| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
Click here to switch to the map view.
The map label for this gene is yxlA [H]
Identifier: 77460357
GI number: 77460357
Start: 4673957
End: 4675423
Strand: Reverse
Name: yxlA [H]
Synonym: Pfl01_4136
Alternate gene names: 77460357
Gene position: 4675423-4673957 (Counterclockwise)
Preceding gene: 77460358
Following gene: 77460356
Centisome position: 72.62
GC content: 63.39
Gene sequence:
>1467_bases ATGAGTTCATCGAACACCGGGCAAAGCGCCGGGCAACTGGAAACCCGGGGCATCGAACCGGTGCCGGAAGGCGAGTGCAA CGGCCATCCGCTGCAACTGTTCTGGGTCTGGTTCGCTGCCAACATTTCCATCCTCGGCCTGCCGCTGGGCGCCACGCTGG TTGCGTTTCGCGGCCTGGCGATCTGGCAGGCAATCATCGTCGCGATCCTCGGCGCTGCCGGTTCGTTCGCGGTGGTGGGG ATCATCTCGATTGCCGGCCGTCGCGGTCGTGCGCCGAGCCTGACTTTGTCGCGGGCGATCTTTGGTGTGCGCGGCAATAT CGGCCCGACGCTGGTGTCGCTGATGTCGCGCCTGGGCTGGGAAACCGTCAACACCACCACCGCCGCGTTCGTGCTGCTGT CGTTGTGCTCGATCCTGTTCGGCTCGCCGGTGGAAGCCAAAAGCGCGCCGGTGCTGACCCTGATTTTCATCGCGATTTTC GTGCTGCTGACCCTGTCGGTGTCCGGCCTCGGCCACGCCACCTTGCTGGTGATCCAGAAGTGGGCGACCTACGTGTTCGG CGCCCTGAACATTCTGGTCGGCGGCTTCCTCTGCGCGACCATCGACTGGAGCGCGGTGTTCAACGCCACGCCGGCACCAA TGAGCGCGATGATCATCGGTATCGGCACCATGGCCGCCGGCACCGGGATCGGCTGGGCCAACGCTGGTGCCGACATGTCG CGCTATCAGCATCACAGTGTCAAAGCCGTGCGCTTGGTGGCTTCGGCGGCGTTCGGTGCGGGGATTCCGCTGGTGTTGCT GATCACCCTCGGCGGCCTGCTGTCGGTGGGCAACAACGATCTGGCGTCGGCGACTGATCCGATCGTGGCGATCCGCGACA TGCTGCCGACCTGGATGGCCGTGCCGTACCTGATCACCGCATTCGGTGGTCTGCTGCTGTCGAACAACCTTTCGGTGTAC TCCGCCGGTCTGACCACGCTGACCCTCGGCCTGAAGGTCAAGCGCGTGTACGCGGTAGTGGTCGACATCGTTGCAATCTT CGCCGGTTCGATCTACTTCATGCTGATCGCCGACAGCTTCTACGGCCCGTTCATTACCTTCATTTCCCTGCTGGCGGTGC CGATCACCGCGTGGGTCGGGATCTTCGTGGTCGACCTGATTCACCGTCACTACTACAGCCCGAAAGACCTGCTCGACGTC AGCCCGAGCAGCGCCTACTGGTACAGCGGTGGCATCGAATGGCGCGCATTCGGCGCCTGGGCGATTGCGATCGTGCTGGG CTTCAGTTTCACCACCATCGGCACCACGGCTGAAAACGTCTGGTTCAAGGGCTTCCTGTCCGACTCGTGGCTGGGCCACA ACGGCCTCGGCTGGATCGTGACGTTTGTGGTCGCTGGCGGCATTTACTTCGTACTCGGCGGGGCGAGAGATCGCCGCGCT GCGCAATCCGAGAATGCTCATGCCTAA
Upstream 100 bases:
>100_bases CCCGCAATGGATCGCGCAGACAGGCCCAGGAAGGGGCGGGATGTCTTGTCGTTCTGCGTCATTGCCACAACCACAATAAA GGCAAACAGGAGCATTTTTC
Downstream 100 bases:
>100_bases GATGTTGCACACCGGCCAGGTCATCATTGACCTGGTCATGGCCGTGGATGCGCTGCCGCAAATTGGCGGTGACGTGCTGG CGCAGTCCGCCAGTTTCGAA
Product: cytosine/purines, uracil, thiamine, allantoin permease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 488; Mature: 487
Protein sequence:
>488_residues MSSSNTGQSAGQLETRGIEPVPEGECNGHPLQLFWVWFAANISILGLPLGATLVAFRGLAIWQAIIVAILGAAGSFAVVG IISIAGRRGRAPSLTLSRAIFGVRGNIGPTLVSLMSRLGWETVNTTTAAFVLLSLCSILFGSPVEAKSAPVLTLIFIAIF VLLTLSVSGLGHATLLVIQKWATYVFGALNILVGGFLCATIDWSAVFNATPAPMSAMIIGIGTMAAGTGIGWANAGADMS RYQHHSVKAVRLVASAAFGAGIPLVLLITLGGLLSVGNNDLASATDPIVAIRDMLPTWMAVPYLITAFGGLLLSNNLSVY SAGLTTLTLGLKVKRVYAVVVDIVAIFAGSIYFMLIADSFYGPFITFISLLAVPITAWVGIFVVDLIHRHYYSPKDLLDV SPSSAYWYSGGIEWRAFGAWAIAIVLGFSFTTIGTTAENVWFKGFLSDSWLGHNGLGWIVTFVVAGGIYFVLGGARDRRA AQSENAHA
Sequences:
>Translated_488_residues MSSSNTGQSAGQLETRGIEPVPEGECNGHPLQLFWVWFAANISILGLPLGATLVAFRGLAIWQAIIVAILGAAGSFAVVG IISIAGRRGRAPSLTLSRAIFGVRGNIGPTLVSLMSRLGWETVNTTTAAFVLLSLCSILFGSPVEAKSAPVLTLIFIAIF VLLTLSVSGLGHATLLVIQKWATYVFGALNILVGGFLCATIDWSAVFNATPAPMSAMIIGIGTMAAGTGIGWANAGADMS RYQHHSVKAVRLVASAAFGAGIPLVLLITLGGLLSVGNNDLASATDPIVAIRDMLPTWMAVPYLITAFGGLLLSNNLSVY SAGLTTLTLGLKVKRVYAVVVDIVAIFAGSIYFMLIADSFYGPFITFISLLAVPITAWVGIFVVDLIHRHYYSPKDLLDV SPSSAYWYSGGIEWRAFGAWAIAIVLGFSFTTIGTTAENVWFKGFLSDSWLGHNGLGWIVTFVVAGGIYFVLGGARDRRA AQSENAHA >Mature_487_residues SSSNTGQSAGQLETRGIEPVPEGECNGHPLQLFWVWFAANISILGLPLGATLVAFRGLAIWQAIIVAILGAAGSFAVVGI ISIAGRRGRAPSLTLSRAIFGVRGNIGPTLVSLMSRLGWETVNTTTAAFVLLSLCSILFGSPVEAKSAPVLTLIFIAIFV LLTLSVSGLGHATLLVIQKWATYVFGALNILVGGFLCATIDWSAVFNATPAPMSAMIIGIGTMAAGTGIGWANAGADMSR YQHHSVKAVRLVASAAFGAGIPLVLLITLGGLLSVGNNDLASATDPIVAIRDMLPTWMAVPYLITAFGGLLLSNNLSVYS AGLTTLTLGLKVKRVYAVVVDIVAIFAGSIYFMLIADSFYGPFITFISLLAVPITAWVGIFVVDLIHRHYYSPKDLLDVS PSSAYWYSGGIEWRAFGAWAIAIVLGFSFTTIGTTAENVWFKGFLSDSWLGHNGLGWIVTFVVAGGIYFVLGGARDRRAA QSENAHA
Specific function: Unknown
COG id: COG1457
COG function: function code F; Purine-cytosine permease and related proteins
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the purine-cytosine permease family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001248 [H]
Pfam domain/function: PF02133 Transp_cyt_pur [H]
EC number: NA
Molecular weight: Translated: 51422; Mature: 51290
Theoretical pI: Translated: 8.74; Mature: 8.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSSNTGQSAGQLETRGIEPVPEGECNGHPLQLFWVWFAANISILGLPLGATLVAFRGLA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHEEHHCCCEEEEECHHHHHHHHHHHH IWQAIIVAILGAAGSFAVVGIISIAGRRGRAPSLTLSRAIFGVRGNIGPTLVSLMSRLGW HHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHCCC ETVNTTTAAFVLLSLCSILFGSPVEAKSAPVLTLIFIAIFVLLTLSVSGLGHATLLVIQK CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH WATYVFGALNILVGGFLCATIDWSAVFNATPAPMSAMIIGIGTMAAGTGIGWANAGADMS HHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCHHHHHEEHHHHHCCCCCCCCCCCCHHH RYQHHSVKAVRLVASAAFGAGIPLVLLITLGGLLSVGNNDLASATDPIVAIRDMLPTWMA HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH VPYLITAFGGLLLSNNLSVYSAGLTTLTLGLKVKRVYAVVVDIVAIFAGSIYFMLIADSF HHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YGPFITFISLLAVPITAWVGIFVVDLIHRHYYSPKDLLDVSPSSAYWYSGGIEWRAFGAW CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCEEECCCCEEEEHHHH AIAIVLGFSFTTIGTTAENVWFKGFLSDSWLGHNGLGWIVTFVVAGGIYFVLGGARDRRA HHHHHHHHHHHCCCCCHHHHEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEECCCCHHHH AQSENAHA HCCCCCCC >Mature Secondary Structure SSSNTGQSAGQLETRGIEPVPEGECNGHPLQLFWVWFAANISILGLPLGATLVAFRGLA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHEEHHCCCEEEEECHHHHHHHHHHHH IWQAIIVAILGAAGSFAVVGIISIAGRRGRAPSLTLSRAIFGVRGNIGPTLVSLMSRLGW HHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHCCC ETVNTTTAAFVLLSLCSILFGSPVEAKSAPVLTLIFIAIFVLLTLSVSGLGHATLLVIQK CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH WATYVFGALNILVGGFLCATIDWSAVFNATPAPMSAMIIGIGTMAAGTGIGWANAGADMS HHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCHHHHHEEHHHHHCCCCCCCCCCCCHHH RYQHHSVKAVRLVASAAFGAGIPLVLLITLGGLLSVGNNDLASATDPIVAIRDMLPTWMA HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH VPYLITAFGGLLLSNNLSVYSAGLTTLTLGLKVKRVYAVVVDIVAIFAGSIYFMLIADSF HHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YGPFITFISLLAVPITAWVGIFVVDLIHRHYYSPKDLLDVSPSSAYWYSGGIEWRAFGAW CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCEEECCCCEEEEHHHH AIAIVLGFSFTTIGTTAENVWFKGFLSDSWLGHNGLGWIVTFVVAGGIYFVLGGARDRRA HHHHHHHHHHHCCCCCHHHHEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEECCCCHHHH AQSENAHA HCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8969509; 9384377 [H]