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The map label for this gene is yhjC [C]

Identifier: 77459375

GI number: 77459375

Start: 3620751

End: 3621668

Strand: Reverse

Name: yhjC [C]

Synonym: Pfl01_3153

Alternate gene names: 77459375

Gene position: 3621668-3620751 (Counterclockwise)

Preceding gene: 77459379

Following gene: 77459374

Centisome position: 56.25

GC content: 63.29

Gene sequence:

>918_bases
ATGGACAAGCTGGGTGCACTGAAAATGTTCGTGGTCACCGCGCAGCTCGGCAGTTTCAGCCGCGCTGCCGAGCAACTGGG
CAAGACCCCGTCGGCCCTGACCAAAGCGGTCAATCACCTGGAATCCGAACTTGGGGCGCGGCTGTTCGAGCGCAGCACGC
GGCGGATTCTGCTGACCGAAATCGGCCGGCTGTATCTGGAAACCGCACGCCAGGTGCTGCAACGGCTGGACGAGGCCAGC
GAAGAAATCGAGCAGTTGCAGCATGGCCTGCGCGGCAGCCTGAAAATCACCGCACCGCTGGCCTACGGGCGGGCGTTTCT
TGATCAGGTGTGTGACGGCTTTTTGCAGCAATACCCGCAGATCAGCCTGCAAGTGGATTTGTGCGACGAATTCGTCAATC
TGCTGGAAAGCGGTTACGACCTGGCGTTGCGTGAAGGGCACGATGATTTGCCGGGGTTGATCGCCCGGGTGGTCGGCAGC
AATCGTCTGGCGCTGTGCGGTAGCCCCGAATACCTGGCGCGCAAGGGCTTGCCGGTCACGCCGCAAACCCTCGATCAGCA
TGAATGGCTGCTGTACCGGCATCCGTTGCTCAGTCGCGAATTCTGGTGGGCCGAACGCGACGGCCAGCGCCTGAGCCTGG
CGCAACCGACGGCGCCGCTGTTGCGCAGCGATAATTACGACCTGCTGCTGGCCAGCGCCCTGGCCGGGCGTGGCCTGCTG
CACACGCCGCTGTGGAGTGCCGCGCCGTATATCGCCGACGGGCGACTGGTGCGGGTCATGGCCGATTACGAGATCGACCC
GGACAGCTTCGGGCCACATATTCTGGCGGTGTACCCGAGCCATCGACGGGCGACGGCCAAGGTTGTGGCGTTCATTGATT
ACATCGCGGGGTTTCTCGCGGAGCGCGGTTTGAGCTGA

Upstream 100 bases:

>100_bases
ACATTTCCTTGTTATTGCGTCTGATGGCCAGATTAGTGGCTGCCAACGCCCGACAGAACGCCTCCCTCACGAAAAACGTT
TTTGCCTGAATGGAAAAAGC

Downstream 100 bases:

>100_bases
CTGGCGGTGCTTGTCAGGAAAATCCCACAAGAGTACAAATGTACTCCATGACGACTCTGACTCCCCGCCGTACCGCCATC
CTGACCTTTATCCGCGAACG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MDKLGALKMFVVTAQLGSFSRAAEQLGKTPSALTKAVNHLESELGARLFERSTRRILLTEIGRLYLETARQVLQRLDEAS
EEIEQLQHGLRGSLKITAPLAYGRAFLDQVCDGFLQQYPQISLQVDLCDEFVNLLESGYDLALREGHDDLPGLIARVVGS
NRLALCGSPEYLARKGLPVTPQTLDQHEWLLYRHPLLSREFWWAERDGQRLSLAQPTAPLLRSDNYDLLLASALAGRGLL
HTPLWSAAPYIADGRLVRVMADYEIDPDSFGPHILAVYPSHRRATAKVVAFIDYIAGFLAERGLS

Sequences:

>Translated_305_residues
MDKLGALKMFVVTAQLGSFSRAAEQLGKTPSALTKAVNHLESELGARLFERSTRRILLTEIGRLYLETARQVLQRLDEAS
EEIEQLQHGLRGSLKITAPLAYGRAFLDQVCDGFLQQYPQISLQVDLCDEFVNLLESGYDLALREGHDDLPGLIARVVGS
NRLALCGSPEYLARKGLPVTPQTLDQHEWLLYRHPLLSREFWWAERDGQRLSLAQPTAPLLRSDNYDLLLASALAGRGLL
HTPLWSAAPYIADGRLVRVMADYEIDPDSFGPHILAVYPSHRRATAKVVAFIDYIAGFLAERGLS
>Mature_305_residues
MDKLGALKMFVVTAQLGSFSRAAEQLGKTPSALTKAVNHLESELGARLFERSTRRILLTEIGRLYLETARQVLQRLDEAS
EEIEQLQHGLRGSLKITAPLAYGRAFLDQVCDGFLQQYPQISLQVDLCDEFVNLLESGYDLALREGHDDLPGLIARVVGS
NRLALCGSPEYLARKGLPVTPQTLDQHEWLLYRHPLLSREFWWAERDGQRLSLAQPTAPLLRSDNYDLLLASALAGRGLL
HTPLWSAAPYIADGRLVRVMADYEIDPDSFGPHILAVYPSHRRATAKVVAFIDYIAGFLAERGLS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=306, Percent_Identity=31.6993464052288, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI87081978, Length=302, Percent_Identity=30.1324503311258, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI1786401, Length=290, Percent_Identity=33.448275862069, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI1789440, Length=297, Percent_Identity=26.9360269360269, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI1787128, Length=294, Percent_Identity=27.891156462585, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1787589, Length=294, Percent_Identity=28.9115646258503, Blast_Score=117, Evalue=9e-28,
Organism=Escherichia coli, GI1789639, Length=304, Percent_Identity=27.6315789473684, Blast_Score=117, Evalue=9e-28,
Organism=Escherichia coli, GI1788706, Length=301, Percent_Identity=28.5714285714286, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1789173, Length=268, Percent_Identity=26.865671641791, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1787879, Length=146, Percent_Identity=32.8767123287671, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI145693105, Length=148, Percent_Identity=29.7297297297297, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI157672245, Length=119, Percent_Identity=34.453781512605, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1787601, Length=148, Percent_Identity=29.7297297297297, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1786448, Length=297, Percent_Identity=24.2424242424242, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786508, Length=125, Percent_Identity=32, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1786713, Length=143, Percent_Identity=32.1678321678322, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI87082024, Length=134, Percent_Identity=32.089552238806, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1787949, Length=91, Percent_Identity=36.2637362637363, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1788481, Length=201, Percent_Identity=27.8606965174129, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1789492, Length=93, Percent_Identity=38.7096774193548, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788748, Length=120, Percent_Identity=30.8333333333333, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34005; Mature: 34005

Theoretical pI: Translated: 6.32; Mature: 6.32

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKLGALKMFVVTAQLGSFSRAAEQLGKTPSALTKAVNHLESELGARLFERSTRRILLTE
CCCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGRLYLETARQVLQRLDEASEEIEQLQHGLRGSLKITAPLAYGRAFLDQVCDGFLQQYPQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHHHCCC
ISLQVDLCDEFVNLLESGYDLALREGHDDLPGLIARVVGSNRLALCGSPEYLARKGLPVT
CEEEHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHCCCCEEEECCHHHHHHCCCCCC
PQTLDQHEWLLYRHPLLSREFWWAERDGQRLSLAQPTAPLLRSDNYDLLLASALAGRGLL
CCCCCCCCHHHHHCCHHCCHHCCCCCCCCEEECCCCCHHHHCCCCCCHHHHHHHHCCCCC
HTPLWSAAPYIADGRLVRVMADYEIDPDSFGPHILAVYPSHRRATAKVVAFIDYIAGFLA
CCCHHHCCCCCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHH
ERGLS
HCCCC
>Mature Secondary Structure
MDKLGALKMFVVTAQLGSFSRAAEQLGKTPSALTKAVNHLESELGARLFERSTRRILLTE
CCCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGRLYLETARQVLQRLDEASEEIEQLQHGLRGSLKITAPLAYGRAFLDQVCDGFLQQYPQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHHHCCC
ISLQVDLCDEFVNLLESGYDLALREGHDDLPGLIARVVGSNRLALCGSPEYLARKGLPVT
CEEEHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHCCCCEEEECCHHHHHHCCCCCC
PQTLDQHEWLLYRHPLLSREFWWAERDGQRLSLAQPTAPLLRSDNYDLLLASALAGRGLL
CCCCCCCCHHHHHCCHHCCHHCCCCCCCCEEECCCCCHHHHCCCCCCHHHHHHHHCCCCC
HTPLWSAAPYIADGRLVRVMADYEIDPDSFGPHILAVYPSHRRATAKVVAFIDYIAGFLA
CCCHHHCCCCCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHH
ERGLS
HCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]