| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is fadH [H]
Identifier: 77460167
GI number: 77460167
Start: 4472988
End: 4473857
Strand: Direct
Name: fadH [H]
Synonym: Pfl01_3946
Alternate gene names: 77460167
Gene position: 4472988-4473857 (Clockwise)
Preceding gene: 77460166
Following gene: 77460168
Centisome position: 69.47
GC content: 63.1
Gene sequence:
>870_bases ATGGCGTTCGAATCGATTTTCAGGGCTGATCTGTTCAGCGGTCAGACCGTCATCGTCACCGGGGGCGGCAGTGGCATCGG GCGTTGCACCGCCCATGAACTGGCGGCGCTGGGGGCCAACGTGGTGCTGGTCGGGCGCAAACCGGAAAAGCTGCAAACCG TCGCCGCCGAAATTGCCGAGGACGGCGGTCGGGCGCACTGGCAGGCCTGCGATATCCGTGACGAAGAAGCGGTGAAGGCG CTGGTCAGCGAACTGATCCGTGAACACGGGCCGATCCACGGACTGGTCAACAATGCCGGCGGGCAGTACCCGTCGCCCCT GGCCTCGATCAATCAGAAAGGCTTCGAAACCGTACTGCGCACCAATCTGGTCGGCGGCTTCCTGATGGCCCGGGAAGTGT TCAATCAATCGATGAGCAAACACGGCGGCAACATCGTCAACATGCTCGCCGACATGTGGGGCGGCATGCCCGGCATGGGC CACTCCGGCGCCGCACGGTCGGGCATGGACAACTTCACCAAAACAGCGGCATTCGAATGGGGTTATGCCGGGGTTCGGGT GAATGCGGTGGCGCCGGGCTGGATCGCGTCCAGCGGCATGGACACCTATGAAGGTGCGTTCAAAGCCGTGATCCCGACCC TGCGCGAACACGTGCCGCTCAAGCGTATCGGCACCGAATCAGAGGTCAGCGCGGCGATCGTGTTTCTGCTCAGCCCGGCT GCCGCGTTCATCAGCGGCAGCACCTTGCGCATCGACGGCGCGGCCAGCCTGGGCAACCGCGCATGGCCGTTGCACAAGGC GACCCACAGCGAATCCTTCAACGGTTTTCACCGGGCCTACATGCCAGACGTTTTGAAGGACAAGGAGTAA
Upstream 100 bases:
>100_bases CATCGACCCGCAAGGCAAGGCTTTCGCCCAGCAATTACTGGAAATCCAGATCCCGGTGCCGCAAAGCATCGCCGAACAGT TCGACTAGAGGATTGGCAGC
Downstream 100 bases:
>100_bases GCCATGCCGCAGATCCAGTCCCAACTCGACCCGCACAGCGAAGCCTTCGCCCGCAATCGCGCAGCGATGCTCGCCGCCAT CGAGCAAGTCCAGCAGCTGG
Product: Short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 289; Mature: 288
Protein sequence:
>289_residues MAFESIFRADLFSGQTVIVTGGGSGIGRCTAHELAALGANVVLVGRKPEKLQTVAAEIAEDGGRAHWQACDIRDEEAVKA LVSELIREHGPIHGLVNNAGGQYPSPLASINQKGFETVLRTNLVGGFLMAREVFNQSMSKHGGNIVNMLADMWGGMPGMG HSGAARSGMDNFTKTAAFEWGYAGVRVNAVAPGWIASSGMDTYEGAFKAVIPTLREHVPLKRIGTESEVSAAIVFLLSPA AAFISGSTLRIDGAASLGNRAWPLHKATHSESFNGFHRAYMPDVLKDKE
Sequences:
>Translated_289_residues MAFESIFRADLFSGQTVIVTGGGSGIGRCTAHELAALGANVVLVGRKPEKLQTVAAEIAEDGGRAHWQACDIRDEEAVKA LVSELIREHGPIHGLVNNAGGQYPSPLASINQKGFETVLRTNLVGGFLMAREVFNQSMSKHGGNIVNMLADMWGGMPGMG HSGAARSGMDNFTKTAAFEWGYAGVRVNAVAPGWIASSGMDTYEGAFKAVIPTLREHVPLKRIGTESEVSAAIVFLLSPA AAFISGSTLRIDGAASLGNRAWPLHKATHSESFNGFHRAYMPDVLKDKE >Mature_288_residues AFESIFRADLFSGQTVIVTGGGSGIGRCTAHELAALGANVVLVGRKPEKLQTVAAEIAEDGGRAHWQACDIRDEEAVKAL VSELIREHGPIHGLVNNAGGQYPSPLASINQKGFETVLRTNLVGGFLMAREVFNQSMSKHGGNIVNMLADMWGGMPGMGH SGAARSGMDNFTKTAAFEWGYAGVRVNAVAPGWIASSGMDTYEGAFKAVIPTLREHVPLKRIGTESEVSAAIVFLLSPAA AFISGSTLRIDGAASLGNRAWPLHKATHSESFNGFHRAYMPDVLKDKE
Specific function: Auxiliary enzyme of beta-oxidation. It participates in the metabolism of unsaturated fatty enoyl-CoA esters having double bonds in both even- and odd-numbered positions. Catalyzes the NADP-dependent reduction of 2,4-dienoyl-CoA to yield trans-3- enoyl-CoA
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family. 2,4-dienoyl-CoA reductase subfamily [H]
Homologues:
Organism=Homo sapiens, GI19923817, Length=261, Percent_Identity=43.2950191570881, Blast_Score=205, Evalue=4e-53, Organism=Homo sapiens, GI10190704, Length=258, Percent_Identity=32.1705426356589, Blast_Score=136, Evalue=2e-32, Organism=Homo sapiens, GI4503301, Length=231, Percent_Identity=30.3030303030303, Blast_Score=107, Evalue=2e-23, Organism=Homo sapiens, GI40254992, Length=247, Percent_Identity=31.5789473684211, Blast_Score=97, Evalue=2e-20, Organism=Homo sapiens, GI32483357, Length=261, Percent_Identity=26.8199233716475, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI59889578, Length=222, Percent_Identity=32.8828828828829, Blast_Score=89, Evalue=7e-18, Organism=Homo sapiens, GI7705925, Length=248, Percent_Identity=30.241935483871, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI5031737, Length=260, Percent_Identity=24.2307692307692, Blast_Score=87, Evalue=3e-17, Organism=Homo sapiens, GI226371731, Length=197, Percent_Identity=26.9035532994924, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI15277342, Length=249, Percent_Identity=27.3092369477912, Blast_Score=79, Evalue=5e-15, Organism=Homo sapiens, GI126723750, Length=259, Percent_Identity=24.7104247104247, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI31542939, Length=201, Percent_Identity=28.8557213930348, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI210032110, Length=195, Percent_Identity=25.6410256410256, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI142976729, Length=193, Percent_Identity=26.4248704663212, Blast_Score=67, Evalue=1e-11, Organism=Escherichia coli, GI1787905, Length=249, Percent_Identity=30.5220883534137, Blast_Score=109, Evalue=2e-25, Organism=Escherichia coli, GI1787335, Length=244, Percent_Identity=29.9180327868852, Blast_Score=103, Evalue=2e-23, Organism=Escherichia coli, GI2367175, Length=243, Percent_Identity=32.5102880658436, Blast_Score=102, Evalue=2e-23, Organism=Escherichia coli, GI87082100, Length=254, Percent_Identity=26.3779527559055, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI87082160, Length=259, Percent_Identity=28.5714285714286, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI1788459, Length=250, Percent_Identity=29.2, Blast_Score=92, Evalue=5e-20, Organism=Escherichia coli, GI1789208, Length=251, Percent_Identity=27.8884462151394, Blast_Score=91, Evalue=9e-20, Organism=Escherichia coli, GI1790717, Length=247, Percent_Identity=25.9109311740891, Blast_Score=89, Evalue=2e-19, Organism=Escherichia coli, GI1786812, Length=259, Percent_Identity=26.2548262548263, Blast_Score=81, Evalue=7e-17, Organism=Escherichia coli, GI1789378, Length=245, Percent_Identity=26.9387755102041, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1789057, Length=261, Percent_Identity=27.9693486590038, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1787820, Length=242, Percent_Identity=27.6859504132231, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1787526, Length=192, Percent_Identity=27.0833333333333, Blast_Score=69, Evalue=5e-13, Organism=Escherichia coli, GI2367365, Length=247, Percent_Identity=26.3157894736842, Blast_Score=67, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17562910, Length=262, Percent_Identity=30.5343511450382, Blast_Score=110, Evalue=9e-25, Organism=Caenorhabditis elegans, GI17536651, Length=254, Percent_Identity=29.9212598425197, Blast_Score=107, Evalue=9e-24, Organism=Caenorhabditis elegans, GI25147288, Length=251, Percent_Identity=30.2788844621514, Blast_Score=107, Evalue=1e-23, Organism=Caenorhabditis elegans, GI17555706, Length=250, Percent_Identity=31.2, Blast_Score=106, Evalue=2e-23, Organism=Caenorhabditis elegans, GI71994600, Length=247, Percent_Identity=31.5789473684211, Blast_Score=105, Evalue=4e-23, Organism=Caenorhabditis elegans, GI17536025, Length=254, Percent_Identity=30.7086614173228, Blast_Score=103, Evalue=8e-23, Organism=Caenorhabditis elegans, GI17562904, Length=262, Percent_Identity=28.6259541984733, Blast_Score=101, Evalue=4e-22, Organism=Caenorhabditis elegans, GI115534694, Length=249, Percent_Identity=30.1204819277108, Blast_Score=100, Evalue=6e-22, Organism=Caenorhabditis elegans, GI17560150, Length=260, Percent_Identity=26.9230769230769, Blast_Score=96, Evalue=1e-20, Organism=Caenorhabditis elegans, GI71994604, Length=246, Percent_Identity=30.8943089430894, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17562908, Length=262, Percent_Identity=27.4809160305344, Blast_Score=96, Evalue=3e-20, Organism=Caenorhabditis elegans, GI17562990, Length=260, Percent_Identity=26.5384615384615, Blast_Score=94, Evalue=9e-20, Organism=Caenorhabditis elegans, GI17531453, Length=264, Percent_Identity=30.3030303030303, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17544670, Length=267, Percent_Identity=28.0898876404494, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI193204405, Length=263, Percent_Identity=28.1368821292776, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17559104, Length=264, Percent_Identity=26.8939393939394, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17562906, Length=263, Percent_Identity=26.615969581749, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI17560220, Length=291, Percent_Identity=27.4914089347079, Blast_Score=91, Evalue=5e-19, Organism=Caenorhabditis elegans, GI17538486, Length=263, Percent_Identity=27.3764258555133, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17538480, Length=263, Percent_Identity=29.277566539924, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17565030, Length=273, Percent_Identity=28.9377289377289, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI17551412, Length=266, Percent_Identity=28.5714285714286, Blast_Score=84, Evalue=9e-17, Organism=Caenorhabditis elegans, GI17560332, Length=263, Percent_Identity=28.1368821292776, Blast_Score=84, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17563726, Length=261, Percent_Identity=26.8199233716475, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI72000259, Length=261, Percent_Identity=27.2030651340996, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17561272, Length=233, Percent_Identity=25.7510729613734, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI71982365, Length=150, Percent_Identity=31.3333333333333, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17560676, Length=248, Percent_Identity=23.7903225806452, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17561402, Length=251, Percent_Identity=26.6932270916335, Blast_Score=69, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17538182, Length=255, Percent_Identity=27.0588235294118, Blast_Score=69, Evalue=4e-12, Organism=Caenorhabditis elegans, GI32565532, Length=135, Percent_Identity=32.5925925925926, Blast_Score=69, Evalue=4e-12, Organism=Caenorhabditis elegans, GI72001364, Length=121, Percent_Identity=33.0578512396694, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17558628, Length=194, Percent_Identity=30.9278350515464, Blast_Score=64, Evalue=1e-10, Organism=Saccharomyces cerevisiae, GI6324126, Length=259, Percent_Identity=30.8880308880309, Blast_Score=129, Evalue=4e-31, Organism=Saccharomyces cerevisiae, GI6322861, Length=290, Percent_Identity=26.2068965517241, Blast_Score=75, Evalue=1e-14, Organism=Drosophila melanogaster, GI21357041, Length=249, Percent_Identity=34.9397590361446, Blast_Score=116, Evalue=2e-26, Organism=Drosophila melanogaster, GI28571526, Length=250, Percent_Identity=34.4, Blast_Score=115, Evalue=4e-26, Organism=Drosophila melanogaster, GI24644339, Length=255, Percent_Identity=32.9411764705882, Blast_Score=111, Evalue=6e-25, Organism=Drosophila melanogaster, GI23397609, Length=251, Percent_Identity=34.2629482071713, Blast_Score=110, Evalue=1e-24, Organism=Drosophila melanogaster, GI24639444, Length=256, Percent_Identity=30.46875, Blast_Score=105, Evalue=5e-23, Organism=Drosophila melanogaster, GI24643142, Length=254, Percent_Identity=30.7086614173228, Blast_Score=102, Evalue=3e-22, Organism=Drosophila melanogaster, GI24644337, Length=250, Percent_Identity=32.4, Blast_Score=91, Evalue=1e-18, Organism=Drosophila melanogaster, GI21355319, Length=244, Percent_Identity=26.6393442622951, Blast_Score=89, Evalue=3e-18, Organism=Drosophila melanogaster, GI24584752, Length=184, Percent_Identity=32.0652173913043, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI161076933, Length=211, Percent_Identity=29.3838862559242, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24584748, Length=211, Percent_Identity=29.3838862559242, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI28574402, Length=195, Percent_Identity=29.2307692307692, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI24584744, Length=195, Percent_Identity=29.2307692307692, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI24640492, Length=204, Percent_Identity=25, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI21357673, Length=193, Percent_Identity=26.4248704663212, Blast_Score=69, Evalue=5e-12, Organism=Drosophila melanogaster, GI21356301, Length=199, Percent_Identity=28.1407035175879, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI24641232, Length=137, Percent_Identity=32.1167883211679, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI161076371, Length=117, Percent_Identity=32.4786324786325, Blast_Score=65, Evalue=7e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.3.1.34 [H]
Molecular weight: Translated: 30677; Mature: 30546
Theoretical pI: Translated: 7.08; Mature: 7.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAFESIFRADLFSGQTVIVTGGGSGIGRCTAHELAALGANVVLVGRKPEKLQTVAAEIAE CCHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH DGGRAHWQACDIRDEEAVKALVSELIREHGPIHGLVNNAGGQYPSPLASINQKGFETVLR CCCCCCEEECCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHH TNLVGGFLMAREVFNQSMSKHGGNIVNMLADMWGGMPGMGHSGAARSGMDNFTKTAAFEW HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCC GYAGVRVNAVAPGWIASSGMDTYEGAFKAVIPTLREHVPLKRIGTESEVSAAIVFLLSPA CCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHH AAFISGSTLRIDGAASLGNRAWPLHKATHSESFNGFHRAYMPDVLKDKE HHHHCCCEEEECCCCCCCCCCCCCCHHHCCCCCCCHHHHHCCHHHCCCC >Mature Secondary Structure AFESIFRADLFSGQTVIVTGGGSGIGRCTAHELAALGANVVLVGRKPEKLQTVAAEIAE CHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH DGGRAHWQACDIRDEEAVKALVSELIREHGPIHGLVNNAGGQYPSPLASINQKGFETVLR CCCCCCEEECCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHH TNLVGGFLMAREVFNQSMSKHGGNIVNMLADMWGGMPGMGHSGAARSGMDNFTKTAAFEW HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCC GYAGVRVNAVAPGWIASSGMDTYEGAFKAVIPTLREHVPLKRIGTESEVSAAIVFLLSPA CCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHH AAFISGSTLRIDGAASLGNRAWPLHKATHSESFNGFHRAYMPDVLKDKE HHHHCCCEEEECCCCCCCCCCCCCCHHHCCCCCCCHHHHHCCHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]