Click here to switch to the map view.

The map label for this gene is yadS [H]

Identifier: 77459642

GI number: 77459642

Start: 3900875

End: 3901477

Strand: Reverse

Name: yadS [H]

Synonym: Pfl01_3420

Alternate gene names: 77459642

Gene position: 3901477-3900875 (Counterclockwise)

Preceding gene: 77459643

Following gene: 77459639

Centisome position: 60.6

GC content: 65.01

Gene sequence:

>603_bases
GTGCTGGTGGCCGATCTGGTCGGTACGGCGGTGTTTGCGGTTGAAGGCGCGATTGCGGCGATGCGCAGTCAGCTCGATCT
GCTCGGGGTGATGGTGATTGCCTTCATCGTTGCGCTCGGTGGCGGGGTGACCCGTGATCTGTTGATCGGTGCGACGCCGC
CCAAGGCTGTGGCGGACTGGCGTTATCCGGCGCTGGCGTTTGCCATGGGCGGGGTGGCGTTTGTTTTTCATGAGCAGGTG
CTGGGTTGGTCCGGTTCGACGCTGATCGTGCTGGATGCGGCGGGGCTGGCGCTGTTTGCCGTGGCCGGGGCGCAGAAGGC
GTTGAATTTCGGGATCTCGCCGTTTGTGTCCATGCTGATGGGCACGATTACCGGGGTCGGTGGCGGGGTGCTGCGGGACA
TTGTGCTGGCGCGGGTGCCGGTGGTGTTGCAGGCGGATTTGTATGCCAGTTCGGCGTTTGTTGGCGCGGCGGTGTTGATC
GTCGGGCGCAGGCTGGGTGTGCCGCCGGTGGCGGCTGCGTTGCTGGCGGGGGCGGCGTGTTTGTTGCTGCGGTTGTTGTC
GGTGCATTTCGGCTGGCAGTTGCCGAAGGTTCTGGAGGCATGA

Upstream 100 bases:

>100_bases
GTGATGCGTATGCCGACGGGCAAGTGACTCGACACATCACCAAGACCCGTTGCGTCACTCAATAAGCCGGGCGCCTGCGA
AGGCGCGGGTCGAGGGGATT

Downstream 100 bases:

>100_bases
AAAAGGCAGCCCCTGCGCTGCCTTTTCGTTTGCGTCAGAAGCGGATCAGGACAGGAAACCGCCGTCCACGTTCAGCGATA
CGCCGGTGGTGTAGCTCGAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 200; Mature: 200

Protein sequence:

>200_residues
MLVADLVGTAVFAVEGAIAAMRSQLDLLGVMVIAFIVALGGGVTRDLLIGATPPKAVADWRYPALAFAMGGVAFVFHEQV
LGWSGSTLIVLDAAGLALFAVAGAQKALNFGISPFVSMLMGTITGVGGGVLRDIVLARVPVVLQADLYASSAFVGAAVLI
VGRRLGVPPVAAALLAGAACLLLRLLSVHFGWQLPKVLEA

Sequences:

>Translated_200_residues
MLVADLVGTAVFAVEGAIAAMRSQLDLLGVMVIAFIVALGGGVTRDLLIGATPPKAVADWRYPALAFAMGGVAFVFHEQV
LGWSGSTLIVLDAAGLALFAVAGAQKALNFGISPFVSMLMGTITGVGGGVLRDIVLARVPVVLQADLYASSAFVGAAVLI
VGRRLGVPPVAAALLAGAACLLLRLLSVHFGWQLPKVLEA
>Mature_200_residues
MLVADLVGTAVFAVEGAIAAMRSQLDLLGVMVIAFIVALGGGVTRDLLIGATPPKAVADWRYPALAFAMGGVAFVFHEQV
LGWSGSTLIVLDAAGLALFAVAGAQKALNFGISPFVSMLMGTITGVGGGVLRDIVLARVPVVLQADLYASSAFVGAAVLI
VGRRLGVPPVAAALLAGAACLLLRLLSVHFGWQLPKVLEA

Specific function: Unknown

COG id: COG2860

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0126 family [H]

Homologues:

Organism=Escherichia coli, GI87082304, Length=155, Percent_Identity=39.3548387096774, Blast_Score=97, Evalue=7e-22,
Organism=Escherichia coli, GI1786352, Length=192, Percent_Identity=34.375, Blast_Score=86, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005115 [H]

Pfam domain/function: PF03458 UPF0126 [H]

EC number: NA

Molecular weight: Translated: 20361; Mature: 20361

Theoretical pI: Translated: 8.51; Mature: 8.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVADLVGTAVFAVEGAIAAMRSQLDLLGVMVIAFIVALGGGVTRDLLIGATPPKAVADW
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHEECCCCCHHHHCC
RYPALAFAMGGVAFVFHEQVLGWSGSTLIVLDAAGLALFAVAGAQKALNFGISPFVSMLM
CHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCHHHHHHHHH
GTITGVGGGVLRDIVLARVPVVLQADLYASSAFVGAAVLIVGRRLGVPPVAAALLAGAAC
HHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
LLLRLLSVHFGWQLPKVLEA
HHHHHHHHHHCCCCHHHHCC
>Mature Secondary Structure
MLVADLVGTAVFAVEGAIAAMRSQLDLLGVMVIAFIVALGGGVTRDLLIGATPPKAVADW
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHEECCCCCHHHHCC
RYPALAFAMGGVAFVFHEQVLGWSGSTLIVLDAAGLALFAVAGAQKALNFGISPFVSMLM
CHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCHHHHHHHHH
GTITGVGGGVLRDIVLARVPVVLQADLYASSAFVGAAVLIVGRRLGVPPVAAALLAGAAC
HHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
LLLRLLSVHFGWQLPKVLEA
HHHHHHHHHHCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA