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The map label for this gene is ycaD [C]

Identifier: 77460479

GI number: 77460479

Start: 4803567

End: 4804925

Strand: Reverse

Name: ycaD [C]

Synonym: Pfl01_4258

Alternate gene names: 77460479

Gene position: 4804925-4803567 (Counterclockwise)

Preceding gene: 77460480

Following gene: 77460474

Centisome position: 74.63

GC content: 63.65

Gene sequence:

>1359_bases
ATGCGCCAAATCTGGAAATCCTTTCGAGCGCTGTATTTCGCCTCGCTGATGATGTTGATCGGCTCGGGCCTTCTTTCTAC
TTATCTGGCTTTGCGTCTGGCTGCCGACCATGTCGACGGGTTGTGGGTCGGTGCGTTGATGGCCGCCAACTATTTCGGTC
TGGTGCTGGGCGGCAAGATTGGTCACCGCTTGATTGCCCGGGTCGGGCATATCCGCGCCTACTCGGCGTGTGCCGGGATC
GTCGGCGCGGCGGTGCTCGGTCACGGGCTGGTGGACTGGTTGCCGGCGTGGCTGGTGCTGCGGACCATCGTCGGTCTCGG
CATGATGTGCCAATACATGGTGATCGAGAGCTGGCTGAACGAGCAGGCCGACGCCAATCAGCGCGGTCTGGTGTTCAGTG
GCTACATGATCGCGTCGTACCTGGGGCTGGTGCTCGGTCAGCTGATTCTGGTCATGCACCCGGGCCTTGGCCTGGAACTG
CTGATGCTGGTCGCGCTGTGTTTTGCCCTGTGTCTGGTGCCGGTGGCGCTGACCCGTCGGATTCACCCGGCACCGCTGCA
TCCGGCGCCGATGGAGCCGCGCTTCTTTATCAAGCGTGTGCCGCAGTCGCTGAGCACGGTGCTCGGGGCCGGGCTGATCA
TCGGTTCGTTCTATGGTCTGGCGCCGCTGTATGCCTCCCAGCAGGGGCTGTCCACCGAGCAGGTCGGTCTGTTCATGGGT
AGCTGCATTTTTGCCGGGCTGGTGGTGCAGTGGCCGCTGGGCTGGTTGTCCGACCGCTATGACCGGGCGCTGTTGATCCG
CTGTTTCGCGCTGTTCCTCGCGGTTGCTTCGTTGCCACTGGCGATCCTGCCGCAAGTGCCGCTGGAGGTGCTGTTCGTGG
TCGGCTTCCTCTGTTCGCTGGTGCAGTTCTGCCTGTACCCGTTGGCGGTGGCGTTCTCCAACGACCACGTCGAAGGCGAA
CGTCGGGTGTCGCTGACGGCGATGCTGCTGGTGACCTACGGCGTGGGCGCCAGTATCGGGCCGCTGGTGGCCGGGGTGCT
GATGAAGCTGTTCGGGCCGCAGAGCCTGTACGCGTTCTTCACCTTTTTCGCGCTGGTGCTGGTGTGGCGGATCCGGCCGA
AAGCCGTGACCAATCTGCACCAGGTCGACGATGCACCGCTGCATCACGTGGCGATGCCGGACAGCATGTCCAGCTCGCCG
CTGGTGGCTGCGCTTGATCCGCGGGTGGATGAACAAGTGGTGCAGGAGCAGATGCAGAATACGGTCGCTCCGGAGCCTGA
ACCCGAGCCAGAACCTGTCGCGCCAACCGACTCGACAATCGAAGGCGAAGGGCCGGACATCAGCCCCGCCAGACCGTGA

Upstream 100 bases:

>100_bases
GGGAACGCCGTGTTCTAGCAGCCCAGGCCTGACGAAATGTCGCCGTCGGGCTATCGTTTGATAGCCCGATACTTACTGCA
AGGAGCCGCTCGGAACGCCG

Downstream 100 bases:

>100_bases
TTCAGGCATAAAAAAACGGGCAGTCACCGCAGTGACTGCCCGTTTTTTATGCTTGCCGATCAGAGGTCGTCTTTATCGAA
CCGACGCGCTTCGCGTTGCA

Product: major facilitator transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 452; Mature: 452

Protein sequence:

>452_residues
MRQIWKSFRALYFASLMMLIGSGLLSTYLALRLAADHVDGLWVGALMAANYFGLVLGGKIGHRLIARVGHIRAYSACAGI
VGAAVLGHGLVDWLPAWLVLRTIVGLGMMCQYMVIESWLNEQADANQRGLVFSGYMIASYLGLVLGQLILVMHPGLGLEL
LMLVALCFALCLVPVALTRRIHPAPLHPAPMEPRFFIKRVPQSLSTVLGAGLIIGSFYGLAPLYASQQGLSTEQVGLFMG
SCIFAGLVVQWPLGWLSDRYDRALLIRCFALFLAVASLPLAILPQVPLEVLFVVGFLCSLVQFCLYPLAVAFSNDHVEGE
RRVSLTAMLLVTYGVGASIGPLVAGVLMKLFGPQSLYAFFTFFALVLVWRIRPKAVTNLHQVDDAPLHHVAMPDSMSSSP
LVAALDPRVDEQVVQEQMQNTVAPEPEPEPEPVAPTDSTIEGEGPDISPARP

Sequences:

>Translated_452_residues
MRQIWKSFRALYFASLMMLIGSGLLSTYLALRLAADHVDGLWVGALMAANYFGLVLGGKIGHRLIARVGHIRAYSACAGI
VGAAVLGHGLVDWLPAWLVLRTIVGLGMMCQYMVIESWLNEQADANQRGLVFSGYMIASYLGLVLGQLILVMHPGLGLEL
LMLVALCFALCLVPVALTRRIHPAPLHPAPMEPRFFIKRVPQSLSTVLGAGLIIGSFYGLAPLYASQQGLSTEQVGLFMG
SCIFAGLVVQWPLGWLSDRYDRALLIRCFALFLAVASLPLAILPQVPLEVLFVVGFLCSLVQFCLYPLAVAFSNDHVEGE
RRVSLTAMLLVTYGVGASIGPLVAGVLMKLFGPQSLYAFFTFFALVLVWRIRPKAVTNLHQVDDAPLHHVAMPDSMSSSP
LVAALDPRVDEQVVQEQMQNTVAPEPEPEPEPVAPTDSTIEGEGPDISPARP
>Mature_452_residues
MRQIWKSFRALYFASLMMLIGSGLLSTYLALRLAADHVDGLWVGALMAANYFGLVLGGKIGHRLIARVGHIRAYSACAGI
VGAAVLGHGLVDWLPAWLVLRTIVGLGMMCQYMVIESWLNEQADANQRGLVFSGYMIASYLGLVLGQLILVMHPGLGLEL
LMLVALCFALCLVPVALTRRIHPAPLHPAPMEPRFFIKRVPQSLSTVLGAGLIIGSFYGLAPLYASQQGLSTEQVGLFMG
SCIFAGLVVQWPLGWLSDRYDRALLIRCFALFLAVASLPLAILPQVPLEVLFVVGFLCSLVQFCLYPLAVAFSNDHVEGE
RRVSLTAMLLVTYGVGASIGPLVAGVLMKLFGPQSLYAFFTFFALVLVWRIRPKAVTNLHQVDDAPLHHVAMPDSMSSSP
LVAALDPRVDEQVVQEQMQNTVAPEPEPEPEPVAPTDSTIEGEGPDISPARP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. YcaD (TC 2.A.1.26) family [H]

Homologues:

Organism=Escherichia coli, GI1787126, Length=340, Percent_Identity=29.1176470588235, Blast_Score=138, Evalue=7e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 48999; Mature: 48999

Theoretical pI: Translated: 6.73; Mature: 6.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure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CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA