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The map label for this gene is rhaR [C]

Identifier: 77459389

GI number: 77459389

Start: 3635805

End: 3636836

Strand: Reverse

Name: rhaR [C]

Synonym: Pfl01_3167

Alternate gene names: 77459389

Gene position: 3636836-3635805 (Counterclockwise)

Preceding gene: 77459393

Following gene: 77459388

Centisome position: 56.49

GC content: 61.53

Gene sequence:

>1032_bases
ATGAACGTAAAAGTCCAAGACCCCACCTTCGAACTGGCGCTGGTGTCGCCATTTCTCCTGCAAACCCTGGCCGAAGTCGC
CGCCAACAAGGGCGTCGAGCCGCAGAGTCTGTGCCGTGGCCTGGGGTTTGATTTCGACGACCTGCAGGATCCGGCGCAGC
GGATTTCCTATCGCCAGGCCGTGGCGATGATCCAGCGTGCGCTCAAGGCTTTGCCCAATCAGGGGCTGGGCCTGTGGGTC
GGCGCGCAGAACGTGCTCGGTACGCTGGGTCTGCTCGGGCATGTGCTGTCGCTGTGCAAGACCTTGCGCGACGCGTTCGA
AATCGGGGTTCGGCATCAGCACACTTCCGGCGGGATCGTGGTTTCCAGCGTCGATGTGGTAGGCGATCAGGTCTACGTCG
ACGTTGAGTGCCGGCTGCCGTTTGCCGAGGTGCAGGTGTTTGCCGTTGAAGAGTTTTTCGCCAGCCTGCTGGTCTATGGC
CGGGCGCTGGTGGGCGAGACGTTCAAGCCGATTGCCGTGGAGTTCATGCACGCCGCGCCGGATTACCTGGATGAGTACAG
GCGGTTGCTGGGGCCGGAGGTGCGCTTCGGGTGCCTGCACAACCGCATGTTGATCGACGTGCAATGGCTGGATGTGAACC
TGCCCAACCACCATTCGCTGGCGCTGCGTCAGGCGGTCAAGTTGCTGGAGCTGGAGGCGGCGCAGGTTCATCAGAAACTC
GATCTGATCCAGGCGGTGGAGCGGGCGATTGCCCGTGACTTGAGCCGGGGCAGCCATATTGAAAAGATTGCCGCCGACTT
GAATATGAGCAGCCGCACTCTGCGCCGGCGGCTGACTGAGCATTCGCTGACGTTCGAGGCGCTGCTGGAACAAGTGCGTC
AGGCGCGCACCATGAGTTTGCTGGCTAATCCTGATATGCCGATTGAGCGGATTACCGAGGAAGTCGGCTACAGCGACGTG
CGTAGTTTTCGCCGGGCGTTCAAACGCTGGACGGGGAAAAGCCCGAGTGCGTGGCGCAGTGCTTCGATTTGA

Upstream 100 bases:

>100_bases
AGGGGACTTCTGCGGACAGTCCGCCAACCCTGTGCTAACTTCCTTCGACATAACCGGTTACAAAAATAACAATTCAGCGT
GATCCGGGATGTCAGCCTCC

Downstream 100 bases:

>100_bases
TCTGAGACCGATGGCCCTCACCCCAGCCCTCTCCCGGAGGGAGAGGGAGCCGATTGGGGGATATTCGAGAGATACGCCGA
CCTGAAAGTTTTTCAGCGAA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 343; Mature: 343

Protein sequence:

>343_residues
MNVKVQDPTFELALVSPFLLQTLAEVAANKGVEPQSLCRGLGFDFDDLQDPAQRISYRQAVAMIQRALKALPNQGLGLWV
GAQNVLGTLGLLGHVLSLCKTLRDAFEIGVRHQHTSGGIVVSSVDVVGDQVYVDVECRLPFAEVQVFAVEEFFASLLVYG
RALVGETFKPIAVEFMHAAPDYLDEYRRLLGPEVRFGCLHNRMLIDVQWLDVNLPNHHSLALRQAVKLLELEAAQVHQKL
DLIQAVERAIARDLSRGSHIEKIAADLNMSSRTLRRRLTEHSLTFEALLEQVRQARTMSLLANPDMPIERITEEVGYSDV
RSFRRAFKRWTGKSPSAWRSASI

Sequences:

>Translated_343_residues
MNVKVQDPTFELALVSPFLLQTLAEVAANKGVEPQSLCRGLGFDFDDLQDPAQRISYRQAVAMIQRALKALPNQGLGLWV
GAQNVLGTLGLLGHVLSLCKTLRDAFEIGVRHQHTSGGIVVSSVDVVGDQVYVDVECRLPFAEVQVFAVEEFFASLLVYG
RALVGETFKPIAVEFMHAAPDYLDEYRRLLGPEVRFGCLHNRMLIDVQWLDVNLPNHHSLALRQAVKLLELEAAQVHQKL
DLIQAVERAIARDLSRGSHIEKIAADLNMSSRTLRRRLTEHSLTFEALLEQVRQARTMSLLANPDMPIERITEEVGYSDV
RSFRRAFKRWTGKSPSAWRSASI
>Mature_343_residues
MNVKVQDPTFELALVSPFLLQTLAEVAANKGVEPQSLCRGLGFDFDDLQDPAQRISYRQAVAMIQRALKALPNQGLGLWV
GAQNVLGTLGLLGHVLSLCKTLRDAFEIGVRHQHTSGGIVVSSVDVVGDQVYVDVECRLPFAEVQVFAVEEFFASLLVYG
RALVGETFKPIAVEFMHAAPDYLDEYRRLLGPEVRFGCLHNRMLIDVQWLDVNLPNHHSLALRQAVKLLELEAAQVHQKL
DLIQAVERAIARDLSRGSHIEKIAADLNMSSRTLRRRLTEHSLTFEALLEQVRQARTMSLLANPDMPIERITEEVGYSDV
RSFRRAFKRWTGKSPSAWRSASI

Specific function: Activator Of The L-Rhamnose Operon. Rhar Putatively Autoregulates Its Synthesis. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 38420; Mature: 38420

Theoretical pI: Translated: 7.06; Mature: 7.06

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVKVQDPTFELALVSPFLLQTLAEVAANKGVEPQSLCRGLGFDFDDLQDPAQRISYRQA
CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHCCHHHHHHHHHH
VAMIQRALKALPNQGLGLWVGAQNVLGTLGLLGHVLSLCKTLRDAFEIGVRHQHTSGGIV
HHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEE
VSSVDVVGDQVYVDVECRLPFAEVQVFAVEEFFASLLVYGRALVGETFKPIAVEFMHAAP
EEEHHCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCH
DYLDEYRRLLGPEVRFGCLHNRMLIDVQWLDVNLPNHHSLALRQAVKLLELEAAQVHQKL
HHHHHHHHHHCCCHHHHHHCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH
DLIQAVERAIARDLSRGSHIEKIAADLNMSSRTLRRRLTEHSLTFEALLEQVRQARTMSL
HHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LANPDMPIERITEEVGYSDVRSFRRAFKRWTGKSPSAWRSASI
HCCCCCCHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MNVKVQDPTFELALVSPFLLQTLAEVAANKGVEPQSLCRGLGFDFDDLQDPAQRISYRQA
CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHCCHHHHHHHHHH
VAMIQRALKALPNQGLGLWVGAQNVLGTLGLLGHVLSLCKTLRDAFEIGVRHQHTSGGIV
HHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEE
VSSVDVVGDQVYVDVECRLPFAEVQVFAVEEFFASLLVYGRALVGETFKPIAVEFMHAAP
EEEHHCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCH
DYLDEYRRLLGPEVRFGCLHNRMLIDVQWLDVNLPNHHSLALRQAVKLLELEAAQVHQKL
HHHHHHHHHHCCCHHHHHHCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH
DLIQAVERAIARDLSRGSHIEKIAADLNMSSRTLRRRLTEHSLTFEALLEQVRQARTMSL
HHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LANPDMPIERITEEVGYSDVRSFRRAFKRWTGKSPSAWRSASI
HCCCCCCHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036; 12368430 [H]