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The map label for this gene is rarA [H]

Identifier: 77459806

GI number: 77459806

Start: 4049464

End: 4050789

Strand: Reverse

Name: rarA [H]

Synonym: Pfl01_3584

Alternate gene names: 77459806

Gene position: 4050789-4049464 (Counterclockwise)

Preceding gene: 77459807

Following gene: 77459805

Centisome position: 62.92

GC content: 61.54

Gene sequence:

>1326_bases
GTGATGGATCTGTTTCGCAGTGCACCGATTGCCCAGCCACTGGCTGCCCGTTTGCGGGCGACCAATCTGGATGAGTACGT
CGGCCAGGAACACGTGCTCGCTCGCGGCAAGCCTCTGCGTGAAGCGCTGGAGCAGGGTGCCCTGCATTCGATGATCTTCT
GGGGCCCGCCGGGCGTGGGCAAGACCACGTTGGCGCGGTTGCTGGCAGAAGTCTCGGATGCGCACTTCGAAACGGTTTCG
GCGGTGCTGGCCGGGGTCAAGGAGATCCGTCAGGCGGTGGAAATCGCCAAGCAGCAGGCCGGCCAGTACGGCAAGCGCAC
GATCCTGTTTGTCGATGAAGTGCACCGCTTCAACAAGTCTCAACAGGACGCCTTCCTGCCGTACGTTGAAGACGGCACGC
TGATCTTCATTGGCGCCACCACTGAAAACCCTTCGTTCGAACTGAACAATGCATTGCTGTCGCGAGCGCGGGTCTACGTA
CTCAAAAGCCTCGACGAGGCAGCGTTGCGCAAGTTGGTGCACCGCGCGCTGACTGAAGAGCGTGGCCTGGGCAAACGTCA
TCTGACCCTCAGCGATGAAGGCTTCCAGATGCTGCTGTCCGCCGCCGATGGCGATGGCCGGCGCCTGCTGAATCTGCTGG
AGAACGCCTCGGACCTCGCCGAAGACAACAGTGAGATGGGCACCGAGCTGCTGCAAAGCCTGCTCGGAGACACTCGCCGG
CGTTTCGACAAGGGCGGCGAAGCGTTCTACGACCAGATTTCCGCGCTGCACAAATCGGTTCGCGGCTCGAATCCTGACGG
CGCGCTGTACTGGTTTGCGCGAATGATCGACGGCGGCTGCGATCCGCTGTACCTCGCCCGGCGGGTGGTGCGGATGGCCA
GCGAAGACATTGGCAACGCCGATCCTCGCGCCCTGAGCCTGTGCCTGGCCGCGTGGGAAGTGCAGGAACGTCTAGGCAGC
CCGGAAGGTGAGTTGGCAGTGGCGCAGGCCATCACTTATCTGGCCTGTGCGCCGAAAAGCAACGCGGTGTACATGGGTTT
CAAGACCGCACTGCGCGCTGCCGCCGAACACGGTTCGCTGGAAGTGCCGCTACATCTGCGCAATGCGCCGACCAAATTGA
TGAAGCAATTGGGTTATGGCGACGAATACCGTTACGCCCACGACGAACCGGACGCCTACGCGGCTGGCGAAGACTATTTC
CCGGAAGAGCTCGACCCGATTCCGTTCTACCAACCGGTGCCCCGTGGCCTGGAATTGAAGATCGGCGAAAAGCTCAACCA
CCTCGCCCAACTTGATCGTTTAAGCCCTCGGCAGCGGAGAAAATAG

Upstream 100 bases:

>100_bases
TGTGAAGGCCAACGAAGCGGTCCCGGCCTCGAAGTTCAAGTTCGACATCCCCAAGGGTGCCGATGTGATCCAGGAATAAA
CACAGAGGTTTCAACGGTAC

Downstream 100 bases:

>100_bases
TGGTTCCATTGATTGTTGCGGTCTCCGTCGGCGGGATTGCTGGCACTTTGTTGCGCTTCGCCACCGGTAATTGGGTGAAC
GCCAATTGGCCGCGGCACTT

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 441; Mature: 441

Protein sequence:

>441_residues
MMDLFRSAPIAQPLAARLRATNLDEYVGQEHVLARGKPLREALEQGALHSMIFWGPPGVGKTTLARLLAEVSDAHFETVS
AVLAGVKEIRQAVEIAKQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNALLSRARVYV
LKSLDEAALRKLVHRALTEERGLGKRHLTLSDEGFQMLLSAADGDGRRLLNLLENASDLAEDNSEMGTELLQSLLGDTRR
RFDKGGEAFYDQISALHKSVRGSNPDGALYWFARMIDGGCDPLYLARRVVRMASEDIGNADPRALSLCLAAWEVQERLGS
PEGELAVAQAITYLACAPKSNAVYMGFKTALRAAAEHGSLEVPLHLRNAPTKLMKQLGYGDEYRYAHDEPDAYAAGEDYF
PEELDPIPFYQPVPRGLELKIGEKLNHLAQLDRLSPRQRRK

Sequences:

>Translated_441_residues
MMDLFRSAPIAQPLAARLRATNLDEYVGQEHVLARGKPLREALEQGALHSMIFWGPPGVGKTTLARLLAEVSDAHFETVS
AVLAGVKEIRQAVEIAKQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNALLSRARVYV
LKSLDEAALRKLVHRALTEERGLGKRHLTLSDEGFQMLLSAADGDGRRLLNLLENASDLAEDNSEMGTELLQSLLGDTRR
RFDKGGEAFYDQISALHKSVRGSNPDGALYWFARMIDGGCDPLYLARRVVRMASEDIGNADPRALSLCLAAWEVQERLGS
PEGELAVAQAITYLACAPKSNAVYMGFKTALRAAAEHGSLEVPLHLRNAPTKLMKQLGYGDEYRYAHDEPDAYAAGEDYF
PEELDPIPFYQPVPRGLELKIGEKLNHLAQLDRLSPRQRRK
>Mature_441_residues
MMDLFRSAPIAQPLAARLRATNLDEYVGQEHVLARGKPLREALEQGALHSMIFWGPPGVGKTTLARLLAEVSDAHFETVS
AVLAGVKEIRQAVEIAKQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNALLSRARVYV
LKSLDEAALRKLVHRALTEERGLGKRHLTLSDEGFQMLLSAADGDGRRLLNLLENASDLAEDNSEMGTELLQSLLGDTRR
RFDKGGEAFYDQISALHKSVRGSNPDGALYWFARMIDGGCDPLYLARRVVRMASEDIGNADPRALSLCLAAWEVQERLGS
PEGELAVAQAITYLACAPKSNAVYMGFKTALRAAAEHGSLEVPLHLRNAPTKLMKQLGYGDEYRYAHDEPDAYAAGEDYF
PEELDPIPFYQPVPRGLELKIGEKLNHLAQLDRLSPRQRRK

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=441, Percent_Identity=41.0430839002268, Blast_Score=311, Evalue=9e-85,
Organism=Homo sapiens, GI18426904, Length=441, Percent_Identity=36.9614512471655, Blast_Score=257, Evalue=2e-68,
Organism=Escherichia coli, GI1787119, Length=433, Percent_Identity=60.2771362586605, Blast_Score=517, Evalue=1e-148,
Organism=Saccharomyces cerevisiae, GI6324111, Length=426, Percent_Identity=41.3145539906103, Blast_Score=307, Evalue=2e-84,
Organism=Saccharomyces cerevisiae, GI6324039, Length=238, Percent_Identity=23.9495798319328, Blast_Score=69, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 48926; Mature: 48926

Theoretical pI: Translated: 6.16; Mature: 6.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMDLFRSAPIAQPLAARLRATNLDEYVGQEHVLARGKPLREALEQGALHSMIFWGPPGVG
CCCCHHCCCCHHHHHHHHHHCCCHHHHCCHHHHHCCCHHHHHHHCCCHHCEEEECCCCCC
KTTLARLLAEVSDAHFETVSAVLAGVKEIRQAVEIAKQQAGQYGKRTILFVDEVHRFNKS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHCCCC
QQDAFLPYVEDGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVHRALTEE
CCCCCCCEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RGLGKRHLTLSDEGFQMLLSAADGDGRRLLNLLENASDLAEDNSEMGTELLQSLLGDTRR
HCCCCEEEEECCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
RFDKGGEAFYDQISALHKSVRGSNPDGALYWFARMIDGGCDPLYLARRVVRMASEDIGNA
HHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCC
DPRALSLCLAAWEVQERLGSPEGELAVAQAITYLACAPKSNAVYMGFKTALRAAAEHGSL
CHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHCCCE
EVPLHLRNAPTKLMKQLGYGDEYRYAHDEPDAYAAGEDYFPEELDPIPFYQPVPRGLELK
EEEEEECCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
IGEKLNHLAQLDRLSPRQRRK
HHHHHHHHHHHHHCCCHHCCC
>Mature Secondary Structure
MMDLFRSAPIAQPLAARLRATNLDEYVGQEHVLARGKPLREALEQGALHSMIFWGPPGVG
CCCCHHCCCCHHHHHHHHHHCCCHHHHCCHHHHHCCCHHHHHHHCCCHHCEEEECCCCCC
KTTLARLLAEVSDAHFETVSAVLAGVKEIRQAVEIAKQQAGQYGKRTILFVDEVHRFNKS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHCCCC
QQDAFLPYVEDGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVHRALTEE
CCCCCCCEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RGLGKRHLTLSDEGFQMLLSAADGDGRRLLNLLENASDLAEDNSEMGTELLQSLLGDTRR
HCCCCEEEEECCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
RFDKGGEAFYDQISALHKSVRGSNPDGALYWFARMIDGGCDPLYLARRVVRMASEDIGNA
HHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCC
DPRALSLCLAAWEVQERLGSPEGELAVAQAITYLACAPKSNAVYMGFKTALRAAAEHGSL
CHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHCCCE
EVPLHLRNAPTKLMKQLGYGDEYRYAHDEPDAYAAGEDYFPEELDPIPFYQPVPRGLELK
EEEEEECCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
IGEKLNHLAQLDRLSPRQRRK
HHHHHHHHHHHHHCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]