Click here to switch to the map view.

The map label for this gene is yahJ [H]

Identifier: 77459368

GI number: 77459368

Start: 3611629

End: 3612825

Strand: Direct

Name: yahJ [H]

Synonym: Pfl01_3146

Alternate gene names: 77459368

Gene position: 3611629-3612825 (Clockwise)

Preceding gene: 77459367

Following gene: 77459369

Centisome position: 56.1

GC content: 64.58

Gene sequence:

>1197_bases
ATGTCCCACCCCCGCTGGCTCAGAAACATCCGCCCCTACGGCGCCCCCGCCGAAGACCTGCTGATCGAAAACGGCAAGTT
CAGCCAACGCCGCCCGGCCTCCAATGCTCCACTGACCGCCACCGACATCGACGGCCAGAACCAGCTCCTGACCGCTCCGC
TGGTGGAAAGCCACGTCCACCTCGACAAGACCCTGTACGGCCAGCCCTGGCGCCCGAACAGCGCCGGCCCGACGCTCAAG
GACTACATCAGCAACGAGCGCCGTGTGCTGCGTGAAGTCAAGGCGCCGATCGCCGAACGCGCCGGCGCGCTGCTGGAAAA
CTGCATCGCCCGGGGTTCGCTGACCATGCGCTGCCACGTCGACATCGACCCGGAATTCGGCCTGCGCCACGTCGAGGCCA
TGCAACAACTGCGCGAAACCTACAACGACCTGATCGACCTGCAACTGGTGGTGTTCCCGCAAACCGGCCTGATCAGCCGC
CCCGGCACCGCCGAGCTGATGCGCGAAGCCATGGCCCTGGGCGTGGAGAACGTCGGCGGCCTCGACCCCTGCGGCATCGA
CAACGACCCGATCGCGCAACTGGATTTCGTGTTCAAACTGGCCCGCGAGTTCCAGCGTGGCGTCGACATTCACCTGCACG
ACAAAGGTGAACTGGGCCTGTGGCAGATCGCCCGGATCGCCGATTACACCGAGCGTTTCAACCTGCACAACCGGGTGATG
ATCAGCCATGCTTATTGCCTCGGCATGTTGCCTTGGAGCCAGGTCAAACCGGTCGCCGAACGCCTCGCTGCGCTGGGGAT
TTCGCTGATGAGTTCGGCGCCGGCCGACTGCGCGGTGCCGCCGTTTCTGGCGCTGCGTGACTCCGGCGTCAACGTCTGCC
TCGGTTCCGACGGCATTCGCGATGCGTGGTCGCCGATGGGTAATGGCGACATGCTGGAACGGGCAATGTTGCTGGCGTTT
CGTTTTGATCTGGGCAAAGACGATGAACTGGCGGCAGCCTTCGACGCGGCGACGGGCAACGGTGCCCGCGCATTGGGGAT
CAAGGATTACGGCTTCGCCATCGGCCGGCCGGCAGACTTTCTGCTGATGCCGGTCGAAACCCTCGGCGAAGCAGTAGTTT
CGCGCCCTGTGCGTCAGGTCTATCGCGGTGGCGAATTGATCGCGAGCGGCGGTCGTTTGCTGGGCAGCCGTCTGTGA

Upstream 100 bases:

>100_bases
TTCAGGTCGGCGTAGCTCTTCAATATCCCCCATTCGGTCCCCTCTCCCTCCGGGAGAGGGCTAGGGTGAGGGAAAAATTT
CAAAGAACACCGAGGTTCCC

Downstream 100 bases:

>100_bases
AACGGATCGGTCTGAAGGCTGGTTGCGTGGTCGGTTTCGACGGCACGCAACATGTACTGTGGCGCGACGGCGAAGTGGTG
TTCGCCGGTTCACGGATCGA

Product: cytosine deaminase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 398; Mature: 397

Protein sequence:

>398_residues
MSHPRWLRNIRPYGAPAEDLLIENGKFSQRRPASNAPLTATDIDGQNQLLTAPLVESHVHLDKTLYGQPWRPNSAGPTLK
DYISNERRVLREVKAPIAERAGALLENCIARGSLTMRCHVDIDPEFGLRHVEAMQQLRETYNDLIDLQLVVFPQTGLISR
PGTAELMREAMALGVENVGGLDPCGIDNDPIAQLDFVFKLAREFQRGVDIHLHDKGELGLWQIARIADYTERFNLHNRVM
ISHAYCLGMLPWSQVKPVAERLAALGISLMSSAPADCAVPPFLALRDSGVNVCLGSDGIRDAWSPMGNGDMLERAMLLAF
RFDLGKDDELAAAFDAATGNGARALGIKDYGFAIGRPADFLLMPVETLGEAVVSRPVRQVYRGGELIASGGRLLGSRL

Sequences:

>Translated_398_residues
MSHPRWLRNIRPYGAPAEDLLIENGKFSQRRPASNAPLTATDIDGQNQLLTAPLVESHVHLDKTLYGQPWRPNSAGPTLK
DYISNERRVLREVKAPIAERAGALLENCIARGSLTMRCHVDIDPEFGLRHVEAMQQLRETYNDLIDLQLVVFPQTGLISR
PGTAELMREAMALGVENVGGLDPCGIDNDPIAQLDFVFKLAREFQRGVDIHLHDKGELGLWQIARIADYTERFNLHNRVM
ISHAYCLGMLPWSQVKPVAERLAALGISLMSSAPADCAVPPFLALRDSGVNVCLGSDGIRDAWSPMGNGDMLERAMLLAF
RFDLGKDDELAAAFDAATGNGARALGIKDYGFAIGRPADFLLMPVETLGEAVVSRPVRQVYRGGELIASGGRLLGSRL
>Mature_397_residues
SHPRWLRNIRPYGAPAEDLLIENGKFSQRRPASNAPLTATDIDGQNQLLTAPLVESHVHLDKTLYGQPWRPNSAGPTLKD
YISNERRVLREVKAPIAERAGALLENCIARGSLTMRCHVDIDPEFGLRHVEAMQQLRETYNDLIDLQLVVFPQTGLISRP
GTAELMREAMALGVENVGGLDPCGIDNDPIAQLDFVFKLAREFQRGVDIHLHDKGELGLWQIARIADYTERFNLHNRVMI
SHAYCLGMLPWSQVKPVAERLAALGISLMSSAPADCAVPPFLALRDSGVNVCLGSDGIRDAWSPMGNGDMLERAMLLAFR
FDLGKDDELAAAFDAATGNGARALGIKDYGFAIGRPADFLLMPVETLGEAVVSRPVRQVYRGGELIASGGRLLGSRL

Specific function: Unknown

COG id: COG0402

COG function: function code FR; Cytosine deaminase and related metal-dependent hydrolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786517, Length=378, Percent_Identity=33.3333333333333, Blast_Score=189, Evalue=2e-49,
Organism=Escherichia coli, GI1786531, Length=388, Percent_Identity=29.1237113402062, Blast_Score=142, Evalue=4e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006311 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43668; Mature: 43536

Theoretical pI: Translated: 6.06; Mature: 6.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHPRWLRNIRPYGAPAEDLLIENGKFSQRRPASNAPLTATDIDGQNQLLTAPLVESHVH
CCCCHHHHHCCCCCCCHHHHEECCCCCCCCCCCCCCCEEEEECCCCCCEEECHHHHHHHH
LDKTLYGQPWRPNSAGPTLKDYISNERRVLREVKAPIAERAGALLENCIARGSLTMRCHV
HHHHHCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE
DIDPEFGLRHVEAMQQLRETYNDLIDLQLVVFPQTGLISRPGTAELMREAMALGVENVGG
ECCCCCCHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCHHHHHHHHHHHCHHCCCC
LDPCGIDNDPIAQLDFVFKLAREFQRGVDIHLHDKGELGLWQIARIADYTERFNLHNRVM
CCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE
ISHAYCLGMLPWSQVKPVAERLAALGISLMSSAPADCAVPPFLALRDSGVNVCLGSDGIR
EEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHEEECCCCEEEECCCCCH
DAWSPMGNGDMLERAMLLAFRFDLGKDDELAAAFDAATGNGARALGIKDYGFAIGRPADF
HHHCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCCCCCE
LLMPVETLGEAVVSRPVRQVYRGGELIASGGRLLGSRL
EEECHHHHHHHHHHHHHHHHHCCCCEEECCCHHHCCCC
>Mature Secondary Structure 
SHPRWLRNIRPYGAPAEDLLIENGKFSQRRPASNAPLTATDIDGQNQLLTAPLVESHVH
CCCHHHHHCCCCCCCHHHHEECCCCCCCCCCCCCCCEEEEECCCCCCEEECHHHHHHHH
LDKTLYGQPWRPNSAGPTLKDYISNERRVLREVKAPIAERAGALLENCIARGSLTMRCHV
HHHHHCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE
DIDPEFGLRHVEAMQQLRETYNDLIDLQLVVFPQTGLISRPGTAELMREAMALGVENVGG
ECCCCCCHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCHHHHHHHHHHHCHHCCCC
LDPCGIDNDPIAQLDFVFKLAREFQRGVDIHLHDKGELGLWQIARIADYTERFNLHNRVM
CCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE
ISHAYCLGMLPWSQVKPVAERLAALGISLMSSAPADCAVPPFLALRDSGVNVCLGSDGIR
EEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHEEECCCCEEEECCCCCH
DAWSPMGNGDMLERAMLLAFRFDLGKDDELAAAFDAATGNGARALGIKDYGFAIGRPADF
HHHCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCCCCCE
LLMPVETLGEAVVSRPVRQVYRGGELIASGGRLLGSRL
EEECHHHHHHHHHHHHHHHHHCCCCEEECCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]