| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is 77459675
Identifier: 77459675
GI number: 77459675
Start: 3938416
End: 3939309
Strand: Direct
Name: 77459675
Synonym: Pfl01_3453
Alternate gene names: NA
Gene position: 3938416-3939309 (Clockwise)
Preceding gene: 77459674
Following gene: 77459676
Centisome position: 61.17
GC content: 64.54
Gene sequence:
>894_bases ATGCAAGCCGAATTGATCGTCGACGCCCGCAACGCGGTGGGTGAAAGCCCGGTGTGGGTGCCGCAGGAAAATGCGCTCTA CTGGGTCGATATCCCCAACGGTGGCCTGCAACGCTGGGATGCCGACACTGGCCATGTTCACGCCTGGAAGGCTCCCGAGA TGCTCGCCTGCCTCGCCCGACACAGCCGGGGCGGCTGGGTGGCCGGTATGGAGAGCGGGTTCTTTCAACTGCGCCCCCAC AGCGATGGCAGCCTTGACAGCGACCTGCTCGCGACCGTGGAACACAGCCGCCAGGACATGCGCCTGAACGACGGCCGCTG CGACCGTCAGGGCCGGTTCTGGGCCGGCAGCATGGTGCTGAACATGGGCCTGAATCTGCCCGAAGGCCGGCTCTATCGCT ACGCCGCCGGGCAAACAGGCGCGATCGAGGCACAGCTTGATGGCTTCATCGTGCCCAACGGTCTGGGCTTCAGTCCGGAC GGCAAAACCATGTACCTGTCGGACTCGCACCCGAACGTGCAACTGATCTGGGCCTTCGATTACGACATTGCCAGCGGCAC CCCCTCCAACCGACGGGTGTTCGTGGACATGAACCATTTTTACGGCCGTCCCGACGGCGCTGCCGTGGATGCCGATGGCT GCTACTGGATCTGCGCCAACGATGTCGGCCTGATCCACCGGTTCACCCCGGAAGGTCGCCTTGACCGCTCGCTGCCGGTA CCGGTGAAAAAACCCACCATGTGCGCCTTCGGTGGCAGCCGGATGGACACCTTGTTCGTGACCTCGATCCGCCCCGCCGA CGACCAGGACCCGCATTCGCTGGCCGGCGGCGTGTTCGCCCTCAACCCCGGCATAAAAGGCCTGCCGGAGCCATTGTTCG ACGACCTGCTGTAA
Upstream 100 bases:
>100_bases ACCCGGCGCGGATCTATCAGGGCGGGGCCTTCGTTGCGGCCGGCCCGTTCGGCGATTGACCGGCGCGATTCACGTCTCCA ATAAAACCAAGGGAATGAGT
Downstream 100 bases:
>100_bases CCCCCTGCTGCATCGCTGTGCCTTGAACACAAAAATAACAAGACTGGAGAACCCCTCATGGACTTCAAACGCACGTTGCT CGCCGCCGCTCTCCCCCTCG
Product: gluconolactonase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 297; Mature: 297
Protein sequence:
>297_residues MQAELIVDARNAVGESPVWVPQENALYWVDIPNGGLQRWDADTGHVHAWKAPEMLACLARHSRGGWVAGMESGFFQLRPH SDGSLDSDLLATVEHSRQDMRLNDGRCDRQGRFWAGSMVLNMGLNLPEGRLYRYAAGQTGAIEAQLDGFIVPNGLGFSPD GKTMYLSDSHPNVQLIWAFDYDIASGTPSNRRVFVDMNHFYGRPDGAAVDADGCYWICANDVGLIHRFTPEGRLDRSLPV PVKKPTMCAFGGSRMDTLFVTSIRPADDQDPHSLAGGVFALNPGIKGLPEPLFDDLL
Sequences:
>Translated_297_residues MQAELIVDARNAVGESPVWVPQENALYWVDIPNGGLQRWDADTGHVHAWKAPEMLACLARHSRGGWVAGMESGFFQLRPH SDGSLDSDLLATVEHSRQDMRLNDGRCDRQGRFWAGSMVLNMGLNLPEGRLYRYAAGQTGAIEAQLDGFIVPNGLGFSPD GKTMYLSDSHPNVQLIWAFDYDIASGTPSNRRVFVDMNHFYGRPDGAAVDADGCYWICANDVGLIHRFTPEGRLDRSLPV PVKKPTMCAFGGSRMDTLFVTSIRPADDQDPHSLAGGVFALNPGIKGLPEPLFDDLL >Mature_297_residues MQAELIVDARNAVGESPVWVPQENALYWVDIPNGGLQRWDADTGHVHAWKAPEMLACLARHSRGGWVAGMESGFFQLRPH SDGSLDSDLLATVEHSRQDMRLNDGRCDRQGRFWAGSMVLNMGLNLPEGRLYRYAAGQTGAIEAQLDGFIVPNGLGFSPD GKTMYLSDSHPNVQLIWAFDYDIASGTPSNRRVFVDMNHFYGRPDGAAVDADGCYWICANDVGLIHRFTPEGRLDRSLPV PVKKPTMCAFGGSRMDTLFVTSIRPADDQDPHSLAGGVFALNPGIKGLPEPLFDDLL
Specific function: Unknown
COG id: COG3386
COG function: function code G; Gluconolactonase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the SMP-30/CGR1 family [H]
Homologues:
Organism=Homo sapiens, GI23111021, Length=298, Percent_Identity=32.2147651006711, Blast_Score=143, Evalue=2e-34, Organism=Homo sapiens, GI4759036, Length=298, Percent_Identity=32.2147651006711, Blast_Score=143, Evalue=2e-34, Organism=Drosophila melanogaster, GI24646912, Length=294, Percent_Identity=27.5510204081633, Blast_Score=110, Evalue=2e-24, Organism=Drosophila melanogaster, GI24646910, Length=294, Percent_Identity=27.5510204081633, Blast_Score=110, Evalue=2e-24, Organism=Drosophila melanogaster, GI24641471, Length=301, Percent_Identity=26.578073089701, Blast_Score=98, Evalue=7e-21, Organism=Drosophila melanogaster, GI18860103, Length=301, Percent_Identity=26.578073089701, Blast_Score=98, Evalue=7e-21, Organism=Drosophila melanogaster, GI24641469, Length=301, Percent_Identity=26.578073089701, Blast_Score=98, Evalue=7e-21, Organism=Drosophila melanogaster, GI45551448, Length=301, Percent_Identity=26.578073089701, Blast_Score=98, Evalue=9e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011042 - InterPro: IPR013658 - InterPro: IPR005511 [H]
Pfam domain/function: PF08450 SGL [H]
EC number: NA
Molecular weight: Translated: 32629; Mature: 32629
Theoretical pI: Translated: 4.98; Mature: 4.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQAELIVDARNAVGESPVWVPQENALYWVDIPNGGLQRWDADTGHVHAWKAPEMLACLAR CCCEEEEECHHHCCCCCCEEECCCCEEEEECCCCCCCCCCCCCCCEEEECCHHHHHHHHH HSRGGWVAGMESGFFQLRPHSDGSLDSDLLATVEHSRQDMRLNDGRCDRQGRFWAGSMVL CCCCCEEEECCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEECEEEE NMGLNLPEGRLYRYAAGQTGAIEAQLDGFIVPNGLGFSPDGKTMYLSDSHPNVQLIWAFD ECCCCCCCCCEEEEECCCCCEEEEEECCEEECCCCCCCCCCCEEEEECCCCCEEEEEEEE YDIASGTPSNRRVFVDMNHFYGRPDGAAVDADGCYWICANDVGLIHRFTPEGRLDRSLPV CCCCCCCCCCCEEEEECHHHCCCCCCCEEECCCEEEEEECCCEEEEEECCCCCCCCCCCC PVKKPTMCAFGGSRMDTLFVTSIRPADDQDPHSLAGGVFALNPGIKGLPEPLFDDLL CCCCCCEEEECCCCCEEEEEEEECCCCCCCCHHHCCCEEEECCCCCCCCCHHHHHCC >Mature Secondary Structure MQAELIVDARNAVGESPVWVPQENALYWVDIPNGGLQRWDADTGHVHAWKAPEMLACLAR CCCEEEEECHHHCCCCCCEEECCCCEEEEECCCCCCCCCCCCCCCEEEECCHHHHHHHHH HSRGGWVAGMESGFFQLRPHSDGSLDSDLLATVEHSRQDMRLNDGRCDRQGRFWAGSMVL CCCCCEEEECCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEECEEEE NMGLNLPEGRLYRYAAGQTGAIEAQLDGFIVPNGLGFSPDGKTMYLSDSHPNVQLIWAFD ECCCCCCCCCEEEEECCCCCEEEEEECCEEECCCCCCCCCCCEEEEECCCCCEEEEEEEE YDIASGTPSNRRVFVDMNHFYGRPDGAAVDADGCYWICANDVGLIHRFTPEGRLDRSLPV CCCCCCCCCCCEEEEECHHHCCCCCCCEEECCCEEEEEECCCEEEEEECCCCCCCCCCCC PVKKPTMCAFGGSRMDTLFVTSIRPADDQDPHSLAGGVFALNPGIKGLPEPLFDDLL CCCCCCEEEECCCCCEEEEEEEECCCCCCCCHHHCCCEEEECCCCCCCCCHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA