| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is 77459626
Identifier: 77459626
GI number: 77459626
Start: 3883639
End: 3884970
Strand: Reverse
Name: 77459626
Synonym: Pfl01_3404
Alternate gene names: NA
Gene position: 3884970-3883639 (Counterclockwise)
Preceding gene: 77459627
Following gene: 77459625
Centisome position: 60.34
GC content: 64.71
Gene sequence:
>1332_bases ATGAGTCTGCTACCTGACGCGGTCTGCTGGCATGAAGGCATGCAATTGCTGCCCCAGCATTTTCAGTTACAGGGCCTGCG GGCCGAGGCGCTCGGCGCGCATCTGGCTCAGGCGTGCAATCCGTGGTTTTTCGGCGTCAGCCACATGGAGTTCGATCCGT CGGCGATGAGCGCCGGCGTGGTGCGGGTGCTGTCGTTGCAAGGGACGATGCCGGACGGTCTGCCGGTCAATCTGCAAGTC GGCGTCGACCCGACGCTGGAGCTGGACGTCGCTGCCGCGATCGACGCCACGGACGATGCGACGGTGACGGTCTATCTGGC GATCAGTCCGCTGTGGCGCGCCGGTCAGTTGCTGCCGCTCAAGGGGCGTCTGCAATCGGTGGTCGGCGAGGCGTTACCGG ATCTCACCAGCGGCGAATTTCCTGAATCGATCACGGTGTGGCGTCCCAATCCACGGCTGTGTACGCAACTCAACAAAGCC GATTCAATCTGCCTGCCGCTGCTGAAAATCCGCAAGGAGGGCGGCGGTTTCCTGCCGTTGCCGTACACGCCGCCGACACC GGTCCTGCTGCCAGAATCCCCATTGGGTCGGCGGGTGGTCGGGCTCTGCGCGAGGGCGCGGGAGAAGTGCCTGTTTCTCG GCGGACGATTGCGCCAGGCGCAGCAGGCCGGCAATCAGGATGACGCGCTGGAAATCCGTCGGCAGATGACGGCGTTGTGG GCGCGCTTGCCGGAGGTGGAAGGGGCGCTGATCAGCCGTGTCGCTCATCCGCAAAGCATTTATGTGCAATTGCTGGGACT CGCCGGTGCGTGGTCGGCGCTGGATCCGCTGGCGGGTGTGCCGGCTTTTGCGCCACTGGATTTTCTCGAATTGCAGCGCG GTTACGATCCGCTGCTCGACTGGCTGGAAAACACCCTGGAACTGATCCGCGCCGGTTACCGCAGCATCGCGTTCGAGCGC GGTGAGCAGAGCTTTTCCATTCAGTTGCCGGACGAGCAACCGAGCCAGCGTCTGGTCATCGGCCTGCGCATGCCCAACGG TGCCAGCGAGCAGGCGGCCGGCGAATGGCTGCGCGGCGCGATCATCGCTTCGGCGCCGCACATTGCCTTGCTCAGCCGTC AACGGATGAGCGGTCTGACGCATCAGGCCATGAGCCGCGGCGAACAGGTGGCCTACAGCGTCGGCGACGACACCCGGCTG TTCGTGGTGACCGCCGAAGGCAGCTGGTTCGACGCGCAACTGCCGCTGATGATCGCCGCGCCGGCCACCAAGCTGACCAG CAGCCCGTGGCAAGTGGTGTTGTTTGTCGCCCAGAACAGTGAACGTGCCTGA
Upstream 100 bases:
>100_bases GCATGGCTCAAGTTCGACAGTCGCGAGATGAGCCTGGTCAGCAAGGAAAACTGAAACACACCGTCCGCCGCCGGTTCGCG GTGCAGTCGAAGGGAGTCGT
Downstream 100 bases:
>100_bases TCACACAAGGAACGTCGTATGTCGCAAGGAAGTGCCGCAAGCCTCGGGTTGCAGGACGCTCCGCTGAGCAGTGCGTTCCG CCAGACGTGGCAGCAGTGGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 443; Mature: 442
Protein sequence:
>443_residues MSLLPDAVCWHEGMQLLPQHFQLQGLRAEALGAHLAQACNPWFFGVSHMEFDPSAMSAGVVRVLSLQGTMPDGLPVNLQV GVDPTLELDVAAAIDATDDATVTVYLAISPLWRAGQLLPLKGRLQSVVGEALPDLTSGEFPESITVWRPNPRLCTQLNKA DSICLPLLKIRKEGGGFLPLPYTPPTPVLLPESPLGRRVVGLCARAREKCLFLGGRLRQAQQAGNQDDALEIRRQMTALW ARLPEVEGALISRVAHPQSIYVQLLGLAGAWSALDPLAGVPAFAPLDFLELQRGYDPLLDWLENTLELIRAGYRSIAFER GEQSFSIQLPDEQPSQRLVIGLRMPNGASEQAAGEWLRGAIIASAPHIALLSRQRMSGLTHQAMSRGEQVAYSVGDDTRL FVVTAEGSWFDAQLPLMIAAPATKLTSSPWQVVLFVAQNSERA
Sequences:
>Translated_443_residues MSLLPDAVCWHEGMQLLPQHFQLQGLRAEALGAHLAQACNPWFFGVSHMEFDPSAMSAGVVRVLSLQGTMPDGLPVNLQV GVDPTLELDVAAAIDATDDATVTVYLAISPLWRAGQLLPLKGRLQSVVGEALPDLTSGEFPESITVWRPNPRLCTQLNKA DSICLPLLKIRKEGGGFLPLPYTPPTPVLLPESPLGRRVVGLCARAREKCLFLGGRLRQAQQAGNQDDALEIRRQMTALW ARLPEVEGALISRVAHPQSIYVQLLGLAGAWSALDPLAGVPAFAPLDFLELQRGYDPLLDWLENTLELIRAGYRSIAFER GEQSFSIQLPDEQPSQRLVIGLRMPNGASEQAAGEWLRGAIIASAPHIALLSRQRMSGLTHQAMSRGEQVAYSVGDDTRL FVVTAEGSWFDAQLPLMIAAPATKLTSSPWQVVLFVAQNSERA >Mature_442_residues SLLPDAVCWHEGMQLLPQHFQLQGLRAEALGAHLAQACNPWFFGVSHMEFDPSAMSAGVVRVLSLQGTMPDGLPVNLQVG VDPTLELDVAAAIDATDDATVTVYLAISPLWRAGQLLPLKGRLQSVVGEALPDLTSGEFPESITVWRPNPRLCTQLNKAD SICLPLLKIRKEGGGFLPLPYTPPTPVLLPESPLGRRVVGLCARAREKCLFLGGRLRQAQQAGNQDDALEIRRQMTALWA RLPEVEGALISRVAHPQSIYVQLLGLAGAWSALDPLAGVPAFAPLDFLELQRGYDPLLDWLENTLELIRAGYRSIAFERG EQSFSIQLPDEQPSQRLVIGLRMPNGASEQAAGEWLRGAIIASAPHIALLSRQRMSGLTHQAMSRGEQVAYSVGDDTRLF VVTAEGSWFDAQLPLMIAAPATKLTSSPWQVVLFVAQNSERA
Specific function: Unknown
COG id: COG3522
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48189; Mature: 48058
Theoretical pI: Translated: 5.26; Mature: 5.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLLPDAVCWHEGMQLLPQHFQLQGLRAEALGAHLAQACNPWFFGVSHMEFDPSAMSAGV CCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEECCCCCCCCHHHHHHHH VRVLSLQGTMPDGLPVNLQVGVDPTLELDVAAAIDATDDATVTVYLAISPLWRAGQLLPL HEEEEECCCCCCCCEEEEEECCCCCEEEEEEEEECCCCCCEEEEEEEECCCCCCCCEEEC KGRLQSVVGEALPDLTSGEFPESITVWRPNPRLCTQLNKADSICLPLLKIRKEGGGFLPL HHHHHHHHHHHCCCCCCCCCCCCEEEECCCCHHHHHCCCCCHHHHHHHHHHHCCCCEECC PYTPPTPVLLPESPLGRRVVGLCARAREKCLFLGGRLRQAQQAGNQDDALEIRRQMTALW CCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH ARLPEVEGALISRVAHPQSIYVQLLGLAGAWSALDPLAGVPAFAPLDFLELQRGYDPLLD HHCCCHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHCCCCCCCCHHHHHHHCCCHHHHH WLENTLELIRAGYRSIAFERGEQSFSIQLPDEQPSQRLVIGLRMPNGASEQAAGEWLRGA HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHHH IIASAPHIALLSRQRMSGLTHQAMSRGEQVAYSVGDDTRLFVVTAEGSWFDAQLPLMIAA HHCCCCHHHHHHHHHHHCHHHHHHCCCCEEEEEECCCCEEEEEEECCCEECCCCCEEEEC PATKLTSSPWQVVLFVAQNSERA CCHHCCCCCCEEEEEEECCCCCC >Mature Secondary Structure SLLPDAVCWHEGMQLLPQHFQLQGLRAEALGAHLAQACNPWFFGVSHMEFDPSAMSAGV CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEECCCCCCCCHHHHHHHH VRVLSLQGTMPDGLPVNLQVGVDPTLELDVAAAIDATDDATVTVYLAISPLWRAGQLLPL HEEEEECCCCCCCCEEEEEECCCCCEEEEEEEEECCCCCCEEEEEEEECCCCCCCCEEEC KGRLQSVVGEALPDLTSGEFPESITVWRPNPRLCTQLNKADSICLPLLKIRKEGGGFLPL HHHHHHHHHHHCCCCCCCCCCCCEEEECCCCHHHHHCCCCCHHHHHHHHHHHCCCCEECC PYTPPTPVLLPESPLGRRVVGLCARAREKCLFLGGRLRQAQQAGNQDDALEIRRQMTALW CCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH ARLPEVEGALISRVAHPQSIYVQLLGLAGAWSALDPLAGVPAFAPLDFLELQRGYDPLLD HHCCCHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHCCCCCCCCHHHHHHHCCCHHHHH WLENTLELIRAGYRSIAFERGEQSFSIQLPDEQPSQRLVIGLRMPNGASEQAAGEWLRGA HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHHH IIASAPHIALLSRQRMSGLTHQAMSRGEQVAYSVGDDTRLFVVTAEGSWFDAQLPLMIAA HHCCCCHHHHHHHHHHHCHHHHHHCCCCEEEEEECCCCEEEEEEECCCEECCCCCEEEEC PATKLTSSPWQVVLFVAQNSERA CCHHCCCCCCEEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA