Click here to switch to the map view.

The map label for this gene is ygdH [H]

Identifier: 77459524

GI number: 77459524

Start: 3783423

End: 3784796

Strand: Direct

Name: ygdH [H]

Synonym: Pfl01_3302

Alternate gene names: 77459524

Gene position: 3783423-3784796 (Clockwise)

Preceding gene: 77459522

Following gene: 77459525

Centisome position: 58.76

GC content: 63.25

Gene sequence:

>1374_bases
ATGACCCAACGACACGTAATCAATGCCTCGGTCAGCCCGAAAGGCAGCCTCGAAACCCTTTCCCAACGTGAAGTTCAGCA
ACTGAGCCAGGCCGGAACCGGCAGCACCTACACCCTCTTTCGCCAGTGCGCCCTGGCCATCCTCAATACCGGCGCCCATG
TCGACAACGCAAAAACCATCCTAGAAGCCTACAAAGACTTCGAAATCCGCATCCACCAGCAGGATCGCGGCGTGCGCCTG
GAATTGCTGAACGCTCCGGCCGACGCCTTCGTCGACGGCGAAATGATCGCCAGCACCCGGGAAATGCTGTTCAGCGCCCT
GCGCGACATCGTCTACACCGAAAACGAACTCGACGCCTTGAGCATCGACCTCAGCACCTCCCAGGGCATCAGCGACTACG
TCTTCCACCTGCTGCGCAACGCGCGCACCCTGCGCCCGGGCGTCGAGCCCAAAATCGTCGTGTGCTGGGGCGGCCACTCG
ATCAACACCGAAGAATACAAATACACCAAGAAAGTCGGCCACGAACTGGGCCTGCGCAGCCTCGACATCTGCACCGGCTG
CGGTCCCGGCGTAATGAAGGGGCCGATGAAAGGCGCGACCATCGCCCACGCCAAGCAGCGGATTCACGGTGGCCGTTACC
TAGGCCTGACCGAGCCGGGCATCATCGCCGCCGAAGCGCCGAACCCGATCGTCAACGAGCTGGTGATCCTGCCGGACATC
GAAAAACGTCTGGAAGCCTTCGTCCGCGTCGGCCACGGCATCATCATCTTCCCGGGCGGTGCCGGCACCGCCGAAGAGTT
CCTGTACCTGCTGGGCATCCTGATGCACCCGGACAACGCCGGCCTGCCGTTCCCGGTGATCCTGACCGGGCCGAAACACG
CCGCGCCGTACCTGGAACAACTCGACGCTTTCGTCACCGCGACCCTCGGCGAAGCAGCGAAAAAGCACTACGAAATCATC
ATCGACGACCCGGCCGAAGTGGCGCGGCAGATGACGGCGGGCCTGAAGGCCGTGAAGCAATTCCGCCGCGAACGCGCCGA
CGCGTTCCACTTCAACTGGCTGCTGAAGATCGACGAAGGCTTCCAGCGCCCGTTCGATCCGACCCACGAAAACATGGCCA
ACCTCAAGCTGCACCGCGACCAGCCACCCCATGAACTGGCGGCCAACCTGCGCCGCGCGTTTTCCGGGATCGTGGCCGGC
AACGTCAAGGACAAGGGCATCCGCCTGATCGAGGAACACGGGCCGTACCAGATCCGTGGCGACGCCGCGATCATGCAGCC
CCTCGATCTGCTGCTCAAAGCCTTCGTCGCCCAGCACCGGATGAAACTGCCGGGCGGCGCGGCGTATGTGCCGTGCTACC
GCGTGGTGTCCTGA

Upstream 100 bases:

>100_bases
ATGGCGATACCACGCAGATCGTGCCATCTTCATTCATGGATACACACTATTCGGATGCCATTGGCCATGCCGGCAATGAC
ATCGTTTTAAGGATCACTGC

Downstream 100 bases:

>100_bases
CCCGAAGTGACAAGTGCCCGGAGCGCAACGCTTCGGGCACTCCCTATAAAAAGAGCGAACCATGGATCACATCAACCACA
TCCTGATCGTCGACGATGAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 457; Mature: 456

Protein sequence:

>457_residues
MTQRHVINASVSPKGSLETLSQREVQQLSQAGTGSTYTLFRQCALAILNTGAHVDNAKTILEAYKDFEIRIHQQDRGVRL
ELLNAPADAFVDGEMIASTREMLFSALRDIVYTENELDALSIDLSTSQGISDYVFHLLRNARTLRPGVEPKIVVCWGGHS
INTEEYKYTKKVGHELGLRSLDICTGCGPGVMKGPMKGATIAHAKQRIHGGRYLGLTEPGIIAAEAPNPIVNELVILPDI
EKRLEAFVRVGHGIIIFPGGAGTAEEFLYLLGILMHPDNAGLPFPVILTGPKHAAPYLEQLDAFVTATLGEAAKKHYEII
IDDPAEVARQMTAGLKAVKQFRRERADAFHFNWLLKIDEGFQRPFDPTHENMANLKLHRDQPPHELAANLRRAFSGIVAG
NVKDKGIRLIEEHGPYQIRGDAAIMQPLDLLLKAFVAQHRMKLPGGAAYVPCYRVVS

Sequences:

>Translated_457_residues
MTQRHVINASVSPKGSLETLSQREVQQLSQAGTGSTYTLFRQCALAILNTGAHVDNAKTILEAYKDFEIRIHQQDRGVRL
ELLNAPADAFVDGEMIASTREMLFSALRDIVYTENELDALSIDLSTSQGISDYVFHLLRNARTLRPGVEPKIVVCWGGHS
INTEEYKYTKKVGHELGLRSLDICTGCGPGVMKGPMKGATIAHAKQRIHGGRYLGLTEPGIIAAEAPNPIVNELVILPDI
EKRLEAFVRVGHGIIIFPGGAGTAEEFLYLLGILMHPDNAGLPFPVILTGPKHAAPYLEQLDAFVTATLGEAAKKHYEII
IDDPAEVARQMTAGLKAVKQFRRERADAFHFNWLLKIDEGFQRPFDPTHENMANLKLHRDQPPHELAANLRRAFSGIVAG
NVKDKGIRLIEEHGPYQIRGDAAIMQPLDLLLKAFVAQHRMKLPGGAAYVPCYRVVS
>Mature_456_residues
TQRHVINASVSPKGSLETLSQREVQQLSQAGTGSTYTLFRQCALAILNTGAHVDNAKTILEAYKDFEIRIHQQDRGVRLE
LLNAPADAFVDGEMIASTREMLFSALRDIVYTENELDALSIDLSTSQGISDYVFHLLRNARTLRPGVEPKIVVCWGGHSI
NTEEYKYTKKVGHELGLRSLDICTGCGPGVMKGPMKGATIAHAKQRIHGGRYLGLTEPGIIAAEAPNPIVNELVILPDIE
KRLEAFVRVGHGIIIFPGGAGTAEEFLYLLGILMHPDNAGLPFPVILTGPKHAAPYLEQLDAFVTATLGEAAKKHYEIII
DDPAEVARQMTAGLKAVKQFRRERADAFHFNWLLKIDEGFQRPFDPTHENMANLKLHRDQPPHELAANLRRAFSGIVAGN
VKDKGIRLIEEHGPYQIRGDAAIMQPLDLLLKAFVAQHRMKLPGGAAYVPCYRVVS

Specific function: Unknown

COG id: COG1611

COG function: function code R; Predicted Rossmann fold nucleotide-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LOG family [H]

Homologues:

Organism=Escherichia coli, GI1789159, Length=451, Percent_Identity=57.649667405765, Blast_Score=551, Evalue=1e-158,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021826
- InterPro:   IPR005269 [H]

Pfam domain/function: PF11892 DUF3412; PF03641 Lysine_decarbox [H]

EC number: NA

Molecular weight: Translated: 50381; Mature: 50250

Theoretical pI: Translated: 7.32; Mature: 7.32

Prosite motif: PS00046 HISTONE_H2A ; PS00217 SUGAR_TRANSPORT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQRHVINASVSPKGSLETLSQREVQQLSQAGTGSTYTLFRQCALAILNTGAHVDNAKTI
CCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHH
LEAYKDFEIRIHQQDRGVRLELLNAPADAFVDGEMIASTREMLFSALRDIVYTENELDAL
HHHHCCCEEEEEECCCCCEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCEE
SIDLSTSQGISDYVFHLLRNARTLRPGVEPKIVVCWGGHSINTEEYKYTKKVGHELGLRS
EEECCCCCCHHHHHHHHHHCCHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCH
LDICTGCGPGVMKGPMKGATIAHAKQRIHGGRYLGLTEPGIIAAEAPNPIVNELVILPDI
HHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCEEECCCCCCEEEECCCCHHHHCEEECCCH
EKRLEAFVRVGHGIIIFPGGAGTAEEFLYLLGILMHPDNAGLPFPVILTGPKHAAPYLEQ
HHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHH
LDAFVTATLGEAAKKHYEIIIDDPAEVARQMTAGLKAVKQFRRERADAFHFNWLLKIDEG
HHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCC
FQRPFDPTHENMANLKLHRDQPPHELAANLRRAFSGIVAGNVKDKGIRLIEEHGPYQIRG
CCCCCCCCCCCHHCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEEEC
DAAIMQPLDLLLKAFVAQHRMKLPGGAAYVPCYRVVS
CHHHHHHHHHHHHHHHHHHHHCCCCCCEECCHHCCCC
>Mature Secondary Structure 
TQRHVINASVSPKGSLETLSQREVQQLSQAGTGSTYTLFRQCALAILNTGAHVDNAKTI
CCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHH
LEAYKDFEIRIHQQDRGVRLELLNAPADAFVDGEMIASTREMLFSALRDIVYTENELDAL
HHHHCCCEEEEEECCCCCEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCEE
SIDLSTSQGISDYVFHLLRNARTLRPGVEPKIVVCWGGHSINTEEYKYTKKVGHELGLRS
EEECCCCCCHHHHHHHHHHCCHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCH
LDICTGCGPGVMKGPMKGATIAHAKQRIHGGRYLGLTEPGIIAAEAPNPIVNELVILPDI
HHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCEEECCCCCCEEEECCCCHHHHCEEECCCH
EKRLEAFVRVGHGIIIFPGGAGTAEEFLYLLGILMHPDNAGLPFPVILTGPKHAAPYLEQ
HHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHH
LDAFVTATLGEAAKKHYEIIIDDPAEVARQMTAGLKAVKQFRRERADAFHFNWLLKIDEG
HHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCC
FQRPFDPTHENMANLKLHRDQPPHELAANLRRAFSGIVAGNVKDKGIRLIEEHGPYQIRG
CCCCCCCCCCCHHCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEEEC
DAAIMQPLDLLLKAFVAQHRMKLPGGAAYVPCYRVVS
CHHHHHHHHHHHHHHHHHHHHCCCCCCEECCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]