| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is ephD [H]
Identifier: 77460327
GI number: 77460327
Start: 4647806
End: 4648693
Strand: Reverse
Name: ephD [H]
Synonym: Pfl01_4106
Alternate gene names: 77460327
Gene position: 4648693-4647806 (Counterclockwise)
Preceding gene: 77460329
Following gene: 77460326
Centisome position: 72.2
GC content: 60.81
Gene sequence:
>888_bases ATGGAGCGTGGGTCGCCCCGTATCCTTCGCTACACTCCGCGCATCTTCCCCGGAACAACAAGGCTGTCTGCTATGCAAAA TCGCATGATGATCACTGGCGCGGGCTCAGGCCTGGGTCGCGAAATCGCGCTGCGCTGGGCGCGTGAAGGCTGGCAACTGG CCTTGTCCGACGTCAGCGAGCCCGGTTTGCAAGAGACCCTGAAGCTGGTTCGCGAGGCCGGCGGCGACGGCTTCATCCAG CGCTGCGACGTGCGCGATTACAGCCAGCTGACCGCGTTTGCCCAGGCTTGCGAAGTGAAACTTGGCGGCATCGACATCAT CGTCAACAACGCCGGTGTCGCCTCGGGCGGTTTCTTCAGCGAGCTGTCGCTGGAGGACTGGGACTGGCAGATCGCGATCA ACCTGATGGGCGTGGTCAAGGGTTGCAAGGCGTTCCTGCCGCTGCTGGAGCAGAGCAAGGGCAAGATCATCAATATCGCG TCCATGGCCGCGCTGATGCAGGGCCCGGCGATGAGTAACTACAACGTGGCCAAGGCCGGGGTAGTGGCGCTGTCGGAGAG CCTGTTGATCGAACTGGCCCAACAGGAAGTCGGGGTTCATGTGGTCTGCCCGTCGTTCTTCCAGACCAATCTGCTGGATT CTTTCCGTGGCCCGACGCCGGCGATGAAAACCCAGGTCGGCAAGTTGCTGGAAAGTTCGCCGATCACCGCCAGCGATATT GCCGATTACATCTACAAGCAGGTCGCGGCCGGCGAGTTCATGATCCTGCCCCACGAACAAGGGCGCATGGCCTGGGCGCT CAAACAGAAGAATCCGCAGCTGCTGTACAACGAAATGACCGCAATGGCCGAAAAGATGCGCGCCAAGTCCAAACAGAACA ACGGCTGA
Upstream 100 bases:
>100_bases CTGGTGCGCATGAAAGAAAATTCAATGTTTTTTTAAGGTATTTGGCTCGCGCTCTTATTTCGTTTGCTGTCGCGGTTTGC TCTCGCCATTCAGCAATCTG
Downstream 100 bases:
>100_bases ACTTGCCCGGGGTTCGCCGCATCGTTAGGGTGGCCGCAACAGTCACCCTGACGAGATGTCTTGCATGCTCAATTACCTGT GGTTCTTCCTCGCCGCGCTG
Product: short chain dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 295; Mature: 295
Protein sequence:
>295_residues MERGSPRILRYTPRIFPGTTRLSAMQNRMMITGAGSGLGREIALRWAREGWQLALSDVSEPGLQETLKLVREAGGDGFIQ RCDVRDYSQLTAFAQACEVKLGGIDIIVNNAGVASGGFFSELSLEDWDWQIAINLMGVVKGCKAFLPLLEQSKGKIINIA SMAALMQGPAMSNYNVAKAGVVALSESLLIELAQQEVGVHVVCPSFFQTNLLDSFRGPTPAMKTQVGKLLESSPITASDI ADYIYKQVAAGEFMILPHEQGRMAWALKQKNPQLLYNEMTAMAEKMRAKSKQNNG
Sequences:
>Translated_295_residues MERGSPRILRYTPRIFPGTTRLSAMQNRMMITGAGSGLGREIALRWAREGWQLALSDVSEPGLQETLKLVREAGGDGFIQ RCDVRDYSQLTAFAQACEVKLGGIDIIVNNAGVASGGFFSELSLEDWDWQIAINLMGVVKGCKAFLPLLEQSKGKIINIA SMAALMQGPAMSNYNVAKAGVVALSESLLIELAQQEVGVHVVCPSFFQTNLLDSFRGPTPAMKTQVGKLLESSPITASDI ADYIYKQVAAGEFMILPHEQGRMAWALKQKNPQLLYNEMTAMAEKMRAKSKQNNG >Mature_295_residues MERGSPRILRYTPRIFPGTTRLSAMQNRMMITGAGSGLGREIALRWAREGWQLALSDVSEPGLQETLKLVREAGGDGFIQ RCDVRDYSQLTAFAQACEVKLGGIDIIVNNAGVASGGFFSELSLEDWDWQIAINLMGVVKGCKAFLPLLEQSKGKIINIA SMAALMQGPAMSNYNVAKAGVVALSESLLIELAQQEVGVHVVCPSFFQTNLLDSFRGPTPAMKTQVGKLLESSPITASDI ADYIYKQVAAGEFMILPHEQGRMAWALKQKNPQLLYNEMTAMAEKMRAKSKQNNG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI310128830, Length=206, Percent_Identity=30.5825242718447, Blast_Score=100, Evalue=1e-21, Organism=Homo sapiens, GI310115468, Length=206, Percent_Identity=30.5825242718447, Blast_Score=100, Evalue=1e-21, Organism=Homo sapiens, GI40807363, Length=215, Percent_Identity=30.6976744186047, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI40254992, Length=220, Percent_Identity=29.5454545454545, Blast_Score=93, Evalue=3e-19, Organism=Homo sapiens, GI25282469, Length=247, Percent_Identity=31.1740890688259, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI15277342, Length=204, Percent_Identity=31.8627450980392, Blast_Score=88, Evalue=7e-18, Organism=Homo sapiens, GI32483357, Length=203, Percent_Identity=30.5418719211823, Blast_Score=83, Evalue=3e-16, Organism=Homo sapiens, GI142976729, Length=229, Percent_Identity=28.82096069869, Blast_Score=82, Evalue=6e-16, Organism=Homo sapiens, GI20149619, Length=282, Percent_Identity=28.3687943262411, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI5031737, Length=206, Percent_Identity=29.6116504854369, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI44680136, Length=101, Percent_Identity=41.5841584158416, Blast_Score=79, Evalue=7e-15, Organism=Homo sapiens, GI44680133, Length=101, Percent_Identity=41.5841584158416, Blast_Score=79, Evalue=7e-15, Organism=Homo sapiens, GI17738292, Length=101, Percent_Identity=41.5841584158416, Blast_Score=79, Evalue=7e-15, Organism=Homo sapiens, GI66933014, Length=184, Percent_Identity=32.0652173913043, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI33667109, Length=205, Percent_Identity=29.2682926829268, Blast_Score=76, Evalue=4e-14, Organism=Homo sapiens, GI31542939, Length=196, Percent_Identity=32.1428571428571, Blast_Score=76, Evalue=5e-14, Organism=Homo sapiens, GI4504505, Length=187, Percent_Identity=27.2727272727273, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI210032110, Length=231, Percent_Identity=25.1082251082251, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI7706318, Length=190, Percent_Identity=28.4210526315789, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI126723191, Length=192, Percent_Identity=30.7291666666667, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI4503817, Length=183, Percent_Identity=26.775956284153, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI40254986, Length=221, Percent_Identity=29.4117647058824, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI31543615, Length=187, Percent_Identity=31.5508021390374, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI4504503, Length=211, Percent_Identity=28.436018957346, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI22507405, Length=266, Percent_Identity=26.6917293233083, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI38348362, Length=177, Percent_Identity=28.8135593220339, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI40548397, Length=198, Percent_Identity=29.2929292929293, Blast_Score=66, Evalue=5e-11, Organism=Homo sapiens, GI214010158, Length=198, Percent_Identity=29.2929292929293, Blast_Score=66, Evalue=5e-11, Organism=Homo sapiens, GI214010156, Length=198, Percent_Identity=29.2929292929293, Blast_Score=66, Evalue=5e-11, Organism=Homo sapiens, GI22758144, Length=198, Percent_Identity=29.2929292929293, Blast_Score=66, Evalue=5e-11, Organism=Escherichia coli, GI87082100, Length=193, Percent_Identity=37.3056994818653, Blast_Score=112, Evalue=3e-26, Organism=Escherichia coli, GI1787335, Length=239, Percent_Identity=29.7071129707113, Blast_Score=94, Evalue=7e-21, Organism=Escherichia coli, GI1787905, Length=207, Percent_Identity=29.951690821256, Blast_Score=89, Evalue=4e-19, Organism=Escherichia coli, GI1790717, Length=184, Percent_Identity=26.0869565217391, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1789208, Length=191, Percent_Identity=29.8429319371728, Blast_Score=81, Evalue=1e-16, Organism=Escherichia coli, GI2367175, Length=193, Percent_Identity=26.9430051813472, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1789378, Length=201, Percent_Identity=27.363184079602, Blast_Score=75, Evalue=7e-15, Organism=Escherichia coli, GI1789057, Length=211, Percent_Identity=27.4881516587678, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI87082160, Length=185, Percent_Identity=28.1081081081081, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1787820, Length=180, Percent_Identity=31.6666666666667, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1788459, Length=188, Percent_Identity=26.5957446808511, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1786701, Length=219, Percent_Identity=26.9406392694064, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1786812, Length=182, Percent_Identity=29.6703296703297, Blast_Score=63, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17564282, Length=221, Percent_Identity=31.2217194570136, Blast_Score=112, Evalue=2e-25, Organism=Caenorhabditis elegans, GI193203117, Length=197, Percent_Identity=32.994923857868, Blast_Score=108, Evalue=3e-24, Organism=Caenorhabditis elegans, GI193203115, Length=197, Percent_Identity=32.994923857868, Blast_Score=108, Evalue=4e-24, Organism=Caenorhabditis elegans, GI17562910, Length=194, Percent_Identity=34.020618556701, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17508895, Length=193, Percent_Identity=27.979274611399, Blast_Score=92, Evalue=4e-19, Organism=Caenorhabditis elegans, GI71994604, Length=185, Percent_Identity=28.1081081081081, Blast_Score=88, Evalue=5e-18, Organism=Caenorhabditis elegans, GI71994600, Length=186, Percent_Identity=27.9569892473118, Blast_Score=86, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17567345, Length=166, Percent_Identity=33.1325301204819, Blast_Score=85, Evalue=5e-17, Organism=Caenorhabditis elegans, GI17559104, Length=192, Percent_Identity=30.7291666666667, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17551412, Length=190, Percent_Identity=30.5263157894737, Blast_Score=80, Evalue=9e-16, Organism=Caenorhabditis elegans, GI17507613, Length=210, Percent_Identity=28.5714285714286, Blast_Score=80, Evalue=2e-15, Organism=Caenorhabditis elegans, GI32563809, Length=210, Percent_Identity=28.5714285714286, Blast_Score=80, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17562904, Length=201, Percent_Identity=28.8557213930348, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI25147288, Length=230, Percent_Identity=26.0869565217391, Blast_Score=77, Evalue=8e-15, Organism=Caenorhabditis elegans, GI17563726, Length=201, Percent_Identity=30.3482587064677, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17562990, Length=199, Percent_Identity=30.1507537688442, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17560220, Length=203, Percent_Identity=30.0492610837438, Blast_Score=76, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17557780, Length=197, Percent_Identity=29.4416243654822, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17538486, Length=215, Percent_Identity=28.3720930232558, Blast_Score=74, Evalue=7e-14, Organism=Caenorhabditis elegans, GI17538480, Length=199, Percent_Identity=28.643216080402, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI115534660, Length=217, Percent_Identity=27.6497695852535, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17560150, Length=202, Percent_Identity=28.2178217821782, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17568967, Length=224, Percent_Identity=25.4464285714286, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI71982365, Length=164, Percent_Identity=32.3170731707317, Blast_Score=70, Evalue=9e-13, Organism=Caenorhabditis elegans, GI193204405, Length=211, Percent_Identity=27.9620853080569, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17560332, Length=201, Percent_Identity=27.8606965174129, Blast_Score=69, Evalue=4e-12, Organism=Caenorhabditis elegans, GI72000259, Length=210, Percent_Identity=29.0476190476191, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17565030, Length=202, Percent_Identity=26.7326732673267, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17558628, Length=164, Percent_Identity=32.9268292682927, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17544670, Length=248, Percent_Identity=26.6129032258064, Blast_Score=64, Evalue=7e-11, Organism=Caenorhabditis elegans, GI17561402, Length=190, Percent_Identity=27.8947368421053, Blast_Score=64, Evalue=9e-11, Organism=Saccharomyces cerevisiae, GI6322861, Length=198, Percent_Identity=27.7777777777778, Blast_Score=77, Evalue=3e-15, Organism=Saccharomyces cerevisiae, GI6323882, Length=247, Percent_Identity=26.7206477732794, Blast_Score=74, Evalue=3e-14, Organism=Drosophila melanogaster, GI23397609, Length=189, Percent_Identity=35.4497354497354, Blast_Score=98, Evalue=5e-21, Organism=Drosophila melanogaster, GI21355631, Length=171, Percent_Identity=33.9181286549708, Blast_Score=89, Evalue=4e-18, Organism=Drosophila melanogaster, GI28571526, Length=192, Percent_Identity=30.7291666666667, Blast_Score=88, Evalue=6e-18, Organism=Drosophila melanogaster, GI24649181, Length=269, Percent_Identity=26.7657992565056, Blast_Score=87, Evalue=1e-17, Organism=Drosophila melanogaster, GI18859837, Length=189, Percent_Identity=30.1587301587302, Blast_Score=85, Evalue=5e-17, Organism=Drosophila melanogaster, GI21357041, Length=184, Percent_Identity=30.9782608695652, Blast_Score=85, Evalue=5e-17, Organism=Drosophila melanogaster, GI21357673, Length=205, Percent_Identity=30.2439024390244, Blast_Score=82, Evalue=4e-16, Organism=Drosophila melanogaster, GI24640492, Length=199, Percent_Identity=29.1457286432161, Blast_Score=81, Evalue=1e-15, Organism=Drosophila melanogaster, GI24581726, Length=201, Percent_Identity=28.3582089552239, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI281364892, Length=168, Percent_Identity=31.547619047619, Blast_Score=78, Evalue=8e-15, Organism=Drosophila melanogaster, GI24644339, Length=209, Percent_Identity=28.7081339712919, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI24640442, Length=210, Percent_Identity=28.5714285714286, Blast_Score=76, Evalue=3e-14, Organism=Drosophila melanogaster, GI221510726, Length=192, Percent_Identity=30.7291666666667, Blast_Score=75, Evalue=8e-14, Organism=Drosophila melanogaster, GI24584748, Length=190, Percent_Identity=28.4210526315789, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI161076933, Length=190, Percent_Identity=28.4210526315789, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI17737361, Length=196, Percent_Identity=29.0816326530612, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI24639444, Length=188, Percent_Identity=28.1914893617021, Blast_Score=71, Evalue=9e-13, Organism=Drosophila melanogaster, GI21358495, Length=276, Percent_Identity=23.9130434782609, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI28574402, Length=188, Percent_Identity=28.7234042553192, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI24584744, Length=188, Percent_Identity=28.7234042553192, Blast_Score=67, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000073 - InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00561 Abhydrolase_1; PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 32220; Mature: 32220
Theoretical pI: Translated: 8.30; Mature: 8.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 4.7 %Met (Translated Protein) 6.1 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 4.7 %Met (Mature Protein) 6.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MERGSPRILRYTPRIFPGTTRLSAMQNRMMITGAGSGLGREIALRWAREGWQLALSDVSE CCCCCCCEEEECCCCCCCCHHHHHHHCCEEEEECCCCCCHHHHHHHHHCCHHHHHHHCCC PGLQETLKLVREAGGDGFIQRCDVRDYSQLTAFAQACEVKLGGIDIIVNNAGVASGGFFS CCHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHEEECCEEEEEECCCCCCCCCEE ELSLEDWDWQIAINLMGVVKGCKAFLPLLEQSKGKIINIASMAALMQGPAMSNYNVAKAG ECCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHCCCCCCCCCHHHHH VVALSESLLIELAQQEVGVHVVCPSFFQTNLLDSFRGPTPAMKTQVGKLLESSPITASDI HHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHH ADYIYKQVAAGEFMILPHEQGRMAWALKQKNPQLLYNEMTAMAEKMRAKSKQNNG HHHHHHHHCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MERGSPRILRYTPRIFPGTTRLSAMQNRMMITGAGSGLGREIALRWAREGWQLALSDVSE CCCCCCCEEEECCCCCCCCHHHHHHHCCEEEEECCCCCCHHHHHHHHHCCHHHHHHHCCC PGLQETLKLVREAGGDGFIQRCDVRDYSQLTAFAQACEVKLGGIDIIVNNAGVASGGFFS CCHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHEEECCEEEEEECCCCCCCCCEE ELSLEDWDWQIAINLMGVVKGCKAFLPLLEQSKGKIINIASMAALMQGPAMSNYNVAKAG ECCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHCCCCCCCCCHHHHH VVALSESLLIELAQQEVGVHVVCPSFFQTNLLDSFRGPTPAMKTQVGKLLESSPITASDI HHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHH ADYIYKQVAAGEFMILPHEQGRMAWALKQKNPQLLYNEMTAMAEKMRAKSKQNNG HHHHHHHHCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12788972 [H]