGSFFYLIVAALVAEMGEAFPELKSQQAHIERVLKAEEEQFAKTLEQGLKILEQDLAELKGDVVPGDVVFKLYDTY GFPMDLTADIARERSLTIDEAGFEREMEAQRVRARSASSFGLDYNSLVKVDVDTEFTGYHATSGSAKVVALYKDGQSVDV LSEGQEGVVVLNQTPFYAESGGQVGDCGYLQAGNSRFDVRDTTKTGGAFLHHGVLASGSLIVGAPVETHVEADVRHATSL NHSATHLLHAALRKVLGDHVQQKGSLVDSQRLRFDFSHFEAIKPEQIKALEDIVNAEIRKNSAVETEETDIETAKQKGAM ALFGEKYGDNVRVLSMGGDFSVELCGGIHANRTGDIGLLKIISEGGVASGVRRIEAVTGAAALAYLNAAEEQLKEAASLV KGSRDNLIDKLSAVLERNRALEKQLEQLQAKAAAAAGDDLSASAVDVKGVKVLAVRLDGQDGKALLALVDQLKNKLGRAV ILLGSVHEEKVVLVAGVTKDLTGQLKAGDLMKQAAAAVGGKGGGRPDMAQGGGVDAGALDGALALTVPFVEQGL
Sequences:
>Translated_874_residues MKSAEIREAFLRFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRAVSSQKCVRAGGKHNDLENVG YTARHHTFFEMLGNFSFGDYFKRDAITYAWNFLTSEKWLNLPKEKLWVTVYASDDEAYDIWTKEVGVPAERMVRIGDNKG APYASDNFWTMGDTGPCGPCTEIFYDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE RISAVLQHVHSNYEIDLFQSLLAASAKAIGCTNDAQASLKVVADHIRSCGFLIADGVLPSNEGRGYVLRRIIRRACRHGN KLGAKGSFFYLIVAALVAEMGEAFPELKSQQAHIERVLKAEEEQFAKTLEQGLKILEQDLAELKGDVVPGDVVFKLYDTY GFPMDLTADIARERSLTIDEAGFEREMEAQRVRARSASSFGLDYNSLVKVDVDTEFTGYHATSGSAKVVALYKDGQSVDV LSEGQEGVVVLNQTPFYAESGGQVGDCGYLQAGNSRFDVRDTTKTGGAFLHHGVLASGSLIVGAPVETHVEADVRHATSL NHSATHLLHAALRKVLGDHVQQKGSLVDSQRLRFDFSHFEAIKPEQIKALEDIVNAEIRKNSAVETEETDIETAKQKGAM ALFGEKYGDNVRVLSMGGDFSVELCGGIHANRTGDIGLLKIISEGGVASGVRRIEAVTGAAALAYLNAAEEQLKEAASLV KGSRDNLIDKLSAVLERNRALEKQLEQLQAKAAAAAGDDLSASAVDVKGVKVLAVRLDGQDGKALLALVDQLKNKLGRAV ILLGSVHEEKVVLVAGVTKDLTGQLKAGDLMKQAAAAVGGKGGGRPDMAQGGGVDAGALDGALALTVPFVEQGL >Mature_874_residues MKSAEIREAFLRFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRAVSSQKCVRAGGKHNDLENVG YTARHHTFFEMLGNFSFGDYFKRDAITYAWNFLTSEKWLNLPKEKLWVTVYASDDEAYDIWTKEVGVPAERMVRIGDNKG APYASDNFWTMGDTGPCGPCTEIFYDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE RISAVLQHVHSNYEIDLFQSLLAASAKAIGCTNDAQASLKVVADHIRSCGFLIADGVLPSNEGRGYVLRRIIRRACRHGN KLGAKGSFFYLIVAALVAEMGEAFPELKSQQAHIERVLKAEEEQFAKTLEQGLKILEQDLAELKGDVVPGDVVFKLYDTY GFPMDLTADIARERSLTIDEAGFEREMEAQRVRARSASSFGLDYNSLVKVDVDTEFTGYHATSGSAKVVALYKDGQSVDV LSEGQEGVVVLNQTPFYAESGGQVGDCGYLQAGNSRFDVRDTTKTGGAFLHHGVLASGSLIVGAPVETHVEADVRHATSL NHSATHLLHAALRKVLGDHVQQKGSLVDSQRLRFDFSHFEAIKPEQIKALEDIVNAEIRKNSAVETEETDIETAKQKGAM ALFGEKYGDNVRVLSMGGDFSVELCGGIHANRTGDIGLLKIISEGGVASGVRRIEAVTGAAALAYLNAAEEQLKEAASLV KGSRDNLIDKLSAVLERNRALEKQLEQLQAKAAAAAGDDLSASAVDVKGVKVLAVRLDGQDGKALLALVDQLKNKLGRAV ILLGSVHEEKVVLVAGVTKDLTGQLKAGDLMKQAAAAVGGKGGGRPDMAQGGGVDAGALDGALALTVPFVEQGL
Specific function: Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction:alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editin
COG id: COG0013
COG function: function code J; Alanyl-tRNA synthetase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II aminoacyl-tRNA synthetase family [H]
Homologues:
Organism=Homo sapiens, GI109148542, Length=978, Percent_Identity=38.6503067484663, Blast_Score=551, Evalue=1e-157, Organism=Homo sapiens, GI38569417, Length=943, Percent_Identity=36.4793213149523, Blast_Score=462, Evalue=1e-130, Organism=Escherichia coli, GI1789048, Length=853, Percent_Identity=66.8229777256741, Blast_Score=1192, Evalue=0.0, Organism=Caenorhabditis elegans, GI17506981, Length=982, Percent_Identity=37.3727087576375, Blast_Score=550, Evalue=1e-157, Organism=Caenorhabditis elegans, GI17536681, Length=751, Percent_Identity=36.0852197070573, Blast_Score=397, Evalue=1e-110, Organism=Saccharomyces cerevisiae, GI6324911, Length=772, Percent_Identity=40.9326424870466, Blast_Score=545, Evalue=1e-156, Organism=Drosophila melanogaster, GI24582809, Length=978, Percent_Identity=37.6278118609407, Blast_Score=560, Evalue=1e-159, Organism=Drosophila melanogaster, GI45552267, Length=978, Percent_Identity=37.6278118609407, Blast_Score=560, Evalue=1e-159, Organism=Drosophila melanogaster, GI24658214, Length=857, Percent_Identity=31.5052508751459, Blast_Score=347, Evalue=3e-95,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002318 - InterPro: IPR018162 - InterPro: IPR018165 - InterPro: IPR018164 - InterPro: IPR023033 - InterPro: IPR003156 - InterPro: IPR018163 - InterPro: IPR012947 [H]
Pfam domain/function: PF02272 DHHA1; PF01411 tRNA-synt_2c; PF07973 tRNA_SAD [H]
EC number: =6.1.1.7 [H]
Molecular weight: Translated: 94387; Mature: 94387
Theoretical pI: Translated: 5.40; Mature: 5.40
Prosite motif: PS50860 AA_TRNA_LIGASE_II_ALA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSAEIREAFLRFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRA CCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCEEEEECCCCHHHHHHHCCCHHHHHHHH VSSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWNFLTSEKWLN HHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHC LPKEKLWVTVYASDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC CCCHHEEEEEEECCCCCEEHHHHHCCCCHHHHEEECCCCCCCCCCCCCEECCCCCCCCHH TEIFYDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHH RISAVLQHVHSNYEIDLFQSLLAASAKAIGCTNDAQASLKVVADHIRSCGFLIADGVLPS HHHHHHHHHHCCCCHHHHHHHHHHCHHHCCCCCCHHHHHHHHHHHHHHCCCEEECCCCCC NEGRGYVLRRIIRRACRHGNKLGAKGSFFYLIVAALVAEMGEAFPELKSQQAHIERVLKA CCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EEEQFAKTLEQGLKILEQDLAELKGDVVPGDVVFKLYDTYGFPMDLTADIARERSLTIDE HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHEEHHHCCCCCCCHHHHHHCCCCEECC AGFEREMEAQRVRARSASSFGLDYNSLVKVDVDTEFTGYHATSGSAKVVALYKDGQSVDV CCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCEEECCCCEEEEEEEECCCEEEH LSEGQEGVVVLNQTPFYAESGGQVGDCGYLQAGNSRFDVRDTTKTGGAFLHHGVLASGSL HCCCCCCEEEEECCCCEECCCCCCCCCCEEECCCCEECCCCCCCCCCHHHHHHHHHCCCE IVGAPVETHVEADVRHATSLNHSATHLLHAALRKVLGDHVQQKGSLVDSQRLRFDFSHFE EEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEEHHHHC AIKPEQIKALEDIVNAEIRKNSAVETEETDIETAKQKGAMALFGEKYGDNVRVLSMGGDF CCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCEEEECCCCCCCEEEEEECCCE SVELCGGIHANRTGDIGLLKIISEGGVASGVRRIEAVTGAAALAYLNAAEEQLKEAASLV EEEEECCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KGSRDNLIDKLSAVLERNRALEKQLEQLQAKAAAAAGDDLSASAVDVKGVKVLAVRLDGQ CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCEEEEEEEECCC DGKALLALVDQLKNKLGRAVILLGSVHEEKVVLVAGVTKDLTGQLKAGDLMKQAAAAVGG CCHHHHHHHHHHHHHHCCEEEEEECCCCCCEEEEEECCHHHCCCCCHHHHHHHHHHHHCC KGGGRPDMAQGGGVDAGALDGALALTVPFVEQGL CCCCCCCCCCCCCCCCCCCCCCCEEEECHHHCCC >Mature Secondary Structure MKSAEIREAFLRFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRA CCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCEEEEECCCCHHHHHHHCCCHHHHHHHH VSSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWNFLTSEKWLN HHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHC LPKEKLWVTVYASDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC CCCHHEEEEEEECCCCCEEHHHHHCCCCHHHHEEECCCCCCCCCCCCCEECCCCCCCCHH TEIFYDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHH RISAVLQHVHSNYEIDLFQSLLAASAKAIGCTNDAQASLKVVADHIRSCGFLIADGVLPS HHHHHHHHHHCCCCHHHHHHHHHHCHHHCCCCCCHHHHHHHHHHHHHHCCCEEECCCCCC NEGRGYVLRRIIRRACRHGNKLGAKGSFFYLIVAALVAEMGEAFPELKSQQAHIERVLKA CCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EEEQFAKTLEQGLKILEQDLAELKGDVVPGDVVFKLYDTYGFPMDLTADIARERSLTIDE HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHEEHHHCCCCCCCHHHHHHCCCCEECC AGFEREMEAQRVRARSASSFGLDYNSLVKVDVDTEFTGYHATSGSAKVVALYKDGQSVDV CCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCEEECCCCEEEEEEEECCCEEEH LSEGQEGVVVLNQTPFYAESGGQVGDCGYLQAGNSRFDVRDTTKTGGAFLHHGVLASGSL HCCCCCCEEEEECCCCEECCCCCCCCCCEEECCCCEECCCCCCCCCCHHHHHHHHHCCCE IVGAPVETHVEADVRHATSLNHSATHLLHAALRKVLGDHVQQKGSLVDSQRLRFDFSHFE EEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEEHHHHC AIKPEQIKALEDIVNAEIRKNSAVETEETDIETAKQKGAMALFGEKYGDNVRVLSMGGDF CCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCEEEECCCCCCCEEEEEECCCE SVELCGGIHANRTGDIGLLKIISEGGVASGVRRIEAVTGAAALAYLNAAEEQLKEAASLV EEEEECCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KGSRDNLIDKLSAVLERNRALEKQLEQLQAKAAAAAGDDLSASAVDVKGVKVLAVRLDGQ CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCEEEEEEEECCC DGKALLALVDQLKNKLGRAVILLGSVHEEKVVLVAGVTKDLTGQLKAGDLMKQAAAAVGG CCHHHHHHHHHHHHHHCCEEEEEECCCCCCEEEEEECCHHHCCCCCHHHHHHHHHHHHCC KGGGRPDMAQGGGVDAGALDGALALTVPFVEQGL CCCCCCCCCCCCCCCCCCCCCCCEEEECHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA