BacMap

Definition	Pseudomonas fluorescens Pf0-1 chromosome, complete genome.
Accession	NC_007492
Length	6,438,405

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The map label for this gene is yusZ [H]

Identifier: 77459500

GI number: 77459500

Start: 3761195

End: 3762025

Strand: Reverse

Name: yusZ [H]

Synonym: Pfl01_3278

Alternate gene names: 77459500

Gene position: 3762025-3761195 (Counterclockwise)

Preceding gene: 77459502

Following gene: 77459499

Centisome position: 58.43

GC content: 63.18

Gene sequence:

>831_bases
ATGCGTACCTGGCTGATTACCGGAGCTTCCCGTGGTTTTGGCACCCTTATCGCTGAACAGGCCCTGCGTGCCGGTGACGC
GGTGATTGCCACCGCCCGCAACCCGCAAGACATCACCGACCGCCTCGGCGATCACCCGAACCTGCTGGCGGTGCGCCTGG
ATGTCACCCGCGAAGAGGAAGCCCACCAAGCGGTGGCAGAAGGCATCAAGCGCTTCGGTCGCATCGACGTGCTGATCAAC
AATGCCGGCTTCGGCGTGTTGGGCGCCGTCGAAGAAACCAGCGCCAGCGAAACCGAGCGCCTGTTCGCCACCAACGTGTT
CGGTCTGCTCAACGTCACCCGCGCCGTGCTGCCGCACATGCGCGCCCAGCGCAGTGGACGGGTCATCAATATCTCGTCGA
TTGGCGGTTATCAGGCCTACGTGGGCTGGGGTGTCTACGGCTCGACCAAGTTCGCAGTGGAAGGCATCAGCGAAGCGCTG
CATCAGGAACTGGCGCCGCTGGGCATTCATGCCACGGTGGTCGAACCGGGCTTCTTCCGCACTGACTTCCTCGACGAACA
GTCGCTGGTCAAGACCGCATTGGTGCTGCCGGACTACGACGAAACCGTCGGCAAGATGCGCACCTTTGCCGAAGCGGCCA
ACCATGCGCAACCGGGCGATCCGCAGAAGTTTGCCGAAGCGATGCTGGCGCTGGTCAACGCACCGAACCCGCCGCAGCGT
CTGGCGCTGGGCAGCGACACGGTTGCACGAATCGAGGCGAAGAACCGCTTGGTGGTGCAGGAATTGGCCGAGTGGAATGA
GCTGGCGCTGTCCACGGATTTCAAGGACTGA

Upstream 100 bases:

>100_bases
TTGTTGGGATTATCACATCAGTAGCACGGCTTTAAAGTCGACTCAACTCATCAAGAAGGCCCCGGCAATCTCGCCAGGGT
CACCGACAGGAGGAGTTGAT

Downstream 100 bases:

>100_bases
CCTAGCCCCTCGTTGAAGCCATCGCAGGCTGCGCTCTGTTGATCGCAGCCTTGTTTTCTATTCATTGGATGAAATCCATG
ACAACCGTCTCCCAATACCA

Product: Short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: ORFA [H]

Number of amino acids: Translated: 276; Mature: 276

Protein sequence:

>276_residues
MRTWLITGASRGFGTLIAEQALRAGDAVIATARNPQDITDRLGDHPNLLAVRLDVTREEEAHQAVAEGIKRFGRIDVLIN
NAGFGVLGAVEETSASETERLFATNVFGLLNVTRAVLPHMRAQRSGRVINISSIGGYQAYVGWGVYGSTKFAVEGISEAL
HQELAPLGIHATVVEPGFFRTDFLDEQSLVKTALVLPDYDETVGKMRTFAEAANHAQPGDPQKFAEAMLALVNAPNPPQR
LALGSDTVARIEAKNRLVVQELAEWNELALSTDFKD

Sequences:

>Translated_276_residues
MRTWLITGASRGFGTLIAEQALRAGDAVIATARNPQDITDRLGDHPNLLAVRLDVTREEEAHQAVAEGIKRFGRIDVLIN
NAGFGVLGAVEETSASETERLFATNVFGLLNVTRAVLPHMRAQRSGRVINISSIGGYQAYVGWGVYGSTKFAVEGISEAL
HQELAPLGIHATVVEPGFFRTDFLDEQSLVKTALVLPDYDETVGKMRTFAEAANHAQPGDPQKFAEAMLALVNAPNPPQR
LALGSDTVARIEAKNRLVVQELAEWNELALSTDFKD
>Mature_276_residues
MRTWLITGASRGFGTLIAEQALRAGDAVIATARNPQDITDRLGDHPNLLAVRLDVTREEEAHQAVAEGIKRFGRIDVLIN
NAGFGVLGAVEETSASETERLFATNVFGLLNVTRAVLPHMRAQRSGRVINISSIGGYQAYVGWGVYGSTKFAVEGISEAL
HQELAPLGIHATVVEPGFFRTDFLDEQSLVKTALVLPDYDETVGKMRTFAEAANHAQPGDPQKFAEAMLALVNAPNPPQR
LALGSDTVARIEAKNRLVVQELAEWNELALSTDFKD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI7657478, Length=253, Percent_Identity=32.0158102766798, Blast_Score=109, Evalue=3e-24,
Organism=Homo sapiens, GI4503817, Length=181, Percent_Identity=29.8342541436464, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI40548397, Length=210, Percent_Identity=33.3333333333333, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI214010158, Length=210, Percent_Identity=33.3333333333333, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI214010156, Length=210, Percent_Identity=33.3333333333333, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI22758144, Length=210, Percent_Identity=33.3333333333333, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI223718074, Length=256, Percent_Identity=32.03125, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI150247226, Length=257, Percent_Identity=29.9610894941634, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI20149619, Length=190, Percent_Identity=30, Blast_Score=93, Evalue=3e-19,
Organism=Homo sapiens, GI22507405, Length=190, Percent_Identity=34.7368421052632, Blast_Score=92, Evalue=4e-19,
Organism=Homo sapiens, GI40254992, Length=209, Percent_Identity=31.5789473684211, Blast_Score=92, Evalue=5e-19,
Organism=Homo sapiens, GI50726952, Length=194, Percent_Identity=37.1134020618557, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI19743808, Length=252, Percent_Identity=28.968253968254, Blast_Score=89, Evalue=4e-18,
Organism=Homo sapiens, GI5031737, Length=187, Percent_Identity=31.0160427807487, Blast_Score=89, Evalue=5e-18,
Organism=Homo sapiens, GI33667109, Length=188, Percent_Identity=31.9148936170213, Blast_Score=88, Evalue=7e-18,
Organism=Homo sapiens, GI44680136, Length=235, Percent_Identity=29.7872340425532, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI44680133, Length=235, Percent_Identity=29.7872340425532, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI17738292, Length=235, Percent_Identity=29.7872340425532, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI59889578, Length=159, Percent_Identity=33.9622641509434, Blast_Score=85, Evalue=8e-17,
Organism=Homo sapiens, GI119392083, Length=191, Percent_Identity=32.4607329842932, Blast_Score=84, Evalue=9e-17,
Organism=Homo sapiens, GI7706318, Length=198, Percent_Identity=29.7979797979798, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI4758504, Length=249, Percent_Identity=27.710843373494, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI32483357, Length=184, Percent_Identity=27.1739130434783, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI109715829, Length=251, Percent_Identity=27.8884462151394, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI66933014, Length=166, Percent_Identity=33.1325301204819, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI4504503, Length=187, Percent_Identity=32.0855614973262, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI142976729, Length=191, Percent_Identity=26.7015706806283, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI83715985, Length=183, Percent_Identity=28.4153005464481, Blast_Score=71, Evalue=9e-13,
Organism=Homo sapiens, GI210032110, Length=191, Percent_Identity=25.6544502617801, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI157739938, Length=156, Percent_Identity=26.9230769230769, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI40807363, Length=189, Percent_Identity=28.5714285714286, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI7705925, Length=183, Percent_Identity=26.775956284153, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI1787820, Length=178, Percent_Identity=37.0786516853933, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1786701, Length=185, Percent_Identity=34.5945945945946, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI87082100, Length=184, Percent_Identity=35.8695652173913, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1787335, Length=186, Percent_Identity=35.4838709677419, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI2367365, Length=182, Percent_Identity=31.3186813186813, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1786812, Length=232, Percent_Identity=27.5862068965517, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI87082160, Length=186, Percent_Identity=25.2688172043011, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1790717, Length=186, Percent_Identity=30.1075268817204, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1787526, Length=234, Percent_Identity=27.7777777777778, Blast_Score=67, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI71994604, Length=240, Percent_Identity=30.8333333333333, Blast_Score=91, Evalue=9e-19,
Organism=Caenorhabditis elegans, GI115534660, Length=195, Percent_Identity=29.2307692307692, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI71994600, Length=191, Percent_Identity=30.8900523560209, Blast_Score=85, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17560676, Length=243, Percent_Identity=25.9259259259259, Blast_Score=84, Evalue=7e-17,
Organism=Caenorhabditis elegans, GI17562910, Length=197, Percent_Identity=28.4263959390863, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17507613, Length=199, Percent_Identity=29.6482412060301, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI32563809, Length=199, Percent_Identity=29.6482412060301, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17560332, Length=194, Percent_Identity=30.9278350515464, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17562904, Length=252, Percent_Identity=27.7777777777778, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17561402, Length=188, Percent_Identity=26.5957446808511, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI71997402, Length=187, Percent_Identity=31.5508021390374, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17557780, Length=195, Percent_Identity=29.2307692307692, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17538486, Length=248, Percent_Identity=29.4354838709677, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI71982365, Length=195, Percent_Identity=27.6923076923077, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17508895, Length=192, Percent_Identity=27.6041666666667, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17567345, Length=148, Percent_Identity=28.3783783783784, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17551412, Length=196, Percent_Identity=28.0612244897959, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17570069, Length=187, Percent_Identity=28.8770053475936, Blast_Score=71, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17559104, Length=248, Percent_Identity=27.4193548387097, Blast_Score=71, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17565030, Length=198, Percent_Identity=29.7979797979798, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17568967, Length=145, Percent_Identity=35.8620689655172, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17562906, Length=196, Percent_Identity=28.0612244897959, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17560150, Length=206, Percent_Identity=27.1844660194175, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17544670, Length=193, Percent_Identity=27.4611398963731, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17562908, Length=196, Percent_Identity=27.0408163265306, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17538480, Length=244, Percent_Identity=25, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17563726, Length=195, Percent_Identity=26.1538461538462, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17538182, Length=199, Percent_Identity=30.1507537688442, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI115534694, Length=181, Percent_Identity=28.7292817679558, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17560220, Length=233, Percent_Identity=24.8927038626609, Blast_Score=64, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17558628, Length=190, Percent_Identity=30, Blast_Score=64, Evalue=9e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=193, Percent_Identity=33.160621761658, Blast_Score=101, Evalue=1e-22,
Organism=Saccharomyces cerevisiae, GI6322067, Length=283, Percent_Identity=25.4416961130742, Blast_Score=74, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6322861, Length=191, Percent_Identity=29.8429319371728, Blast_Score=72, Evalue=7e-14,
Organism=Saccharomyces cerevisiae, GI6322226, Length=188, Percent_Identity=28.1914893617021, Blast_Score=70, Evalue=5e-13,
Organism=Saccharomyces cerevisiae, GI6322227, Length=195, Percent_Identity=26.6666666666667, Blast_Score=66, Evalue=8e-12,
Organism=Drosophila melanogaster, GI28571526, Length=202, Percent_Identity=32.1782178217822, Blast_Score=104, Evalue=6e-23,
Organism=Drosophila melanogaster, GI23397609, Length=184, Percent_Identity=33.1521739130435, Blast_Score=97, Evalue=9e-21,
Organism=Drosophila melanogaster, GI21355319, Length=187, Percent_Identity=28.3422459893048, Blast_Score=96, Evalue=3e-20,
Organism=Drosophila melanogaster, GI21357041, Length=201, Percent_Identity=30.8457711442786, Blast_Score=95, Evalue=5e-20,
Organism=Drosophila melanogaster, GI21358495, Length=271, Percent_Identity=28.7822878228782, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24643142, Length=183, Percent_Identity=30.6010928961749, Blast_Score=92, Evalue=3e-19,
Organism=Drosophila melanogaster, GI24644339, Length=188, Percent_Identity=27.1276595744681, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI281364892, Length=169, Percent_Identity=34.9112426035503, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24641232, Length=200, Percent_Identity=30, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI21356301, Length=195, Percent_Identity=27.1794871794872, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI17737361, Length=251, Percent_Identity=27.0916334661355, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24641388, Length=213, Percent_Identity=27.6995305164319, Blast_Score=74, Evalue=9e-14,
Organism=Drosophila melanogaster, GI28571387, Length=218, Percent_Identity=28.8990825688073, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24648944, Length=197, Percent_Identity=29.4416243654822, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24639444, Length=189, Percent_Identity=28.042328042328, Blast_Score=72, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24663911, Length=198, Percent_Identity=26.7676767676768, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI281364494, Length=200, Percent_Identity=30, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24665243, Length=192, Percent_Identity=27.6041666666667, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI21355631, Length=165, Percent_Identity=26.0606060606061, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI221331218, Length=192, Percent_Identity=27.6041666666667, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24665247, Length=197, Percent_Identity=27.4111675126904, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI116007236, Length=211, Percent_Identity=27.9620853080569, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI221331216, Length=193, Percent_Identity=26.9430051813472, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24640492, Length=167, Percent_Identity=28.1437125748503, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24581726, Length=185, Percent_Identity=27.027027027027, Blast_Score=65, Evalue=7e-11,
Organism=Drosophila melanogaster, GI116007238, Length=180, Percent_Identity=29.4444444444444, Blast_Score=64, Evalue=8e-11,

Paralogues:

None

Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 29946; Mature: 29946

Theoretical pI: Translated: 5.03; Mature: 5.03

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTWLITGASRGFGTLIAEQALRAGDAVIATARNPQDITDRLGDHPNLLAVRLDVTREEE
CCEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCHHHHHHHCCCCCEEEEEEECCCCHH
AHQAVAEGIKRFGRIDVLINNAGFGVLGAVEETSASETERLFATNVFGLLNVTRAVLPHM
HHHHHHHHHHHCCCEEEEEECCCCCEEECHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
RAQRSGRVINISSIGGYQAYVGWGVYGSTKFAVEGISEALHQELAPLGIHATVVEPGFFR
HHHHCCCEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
TDFLDEQSLVKTALVLPDYDETVGKMRTFAEAANHAQPGDPQKFAEAMLALVNAPNPPQR
HHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHH
LALGSDTVARIEAKNRLVVQELAEWNELALSTDFKD
EECCCCHHEEHHHCCHHHHHHHHHHHHHEECCCCCC
>Mature Secondary Structure
MRTWLITGASRGFGTLIAEQALRAGDAVIATARNPQDITDRLGDHPNLLAVRLDVTREEE
CCEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCHHHHHHHCCCCCEEEEEEECCCCHH
AHQAVAEGIKRFGRIDVLINNAGFGVLGAVEETSASETERLFATNVFGLLNVTRAVLPHM
HHHHHHHHHHHCCCEEEEEECCCCCEEECHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
RAQRSGRVINISSIGGYQAYVGWGVYGSTKFAVEGISEALHQELAPLGIHATVVEPGFFR
HHHHCCCEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
TDFLDEQSLVKTALVLPDYDETVGKMRTFAEAANHAQPGDPQKFAEAMLALVNAPNPPQR
HHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHH
LALGSDTVARIEAKNRLVVQELAEWNELALSTDFKD
EECCCCHHEEHHHCCHHHHHHHHHHHHHEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353931; 9384377; 8396117 [H]