| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is yxlA [H]
Identifier: 77459492
GI number: 77459492
Start: 3752077
End: 3753492
Strand: Direct
Name: yxlA [H]
Synonym: Pfl01_3270
Alternate gene names: 77459492
Gene position: 3752077-3753492 (Clockwise)
Preceding gene: 77459491
Following gene: 77459494
Centisome position: 58.28
GC content: 62.5
Gene sequence:
>1416_bases ATGGCCACCTCTGCAACAACGTCCGCACCGCTCATTGAGAAACACACGATCGGCTATGTGCCGCCCGAAGATCGCCACGG AAAGGTTCGGGATCTGTTCACCCTCTGGTTCGGCGGCAATATCGCGCCGTTGCCCATCGTCACCGGCGCCCTCGGCGTGC AGCTGTTTCACCTGAATCTGGTGTGGGGCATCGTCGCCATTCTGGTTGGCCATCTGGTCGGCGGTGTGCTGATGGCGCTG CACTCGGCGCAGGGCCCGCAGATGGGCATTCCGCAGATGATCCAGAGCCGCGCACAATTCGGCTCCCTCGGCGCACTGCT GGTGGTGTTGATCGCCGGCGTCATGTACATCGGCTTCTTCGCCTCCAACATCGTGCTCGCCGGCAAGTCCCTGCATGGAT TGGTCGACAGCGTTCCGGTGCCGGTCGGCATCGTCATCGGCGCGCTGGGTTCGGGGATCATCGGGATCATCGGGTACCGC TTCATCCACGTGCTCAACCGCATCGGCACCTGGGTCTTGGGGATCGGCATCGTGGTCGGCTTCGGCTACATCCTCACCCA CATCCAGACCGATGATTTCCTCACACGCGGCAGCTTCAACCTCTCGGGCTGGCTGGCAACTGTGTCGCTGGCAGCGCTGT GGCAGATCGCGTTTGCGCCGTACGTCTCGGACTACTCGCGTTACCTGCCGGCGAATGTGCCGGTGGCAGCGACCTTCTGG ACAACCTATCTGGGATCGGCGCTGGGCTCGAGCCTGTCGTTCGTATTCGGCGCCGTCGCCGTGCTGGCAACCCCGGTGGG TATGGACACCATGGACGCGGTGAAACTCGCCACCGGCGCCATCGGCCCGCTGATGCTGGTGCTGTTTCTGCTCAGCGTCA TCAGCCACAACGCCCTCAACCTGTACGGCGCGGTGCTGTCGCTGATCACCCTGGTGCAGACCTTTGCCTACCGCTGGATT CCAACCGCCAAGAGCCGCGCGGTGATTTCGATCATCGTCCTGCTGGCCTGCTGTTTCGCTGCGGTCGGCGCCTCGGCAGA CTTCATCGGCCACTTCGTCGACATGGTGCTGGTGTTGTTGGTCGTACTGGTGCCGTGGACCGCGATCAACCTGATCGACT TCTACGCCATCCACAAAGGCCAGTACGACATCGGCTCGATCTTCCAGGTCGACGGCGGCATCTACGGCCGTTACAACCCG CAGGCCTTGCTGGCTTACGCGATCGGTATCGCGGTGCAGATTCCGTTCATGAACACGCCGCTGTACGTCGGGCCGGTGTC GGCGCACATCAACGGCGCGGACCTGTCGTGGCTGGTTGGCTTGCTGGTGACCTCGCCGCTGTATTTCTGGCTGGCGACTC GTGACAGTGCTTATCGTCGGCGGCTGACTTCCGGAAAACTGGCGAACAATCTGTAA
Upstream 100 bases:
>100_bases CCCTTTCCTTGCCCATGATCAACCCCAACAAGAAATGCGCCGTCCGTGCCGGCGCTCACTGAAGTACGTCCACGTACTCG TCCTTGCCTTGGAGTTCGTC
Downstream 100 bases:
>100_bases GTCATCCGTTTTGCGCTGACACGCGAAGGCCCTCGCAAATGAGGGCCTTTTTTTGTTTTGGATGGAGCCGTCTATTTAGC TTTGAACGCCTCACGCCGCG
Product: cytosine/purines, uracil, thiamine, allantoin permease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 471; Mature: 470
Protein sequence:
>471_residues MATSATTSAPLIEKHTIGYVPPEDRHGKVRDLFTLWFGGNIAPLPIVTGALGVQLFHLNLVWGIVAILVGHLVGGVLMAL HSAQGPQMGIPQMIQSRAQFGSLGALLVVLIAGVMYIGFFASNIVLAGKSLHGLVDSVPVPVGIVIGALGSGIIGIIGYR FIHVLNRIGTWVLGIGIVVGFGYILTHIQTDDFLTRGSFNLSGWLATVSLAALWQIAFAPYVSDYSRYLPANVPVAATFW TTYLGSALGSSLSFVFGAVAVLATPVGMDTMDAVKLATGAIGPLMLVLFLLSVISHNALNLYGAVLSLITLVQTFAYRWI PTAKSRAVISIIVLLACCFAAVGASADFIGHFVDMVLVLLVVLVPWTAINLIDFYAIHKGQYDIGSIFQVDGGIYGRYNP QALLAYAIGIAVQIPFMNTPLYVGPVSAHINGADLSWLVGLLVTSPLYFWLATRDSAYRRRLTSGKLANNL
Sequences:
>Translated_471_residues MATSATTSAPLIEKHTIGYVPPEDRHGKVRDLFTLWFGGNIAPLPIVTGALGVQLFHLNLVWGIVAILVGHLVGGVLMAL HSAQGPQMGIPQMIQSRAQFGSLGALLVVLIAGVMYIGFFASNIVLAGKSLHGLVDSVPVPVGIVIGALGSGIIGIIGYR FIHVLNRIGTWVLGIGIVVGFGYILTHIQTDDFLTRGSFNLSGWLATVSLAALWQIAFAPYVSDYSRYLPANVPVAATFW TTYLGSALGSSLSFVFGAVAVLATPVGMDTMDAVKLATGAIGPLMLVLFLLSVISHNALNLYGAVLSLITLVQTFAYRWI PTAKSRAVISIIVLLACCFAAVGASADFIGHFVDMVLVLLVVLVPWTAINLIDFYAIHKGQYDIGSIFQVDGGIYGRYNP QALLAYAIGIAVQIPFMNTPLYVGPVSAHINGADLSWLVGLLVTSPLYFWLATRDSAYRRRLTSGKLANNL >Mature_470_residues ATSATTSAPLIEKHTIGYVPPEDRHGKVRDLFTLWFGGNIAPLPIVTGALGVQLFHLNLVWGIVAILVGHLVGGVLMALH SAQGPQMGIPQMIQSRAQFGSLGALLVVLIAGVMYIGFFASNIVLAGKSLHGLVDSVPVPVGIVIGALGSGIIGIIGYRF IHVLNRIGTWVLGIGIVVGFGYILTHIQTDDFLTRGSFNLSGWLATVSLAALWQIAFAPYVSDYSRYLPANVPVAATFWT TYLGSALGSSLSFVFGAVAVLATPVGMDTMDAVKLATGAIGPLMLVLFLLSVISHNALNLYGAVLSLITLVQTFAYRWIP TAKSRAVISIIVLLACCFAAVGASADFIGHFVDMVLVLLVVLVPWTAINLIDFYAIHKGQYDIGSIFQVDGGIYGRYNPQ ALLAYAIGIAVQIPFMNTPLYVGPVSAHINGADLSWLVGLLVTSPLYFWLATRDSAYRRRLTSGKLANNL
Specific function: Unknown
COG id: COG1457
COG function: function code F; Purine-cytosine permease and related proteins
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the purine-cytosine permease family [H]
Homologues:
Organism=Saccharomyces cerevisiae, GI6320903, Length=353, Percent_Identity=24.3626062322946, Blast_Score=67, Evalue=6e-12, Organism=Saccharomyces cerevisiae, GI6320897, Length=346, Percent_Identity=23.4104046242775, Blast_Score=65, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6320902, Length=372, Percent_Identity=24.1935483870968, Blast_Score=64, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001248 [H]
Pfam domain/function: PF02133 Transp_cyt_pur [H]
EC number: NA
Molecular weight: Translated: 50123; Mature: 49992
Theoretical pI: Translated: 9.08; Mature: 9.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATSATTSAPLIEKHTIGYVPPEDRHGKVRDLFTLWFGGNIAPLPIVTGALGVQLFHLNL CCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH VWGIVAILVGHLVGGVLMALHSAQGPQMGIPQMIQSRAQFGSLGALLVVLIAGVMYIGFF HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH ASNIVLAGKSLHGLVDSVPVPVGIVIGALGSGIIGIIGYRFIHVLNRIGTWVLGIGIVVG HHHHHEECCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FGYILTHIQTDDFLTRGSFNLSGWLATVSLAALWQIAFAPYVSDYSRYLPANVPVAATFW HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH TTYLGSALGSSLSFVFGAVAVLATPVGMDTMDAVKLATGAIGPLMLVLFLLSVISHNALN HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHH LYGAVLSLITLVQTFAYRWIPTAKSRAVISIIVLLACCFAAVGASADFIGHFVDMVLVLL HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH VVLVPWTAINLIDFYAIHKGQYDIGSIFQVDGGIYGRYNPQALLAYAIGIAVQIPFMNTP HHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHEEECCCCCC LYVGPVSAHINGADLSWLVGLLVTSPLYFWLATRDSAYRRRLTSGKLANNL EEEECCCCCCCCCHHHHHHHHHHHCCHHEEEECCCHHHHHHHHCCCCCCCC >Mature Secondary Structure ATSATTSAPLIEKHTIGYVPPEDRHGKVRDLFTLWFGGNIAPLPIVTGALGVQLFHLNL CCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH VWGIVAILVGHLVGGVLMALHSAQGPQMGIPQMIQSRAQFGSLGALLVVLIAGVMYIGFF HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH ASNIVLAGKSLHGLVDSVPVPVGIVIGALGSGIIGIIGYRFIHVLNRIGTWVLGIGIVVG HHHHHEECCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FGYILTHIQTDDFLTRGSFNLSGWLATVSLAALWQIAFAPYVSDYSRYLPANVPVAATFW HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH TTYLGSALGSSLSFVFGAVAVLATPVGMDTMDAVKLATGAIGPLMLVLFLLSVISHNALN HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHH LYGAVLSLITLVQTFAYRWIPTAKSRAVISIIVLLACCFAAVGASADFIGHFVDMVLVLL HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH VVLVPWTAINLIDFYAIHKGQYDIGSIFQVDGGIYGRYNPQALLAYAIGIAVQIPFMNTP HHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHEEECCCCCC LYVGPVSAHINGADLSWLVGLLVTSPLYFWLATRDSAYRRRLTSGKLANNL EEEECCCCCCCCCHHHHHHHHHHHCCHHEEEECCCHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8969509; 9384377 [H]