Click here to switch to the map view.

The map label for this gene is flgD [H]

Identifier: 77460470

GI number: 77460470

Start: 4797140

End: 4797868

Strand: Reverse

Name: flgD [H]

Synonym: Pfl01_4249

Alternate gene names: 77460470

Gene position: 4797868-4797140 (Counterclockwise)

Preceding gene: 77460471

Following gene: 77460469

Centisome position: 74.52

GC content: 61.32

Gene sequence:

>729_bases
ATGAGTGTTTCCGATACCACCAGCAGCCTGACGATGAAGGACATACTGGCCAACTCTTCGAAGAAGACCAGTAGCACCAC
CACCGGCGGCATTGCTTCGGCCACCAATAGCGCGACCGGCGGTCAGGCGCTTGGAAAGGACGCGTTCCTGCAACTGCTGG
TGACCCAGCTGAAGAACCAGAACCCGCTGGACCCGCAGGACAACAGCGCATTCGTTGCCCAGTTGGCGCAGTTCAGCAGC
CTCGAGGGGATCACCACCCTCAACAGCACCGTCAGTTCGCTGGCCGGCAACTACAACTCGTCGCAAGCCCTGCAGGCTTC
GTCGCTGGTGGGCCGCAACGTGATCGTGCAGACCAACACCGCGCAACTCGATGATCCGAGCAAAGGCCTGACCGGTACGG
CGACTGTTCCGTCGTCCATCGCCGGCGGTACCGTGACCATTACCGACAGCAGCGGCAAAACCGTCCGTACCATCGATCTG
GGCAGTCGCGCTGCCGGTCCTGCCAGCTTCACTTGGGACGGCAAGGATTCGTCCGGCACCCTGGTGCCAGTCGGTACTTA
CACCTTCAAGGCCAACGCGTCGATCAACGGCACCGCGACGGACCTGGCAACTTATCTGCCGGCCACCGTCAACAGCGTGA
CGATCAGCCAGACCGGCGGCGAGCTGATGCTCAACCTGTCCGGCAAGGGCACGGTCGCCCTGTCCAAAGTACAAACCATT
GGTATATAG

Upstream 100 bases:

>100_bases
CGCGAGCCGTTCGTTCCAGACCAACGCCGAAATGATGAACACCGCCAAAACCATGATGCAGAAAGTGCTGACCCTCGGTC
AGTGATAAGGGGCGACTGCC

Downstream 100 bases:

>100_bases
AGCCGACTAACCGGCACAAAGGAGTGGAATATGTCTTTCAATATCGGCCTTAGCGGTCTCTATGCAGCCAACAAACAACT
GGACGTGACCGGCAACAACA

Product: flagellar basal body rod modification protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 241

Protein sequence:

>242_residues
MSVSDTTSSLTMKDILANSSKKTSSTTTGGIASATNSATGGQALGKDAFLQLLVTQLKNQNPLDPQDNSAFVAQLAQFSS
LEGITTLNSTVSSLAGNYNSSQALQASSLVGRNVIVQTNTAQLDDPSKGLTGTATVPSSIAGGTVTITDSSGKTVRTIDL
GSRAAGPASFTWDGKDSSGTLVPVGTYTFKANASINGTATDLATYLPATVNSVTISQTGGELMLNLSGKGTVALSKVQTI
GI

Sequences:

>Translated_242_residues
MSVSDTTSSLTMKDILANSSKKTSSTTTGGIASATNSATGGQALGKDAFLQLLVTQLKNQNPLDPQDNSAFVAQLAQFSS
LEGITTLNSTVSSLAGNYNSSQALQASSLVGRNVIVQTNTAQLDDPSKGLTGTATVPSSIAGGTVTITDSSGKTVRTIDL
GSRAAGPASFTWDGKDSSGTLVPVGTYTFKANASINGTATDLATYLPATVNSVTISQTGGELMLNLSGKGTVALSKVQTI
GI
>Mature_241_residues
SVSDTTSSLTMKDILANSSKKTSSTTTGGIASATNSATGGQALGKDAFLQLLVTQLKNQNPLDPQDNSAFVAQLAQFSSL
EGITTLNSTVSSLAGNYNSSQALQASSLVGRNVIVQTNTAQLDDPSKGLTGTATVPSSIAGGTVTITDSSGKTVRTIDLG
SRAAGPASFTWDGKDSSGTLVPVGTYTFKANASINGTATDLATYLPATVNSVTISQTGGELMLNLSGKGTVALSKVQTIG
I

Specific function: Required for flagellar hook formation. May act as a scaffolding protein [H]

COG id: COG1843

COG function: function code N; Flagellar hook capping protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flgD family [H]

Homologues:

Organism=Escherichia coli, GI1787315, Length=201, Percent_Identity=38.8059701492537, Blast_Score=115, Evalue=2e-27,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005648 [H]

Pfam domain/function: PF03963 FlgD [H]

EC number: NA

Molecular weight: Translated: 24405; Mature: 24274

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVSDTTSSLTMKDILANSSKKTSSTTTGGIASATNSATGGQALGKDAFLQLLVTQLKNQ
CCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHCHHHHHHHHHHHHCCC
NPLDPQDNSAFVAQLAQFSSLEGITTLNSTVSSLAGNYNSSQALQASSLVGRNVIVQTNT
CCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCEEEEEECC
AQLDDPSKGLTGTATVPSSIAGGTVTITDSSGKTVRTIDLGSRAAGPASFTWDGKDSSGT
CCCCCCCCCCEECCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCEEECCCCCCCC
LVPVGTYTFKANASINGTATDLATYLPATVNSVTISQTGGELMLNLSGKGTVALSKVQTI
EEEEEEEEEEECCCCCCCHHHHHHHCCCCCCEEEEEECCCEEEEEECCCCEEEEEEEEEE
GI
CC
>Mature Secondary Structure 
SVSDTTSSLTMKDILANSSKKTSSTTTGGIASATNSATGGQALGKDAFLQLLVTQLKNQ
CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHCHHHHHHHHHHHHCCC
NPLDPQDNSAFVAQLAQFSSLEGITTLNSTVSSLAGNYNSSQALQASSLVGRNVIVQTNT
CCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCEEEEEECC
AQLDDPSKGLTGTATVPSSIAGGTVTITDSSGKTVRTIDLGSRAAGPASFTWDGKDSSGT
CCCCCCCCCCEECCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCEEECCCCCCCC
LVPVGTYTFKANASINGTATDLATYLPATVNSVTISQTGGELMLNLSGKGTVALSKVQTI
EEEEEEEEEEECCCCCCCHHHHHHHCCCCCCEEEEEECCCEEEEEECCCCEEEEEEEEEE
GI
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]