Click here to switch to the map view.

The map label for this gene is ychK [C]

Identifier: 77460248

GI number: 77460248

Start: 4551039

End: 4552076

Strand: Direct

Name: ychK [C]

Synonym: Pfl01_4027

Alternate gene names: 77460248

Gene position: 4551039-4552076 (Clockwise)

Preceding gene: 77460244

Following gene: 77460255

Centisome position: 70.69

GC content: 60.89

Gene sequence:

>1038_bases
ATGAAAAAGCGTGTCGCACTGGTGCTGGGCTCCGGTGGCGCCCGGGGCTATGCCCATATCGGGGTCATTGAAGAGATCGA
ACGACGGGGCTATGACATCAGTTGTATTGCCGGCTGTTCAATGGGGGCCGTGGTCGGCGGAATCTACGCCGCCGGCAAGC
TCGACGAGTACCGCAACTGGATCGAAAGCCTGGATTATCTCGACGTGCTGCGTCTGGTGGACGTCAGCTTCCGCCTCGGT
GCGATCCGTGGCGAAAAAGTCTTCGGCCAGATCCGCAAGATCGTCGGCGAGATCAACATCGAAGACCTGCGCATTCCCTA
CACCGCCGTAGCCGCCGACCTCACCAACCAGCAGGAAATCTGGTTCCAGGAAGGCTGCCTGCATCAGGCCATGCGAGCTT
CGGCGGCGATTCCCAGCCTGTTCACCCCGGTGATGCAGGGCAACCGGATGCTGGTGGACGGCGGCATTCTCAACCCGTTG
CCGATCGTGCCGGTGGTGTCGAGCCATTGCGACCTGATCATCGCGGTCAATCTCAACTCGACCAACCAGCGCCATTACAA
ATTGCCGGTGATCCAGCGCCCTGCCGCGTTCCGCACGCGCTTCGACAGTCTGATCAGTTCACTCGGTTCGAAGATGCCGT
TCCGCCGCAAACAGGCCGAGCAATTGCTGTTGCTGGAACAGGAAGCGTTGCGTGCCGAAGCGGCGGAAATCAATCCGTGG
GTCGAAAGTGCCGAGCCGGAAGCCCAGCAACCCGCCGCCGCGCCTGAACGCGACGGCGCACCGAAATCCGCCACCGGATC
GTTCATCGTCGATAACGTCGGGCCGGCTTCATTGCTTGATCTGATCAACCAGAGTTTCGAGGTGATGCAGACCTCTCTGG
CGCAGTACAAGATCGCCGGGTATCCGCCGGACATCCTGATCAACGTGCCGAAGCGGGTGTGCCGGTTCTTCGAGTTCTAC
AAGGCGCCGGAGCTGATTGCGCTGGGTCGCGAGATTGCCCGGGATACGCTGGATCGCTACGAGAGCGAGCAGAACTGA

Upstream 100 bases:

>100_bases
AGTATCGAAAAAACGACGCCATCGCCGCCCCGAGCGACCCCGCCGATTGAAGCCCGGCCCTCGATGGGTGCATTGTGCAA
CCTTGTCGGGAGGAAGTTGG

Downstream 100 bases:

>100_bases
GGAGCGTGAAGGGCATGAGTCGGCTCCGGGAGCGGGTGTCAGCTCCCGAAGCCAACTGCGGTCCTCGCAGGCGAGTCTCT
AAAGGTTCCTACCCAAAGCG

Product: patatin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 345; Mature: 345

Protein sequence:

>345_residues
MKKRVALVLGSGGARGYAHIGVIEEIERRGYDISCIAGCSMGAVVGGIYAAGKLDEYRNWIESLDYLDVLRLVDVSFRLG
AIRGEKVFGQIRKIVGEINIEDLRIPYTAVAADLTNQQEIWFQEGCLHQAMRASAAIPSLFTPVMQGNRMLVDGGILNPL
PIVPVVSSHCDLIIAVNLNSTNQRHYKLPVIQRPAAFRTRFDSLISSLGSKMPFRRKQAEQLLLLEQEALRAEAAEINPW
VESAEPEAQQPAAAPERDGAPKSATGSFIVDNVGPASLLDLINQSFEVMQTSLAQYKIAGYPPDILINVPKRVCRFFEFY
KAPELIALGREIARDTLDRYESEQN

Sequences:

>Translated_345_residues
MKKRVALVLGSGGARGYAHIGVIEEIERRGYDISCIAGCSMGAVVGGIYAAGKLDEYRNWIESLDYLDVLRLVDVSFRLG
AIRGEKVFGQIRKIVGEINIEDLRIPYTAVAADLTNQQEIWFQEGCLHQAMRASAAIPSLFTPVMQGNRMLVDGGILNPL
PIVPVVSSHCDLIIAVNLNSTNQRHYKLPVIQRPAAFRTRFDSLISSLGSKMPFRRKQAEQLLLLEQEALRAEAAEINPW
VESAEPEAQQPAAAPERDGAPKSATGSFIVDNVGPASLLDLINQSFEVMQTSLAQYKIAGYPPDILINVPKRVCRFFEFY
KAPELIALGREIARDTLDRYESEQN
>Mature_345_residues
MKKRVALVLGSGGARGYAHIGVIEEIERRGYDISCIAGCSMGAVVGGIYAAGKLDEYRNWIESLDYLDVLRLVDVSFRLG
AIRGEKVFGQIRKIVGEINIEDLRIPYTAVAADLTNQQEIWFQEGCLHQAMRASAAIPSLFTPVMQGNRMLVDGGILNPL
PIVPVVSSHCDLIIAVNLNSTNQRHYKLPVIQRPAAFRTRFDSLISSLGSKMPFRRKQAEQLLLLEQEALRAEAAEINPW
VESAEPEAQQPAAAPERDGAPKSATGSFIVDNVGPASLLDLINQSFEVMQTSLAQYKIAGYPPDILINVPKRVCRFFEFY
KAPELIALGREIARDTLDRYESEQN

Specific function: Unknown

COG id: COG1752

COG function: function code R; Predicted esterase of the alpha-beta hydrolase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 patatin domain [H]

Homologues:

Organism=Homo sapiens, GI260656041, Length=187, Percent_Identity=28.8770053475936, Blast_Score=90, Evalue=4e-18,
Organism=Homo sapiens, GI116256487, Length=187, Percent_Identity=28.8770053475936, Blast_Score=90, Evalue=4e-18,
Organism=Homo sapiens, GI260656039, Length=187, Percent_Identity=28.8770053475936, Blast_Score=90, Evalue=4e-18,
Organism=Homo sapiens, GI260656037, Length=187, Percent_Identity=28.8770053475936, Blast_Score=89, Evalue=4e-18,
Organism=Homo sapiens, GI260656043, Length=187, Percent_Identity=28.8770053475936, Blast_Score=89, Evalue=4e-18,
Organism=Homo sapiens, GI148727335, Length=192, Percent_Identity=29.6875, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI148727290, Length=192, Percent_Identity=29.6875, Blast_Score=82, Evalue=6e-16,
Organism=Escherichia coli, GI226510936, Length=338, Percent_Identity=32.8402366863905, Blast_Score=177, Evalue=7e-46,
Organism=Saccharomyces cerevisiae, GI6323581, Length=189, Percent_Identity=31.2169312169312, Blast_Score=99, Evalue=8e-22,
Organism=Drosophila melanogaster, GI28571388, Length=186, Percent_Identity=28.494623655914, Blast_Score=72, Evalue=6e-13,
Organism=Drosophila melanogaster, GI281376913, Length=186, Percent_Identity=29.0322580645161, Blast_Score=70, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016035
- InterPro:   IPR001423
- InterPro:   IPR002641 [H]

Pfam domain/function: PF01734 Patatin [H]

EC number: NA

Molecular weight: Translated: 38157; Mature: 38157

Theoretical pI: Translated: 5.81; Mature: 5.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKRVALVLGSGGARGYAHIGVIEEIERRGYDISCIAGCSMGAVVGGIYAAGKLDEYRNW
CCCEEEEEEECCCCCCEEHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHCCHHHHHHH
IESLDYLDVLRLVDVSFRLGAIRGEKVFGQIRKIVGEINIEDLRIPYTAVAADLTNQQEI
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEECCHHHHHHHCCCCHHH
WFQEGCLHQAMRASAAIPSLFTPVMQGNRMLVDGGILNPLPIVPVVSSHCDLIIAVNLNS
HHHHHHHHHHHHHHHCCHHHHHHHHCCCEEEEECCCCCCCCCHHHHCCCCCEEEEEECCC
TNQRHYKLPVIQRPAAFRTRFDSLISSLGSKMPFRRKQAEQLLLLEQEALRAEAAEINPW
CCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCH
VESAEPEAQQPAAAPERDGAPKSATGSFIVDNVGPASLLDLINQSFEVMQTSLAQYKIAG
HHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHEEECC
YPPDILINVPKRVCRFFEFYKAPELIALGREIARDTLDRYESEQN
CCCHHEEECHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKKRVALVLGSGGARGYAHIGVIEEIERRGYDISCIAGCSMGAVVGGIYAAGKLDEYRNW
CCCEEEEEEECCCCCCEEHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHCCHHHHHHH
IESLDYLDVLRLVDVSFRLGAIRGEKVFGQIRKIVGEINIEDLRIPYTAVAADLTNQQEI
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEECCHHHHHHHCCCCHHH
WFQEGCLHQAMRASAAIPSLFTPVMQGNRMLVDGGILNPLPIVPVVSSHCDLIIAVNLNS
HHHHHHHHHHHHHHHCCHHHHHHHHCCCEEEEECCCCCCCCCHHHHCCCCCEEEEEECCC
TNQRHYKLPVIQRPAAFRTRFDSLISSLGSKMPFRRKQAEQLLLLEQEALRAEAAEINPW
CCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCH
VESAEPEAQQPAAAPERDGAPKSATGSFIVDNVGPASLLDLINQSFEVMQTSLAQYKIAG
HHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHEEECC
YPPDILINVPKRVCRFFEFYKAPELIALGREIARDTLDRYESEQN
CCCHHEEECHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]