Click here to switch to the map view.

The map label for this gene is ygiK [H]

Identifier: 77459678

GI number: 77459678

Start: 3940945

End: 3942225

Strand: Direct

Name: ygiK [H]

Synonym: Pfl01_3456

Alternate gene names: 77459678

Gene position: 3940945-3942225 (Clockwise)

Preceding gene: 77459677

Following gene: 77459682

Centisome position: 61.21

GC content: 61.36

Gene sequence:

>1281_bases
ATGGACGCATTGATTCTGCTGGGCAGTTTTATCGCACTGATCCTGATCGGCATGCCGGTTGCCTACGCCCTCGGGCTGTC
AGCCCTGATTGGCGCGTGGTGGATCGACATCCCGTTCCAGGCCTTGATGATTCAGGTGGCGGGCGGGGTGAACAAATTCT
CGCTGCTGGCGATTCCGTTCTTCGTGCTGGCCGGCGCGATCATGGCCGAGGGCGGCATGTCGCGACGGCTGGTGGCGTTC
GCCGGGGTCCTGGTGGGCTTTGTGCGTGGCGGGCTGTCGCTGGTCAACATCATGGCCTCGACCTTTTTCGGCGCGATTTC
CGGCTCGTCGGTGGCCGACACCGCATCGGTGGGTTCGGTGCTGATCCCGGAAATGGAGCGCAAGGGCTACCCTCGGGAAT
TCTCCACAGCGGTCACCGTCAGCGGTTCGGTACAAGCCCTGCTGACCCCGCCGAGTCACAACTCGGTGCTCTACTCGCTG
GCGGCCGGCGGCACCGTTTCCATTGCGTCGCTGTTCATGGCCGGCGTGGTGCCGGGCCTGCTGATGAGCGCGTGCCTGAT
GGTGTTGTGTCTGATTTTTGCGCGCAAACGCGACTACCCCAAGGGCGAAGTGATCCCGCTGCGCGAAGCCCTGAAGATCT
GCGGCGAAGCCTTGTGGGGCCTGATGGCGATGGTGATCATTCTCGGCGGGATTCTTTCGGGGATCTTCACGGCCACCGAG
TCGGCGGCCATCGCCGTGCTGTGGTCGTTTTTCGTCACCATGTTCATCTACCGCGACTACAAATGGAGTGAGCTGCCGAA
ACTGATGCATCGCACAGTGCGCACCATTTCCATCGTGATGATCCTGATCGGCTTCGCCGCCAGCTTCGGCTACATCATGA
CCCTGATGCAGATCCCGGCGAAGATCACCACGCTGTTCCTGACCCTGTCCGACAACCGCTACGTGATCCTGATGTGCATC
AACGTCATGCTGCTGTTGCTCGGCACCGTAATGGACATGGCACCGCTGATCCTGATCCTCACACCGATCCTGATGCCGGT
GATTCTCGGTATCGGCGTCGACCCGGTGCAGTTCGGCATGATCATGCTGGTCAACCTCGGTATCGGCCTGATAACGCCGC
CCGTGGGCGCCGTGCTGTTCGTGGGTTCGGCGGTGGGCAAGGTCAGTATCGAAAGCACGGTGAAGGCGCTGCTGCCGTTC
TACGCCGTGCTGTTCCTGGTGCTGATGCTGGTGACCTACGTTCCGGCGCTGTCGCTTTGGTTGCCGCATCTGGTGTTGTA
A

Upstream 100 bases:

>100_bases
TGACGCTGGTTTTCGTACTGGAAAAACTCTTGCTCGGCGATCAAAGCAATCGCCGCGTGGTGCGATTCGACCTGGTTGAA
GAAAACGAAGGGGCTGCCTG

Downstream 100 bases:

>100_bases
CGCGATCACTGTGGCGAGGGGGCCTGCTCCCTCGCCACAGACTTCATATCAAGCCCGCAGCAACATGTAAGCCGCAACCA
CCAGGCACACACTGGCAAAC

Product: TRAP dicarboxylate transporter subunit DctM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 426; Mature: 426

Protein sequence:

>426_residues
MDALILLGSFIALILIGMPVAYALGLSALIGAWWIDIPFQALMIQVAGGVNKFSLLAIPFFVLAGAIMAEGGMSRRLVAF
AGVLVGFVRGGLSLVNIMASTFFGAISGSSVADTASVGSVLIPEMERKGYPREFSTAVTVSGSVQALLTPPSHNSVLYSL
AAGGTVSIASLFMAGVVPGLLMSACLMVLCLIFARKRDYPKGEVIPLREALKICGEALWGLMAMVIILGGILSGIFTATE
SAAIAVLWSFFVTMFIYRDYKWSELPKLMHRTVRTISIVMILIGFAASFGYIMTLMQIPAKITTLFLTLSDNRYVILMCI
NVMLLLLGTVMDMAPLILILTPILMPVILGIGVDPVQFGMIMLVNLGIGLITPPVGAVLFVGSAVGKVSIESTVKALLPF
YAVLFLVLMLVTYVPALSLWLPHLVL

Sequences:

>Translated_426_residues
MDALILLGSFIALILIGMPVAYALGLSALIGAWWIDIPFQALMIQVAGGVNKFSLLAIPFFVLAGAIMAEGGMSRRLVAF
AGVLVGFVRGGLSLVNIMASTFFGAISGSSVADTASVGSVLIPEMERKGYPREFSTAVTVSGSVQALLTPPSHNSVLYSL
AAGGTVSIASLFMAGVVPGLLMSACLMVLCLIFARKRDYPKGEVIPLREALKICGEALWGLMAMVIILGGILSGIFTATE
SAAIAVLWSFFVTMFIYRDYKWSELPKLMHRTVRTISIVMILIGFAASFGYIMTLMQIPAKITTLFLTLSDNRYVILMCI
NVMLLLLGTVMDMAPLILILTPILMPVILGIGVDPVQFGMIMLVNLGIGLITPPVGAVLFVGSAVGKVSIESTVKALLPF
YAVLFLVLMLVTYVPALSLWLPHLVL
>Mature_426_residues
MDALILLGSFIALILIGMPVAYALGLSALIGAWWIDIPFQALMIQVAGGVNKFSLLAIPFFVLAGAIMAEGGMSRRLVAF
AGVLVGFVRGGLSLVNIMASTFFGAISGSSVADTASVGSVLIPEMERKGYPREFSTAVTVSGSVQALLTPPSHNSVLYSL
AAGGTVSIASLFMAGVVPGLLMSACLMVLCLIFARKRDYPKGEVIPLREALKICGEALWGLMAMVIILGGILSGIFTATE
SAAIAVLWSFFVTMFIYRDYKWSELPKLMHRTVRTISIVMILIGFAASFGYIMTLMQIPAKITTLFLTLSDNRYVILMCI
NVMLLLLGTVMDMAPLILILTPILMPVILGIGVDPVQFGMIMLVNLGIGLITPPVGAVLFVGSAVGKVSIESTVKALLPF
YAVLFLVLMLVTYVPALSLWLPHLVL

Specific function: Unknown

COG id: COG1593

COG function: function code G; TRAP-type C4-dicarboxylate transport system, large permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yiaN/ygiK family [H]

Homologues:

Organism=Escherichia coli, GI48994950, Length=418, Percent_Identity=37.799043062201, Blast_Score=242, Evalue=4e-65,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010656
- InterPro:   IPR004681 [H]

Pfam domain/function: PF06808 DctM [H]

EC number: NA

Molecular weight: Translated: 45391; Mature: 45391

Theoretical pI: Translated: 8.84; Mature: 8.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
5.9 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
5.9 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDALILLGSFIALILIGMPVAYALGLSALIGAWWIDIPFQALMIQVAGGVNKFSLLAIPF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHH
FVLAGAIMAEGGMSRRLVAFAGVLVGFVRGGLSLVNIMASTFFGAISGSSVADTASVGSV
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCH
LIPEMERKGYPREFSTAVTVSGSVQALLTPPSHNSVLYSLAAGGTVSIASLFMAGVVPGL
HCCCHHCCCCCCCCCCEEEECCCCEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHHHH
LMSACLMVLCLIFARKRDYPKGEVIPLREALKICGEALWGLMAMVIILGGILSGIFTATE
HHHHHHHHHHHHHHHCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SAAIAVLWSFFVTMFIYRDYKWSELPKLMHRTVRTISIVMILIGFAASFGYIMTLMQIPA
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KITTLFLTLSDNRYVILMCINVMLLLLGTVMDMAPLILILTPILMPVILGIGVDPVQFGM
HHHEEEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
IMLVNLGIGLITPPVGAVLFVGSAVGKVSIESTVKALLPFYAVLFLVLMLVTYVPALSLW
HHHHHHCCHHCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LPHLVL
HHHHCC
>Mature Secondary Structure
MDALILLGSFIALILIGMPVAYALGLSALIGAWWIDIPFQALMIQVAGGVNKFSLLAIPF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHH
FVLAGAIMAEGGMSRRLVAFAGVLVGFVRGGLSLVNIMASTFFGAISGSSVADTASVGSV
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCH
LIPEMERKGYPREFSTAVTVSGSVQALLTPPSHNSVLYSLAAGGTVSIASLFMAGVVPGL
HCCCHHCCCCCCCCCCEEEECCCCEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHHHH
LMSACLMVLCLIFARKRDYPKGEVIPLREALKICGEALWGLMAMVIILGGILSGIFTATE
HHHHHHHHHHHHHHHCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SAAIAVLWSFFVTMFIYRDYKWSELPKLMHRTVRTISIVMILIGFAASFGYIMTLMQIPA
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KITTLFLTLSDNRYVILMCINVMLLLLGTVMDMAPLILILTPILMPVILGIGVDPVQFGM
HHHEEEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
IMLVNLGIGLITPPVGAVLFVGSAVGKVSIESTVKALLPFYAVLFLVLMLVTYVPALSLW
HHHHHHCCHHCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LPHLVL
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11677609 [H]