| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
Click here to switch to the map view.
The map label for this gene is tal [H]
Identifier: 77460068
GI number: 77460068
Start: 4349736
End: 4350662
Strand: Direct
Name: tal [H]
Synonym: Pfl01_3847
Alternate gene names: 77460068
Gene position: 4349736-4350662 (Clockwise)
Preceding gene: 77460067
Following gene: 77460072
Centisome position: 67.56
GC content: 62.14
Gene sequence:
>927_bases ATGACTTCCAAGCTGGAACAACTCAAACAATTCACCACCGTCGTGGCCGACACCGGCGACTTCGAAGCGATTGCCCGGGT CAAACCGGTCGACGCCACCACCAACCCCTCCCTGCTGCTCAAGGCAGCGGCGATTCCGGCCTACGCCGAACTGCTGAACG CCAGCGTGCGCGACTGCAAGGGCGATGTCGGCCTGGCCAGCGACCGTTTCGGCGTCGCGGTCGGTCAGGAAATCCTTAAA GTGATCCCGGGCCGCATTTCCACTGAAGTGGATGCGCGCCTGTCGTTCGACCAGGACGCGGTGCTCAAGCGCGCCCATCG CCTGATCGAGCTGTATGACAAGGCCGGCGTTGGCCGTGACCGCGTGCTGATCAAGATCGCCTCGACCTGGGAAGGCATCC GCGCCGCCGAGATCCTCGAGAAGGAAGGCATCCAGACCAACCTGACCCTGCTGTTCTCCTTCGCTCAGGCCGCTGCCTGC GCCGATGCCGGCGTGTTCCTGATCTCGCCGTTCGTGGGTCGCATCTACGACTGGTACAAGAAGGCCAACGGCAACGACTA CACCGGTGCCGACGATCCGGGCGTACAGTCCGTGACGCGCATCTACAACTACTACAAGGCCAATGACTACAAGACCGTGG TCATGGGTGCGAGCTTCCGCAACCTCAGTCAGATCGAGCAACTGGCCGGCTGCGACCGCCTGACCATCAGCCCGGACCTG ATCGAGAAACTGGCGGCCGACACCGGCAAGCTGGAACGCAAACTTGCTCCGGGCCATGCTGGCGAAGCGCGCCTGAGCCT CAACGAAGCGCAATTCCGCTGGTTGTCCAACGAAGACGCGATGGCTACCGAAAAGCTGGCCGAAGGCATTCGTCAGTTTG CCCGCGACCAGGAAAAACTCGAGGCGCTGCTGCAAGCCAAGCTGTAA
Upstream 100 bases:
>100_bases TTCAGGTTGTTGCCACCGGGGCGCTCGATACGCCGACATGCCCTTGAGTGGCTGTCGGCGCTCGGGTAATGTCACCAGAC CCATAGGACAGAGCACGCTC
Downstream 100 bases:
>100_bases TCAGCCGAGCACAAACGCAAAAAGGGCGAACCCTCACAGGTTCGCCCTTTTTTGTGCCTGGCGGATTGATCGATCAATGC CGCTCGAGGGCATTCACCAG
Product: transaldolase B
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 308; Mature: 307
Protein sequence:
>308_residues MTSKLEQLKQFTTVVADTGDFEAIARVKPVDATTNPSLLLKAAAIPAYAELLNASVRDCKGDVGLASDRFGVAVGQEILK VIPGRISTEVDARLSFDQDAVLKRAHRLIELYDKAGVGRDRVLIKIASTWEGIRAAEILEKEGIQTNLTLLFSFAQAAAC ADAGVFLISPFVGRIYDWYKKANGNDYTGADDPGVQSVTRIYNYYKANDYKTVVMGASFRNLSQIEQLAGCDRLTISPDL IEKLAADTGKLERKLAPGHAGEARLSLNEAQFRWLSNEDAMATEKLAEGIRQFARDQEKLEALLQAKL
Sequences:
>Translated_308_residues MTSKLEQLKQFTTVVADTGDFEAIARVKPVDATTNPSLLLKAAAIPAYAELLNASVRDCKGDVGLASDRFGVAVGQEILK VIPGRISTEVDARLSFDQDAVLKRAHRLIELYDKAGVGRDRVLIKIASTWEGIRAAEILEKEGIQTNLTLLFSFAQAAAC ADAGVFLISPFVGRIYDWYKKANGNDYTGADDPGVQSVTRIYNYYKANDYKTVVMGASFRNLSQIEQLAGCDRLTISPDL IEKLAADTGKLERKLAPGHAGEARLSLNEAQFRWLSNEDAMATEKLAEGIRQFARDQEKLEALLQAKL >Mature_307_residues TSKLEQLKQFTTVVADTGDFEAIARVKPVDATTNPSLLLKAAAIPAYAELLNASVRDCKGDVGLASDRFGVAVGQEILKV IPGRISTEVDARLSFDQDAVLKRAHRLIELYDKAGVGRDRVLIKIASTWEGIRAAEILEKEGIQTNLTLLFSFAQAAACA DAGVFLISPFVGRIYDWYKKANGNDYTGADDPGVQSVTRIYNYYKANDYKTVVMGASFRNLSQIEQLAGCDRLTISPDLI EKLAADTGKLERKLAPGHAGEARLSLNEAQFRWLSNEDAMATEKLAEGIRQFARDQEKLEALLQAKL
Specific function: Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway [H]
COG id: COG0176
COG function: function code G; Transaldolase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transaldolase family. Type 1 subfamily [H]
Homologues:
Organism=Homo sapiens, GI5803187, Length=320, Percent_Identity=57.8125, Blast_Score=354, Evalue=7e-98, Organism=Escherichia coli, GI1786189, Length=313, Percent_Identity=58.7859424920128, Blast_Score=363, Evalue=1e-102, Organism=Escherichia coli, GI1788807, Length=315, Percent_Identity=57.1428571428571, Blast_Score=353, Evalue=6e-99, Organism=Caenorhabditis elegans, GI25153750, Length=318, Percent_Identity=57.5471698113208, Blast_Score=345, Evalue=2e-95, Organism=Caenorhabditis elegans, GI25153752, Length=165, Percent_Identity=58.7878787878788, Blast_Score=192, Evalue=1e-49, Organism=Caenorhabditis elegans, GI17570473, Length=97, Percent_Identity=52.5773195876289, Blast_Score=98, Evalue=7e-21, Organism=Saccharomyces cerevisiae, GI6321480, Length=321, Percent_Identity=53.5825545171339, Blast_Score=319, Evalue=3e-88, Organism=Saccharomyces cerevisiae, GI6323386, Length=318, Percent_Identity=55.6603773584906, Blast_Score=307, Evalue=1e-84, Organism=Drosophila melanogaster, GI45549185, Length=318, Percent_Identity=55.6603773584906, Blast_Score=340, Evalue=8e-94,
Paralogues:
None
Copy number: 380 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 60 Molecules/Cell In: Stationary Phase,
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR001585 - InterPro: IPR004730 - InterPro: IPR018225 [H]
Pfam domain/function: PF00923 Transaldolase [H]
EC number: =2.2.1.2 [H]
Molecular weight: Translated: 33746; Mature: 33615
Theoretical pI: Translated: 5.54; Mature: 5.54
Prosite motif: PS01054 TRANSALDOLASE_1 ; PS00958 TRANSALDOLASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSKLEQLKQFTTVVADTGDFEAIARVKPVDATTNPSLLLKAAAIPAYAELLNASVRDCK CCHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC GDVGLASDRFGVAVGQEILKVIPGRISTEVDARLSFDQDAVLKRAHRLIELYDKAGVGRD CCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCC RVLIKIASTWEGIRAAEILEKEGIQTNLTLLFSFAQAAACADAGVFLISPFVGRIYDWYK EEEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH KANGNDYTGADDPGVQSVTRIYNYYKANDYKTVVMGASFRNLSQIEQLAGCDRLTISPDL HCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCCEECCHHH IEKLAADTGKLERKLAPGHAGEARLSLNEAQFRWLSNEDAMATEKLAEGIRQFARDQEKL HHHHHHCHHHHHHHCCCCCCCCCEEEECHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHH EALLQAKL HHHHHHCC >Mature Secondary Structure TSKLEQLKQFTTVVADTGDFEAIARVKPVDATTNPSLLLKAAAIPAYAELLNASVRDCK CHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC GDVGLASDRFGVAVGQEILKVIPGRISTEVDARLSFDQDAVLKRAHRLIELYDKAGVGRD CCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCC RVLIKIASTWEGIRAAEILEKEGIQTNLTLLFSFAQAAACADAGVFLISPFVGRIYDWYK EEEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH KANGNDYTGADDPGVQSVTRIYNYYKANDYKTVVMGASFRNLSQIEQLAGCDRLTISPDL HCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCCEECCHHH IEKLAADTGKLERKLAPGHAGEARLSLNEAQFRWLSNEDAMATEKLAEGIRQFARDQEKL HHHHHHCHHHHHHHCCCCCCCCCEEEECHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHH EALLQAKL HHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA