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The map label for this gene is ybaV [C]

Identifier: 77460262

GI number: 77460262

Start: 4566853

End: 4567188

Strand: Reverse

Name: ybaV [C]

Synonym: Pfl01_4041

Alternate gene names: 77460262

Gene position: 4567188-4566853 (Counterclockwise)

Preceding gene: 77460263

Following gene: 77460261

Centisome position: 70.94

GC content: 56.55

Gene sequence:

>336_bases
ATGCGTACCGGTTATTTCTACTCGTTGCTCTTCGCTTTTCTCGCCAGCGCCTCGATTGCCGCCGTTGCGGCGCCAGGGGT
GTCCTCCGAGAACATCAGGGCGCCATTGGTGCTTGACGCTGCCGCTTCATCCCAAAGCGAAAAGGTCGATCTCAACGGTG
CCGATGCAGCGACGCTGCAAAAGGAGTTGGCCGGGGTGGGAGAGGCGAAGGCAAAAGCGATTGTTGCCTATCGTGAGGCT
AATGGACCTTTTGCATCGGTGGACGAACTGCTTGAAGTGAAAGGTATCGGCAAGGCGATCCTCGATCGCAATCGCGACAA
GCTGGAAGTGAACTAA

Upstream 100 bases:

>100_bases
CGGTAACAGATGCGTTTTTGACATCGCCCATCCATCGCCTAAGTTTGAGAGGCAGCTTCGGAAAAGCTGCTTTCTCAAAA
CATGTCATGGAGCGTCAATT

Downstream 100 bases:

>100_bases
GCTGATTGTTCAACGCCAAGGGGCCGGTCATTGACCGGCCCTTTTTGCTTCCGGGTTCCTTGAACCGTCGAAGGAGGTGG
ATTGCCTTTCCGTCGGATAA

Product: competence protein ComEA helix-hairpin-helix region

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 111; Mature: 111

Protein sequence:

>111_residues
MRTGYFYSLLFAFLASASIAAVAAPGVSSENIRAPLVLDAAASSQSEKVDLNGADAATLQKELAGVGEAKAKAIVAYREA
NGPFASVDELLEVKGIGKAILDRNRDKLEVN

Sequences:

>Translated_111_residues
MRTGYFYSLLFAFLASASIAAVAAPGVSSENIRAPLVLDAAASSQSEKVDLNGADAATLQKELAGVGEAKAKAIVAYREA
NGPFASVDELLEVKGIGKAILDRNRDKLEVN
>Mature_111_residues
MRTGYFYSLLFAFLASASIAAVAAPGVSSENIRAPLVLDAAASSQSEKVDLNGADAATLQKELAGVGEAKAKAIVAYREA
NGPFASVDELLEVKGIGKAILDRNRDKLEVN

Specific function: Unknown

COG id: COG1555

COG function: function code L; DNA uptake protein and related DNA-binding proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HhH domains [H]

Homologues:

Organism=Escherichia coli, GI1786646, Length=105, Percent_Identity=36.1904761904762, Blast_Score=59, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004509
- InterPro:   IPR003583 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 11569; Mature: 11569

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTGYFYSLLFAFLASASIAAVAAPGVSSENIRAPLVLDAAASSQSEKVDLNGADAATLQ
CCCCHHHHHHHHHHHCCHHHEEECCCCCCCCCCCCEEEECCCCCCCCEECCCCCCHHHHH
KELAGVGEAKAKAIVAYREANGPFASVDELLEVKGIGKAILDRNRDKLEVN
HHHHCCCCCCHHEEEEEECCCCCHHHHHHHHHHHCCCHHHHCCCCCEEECC
>Mature Secondary Structure
MRTGYFYSLLFAFLASASIAAVAAPGVSSENIRAPLVLDAAASSQSEKVDLNGADAATLQ
CCCCHHHHHHHHHHHCCHHHEEECCCCCCCCCCCCEEEECCCCCCCCEECCCCCCHHHHH
KELAGVGEAKAKAIVAYREANGPFASVDELLEVKGIGKAILDRNRDKLEVN
HHHHCCCCCCHHEEEEEECCCCCHHHHHHHHHHHCCCHHHHCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]