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The map label for this gene is fimD [H]

Identifier: 77459266

GI number: 77459266

Start: 3484548

End: 3487034

Strand: Direct

Name: fimD [H]

Synonym: Pfl01_3044

Alternate gene names: 77459266

Gene position: 3484548-3487034 (Clockwise)

Preceding gene: 77459265

Following gene: 77459267

Centisome position: 54.12

GC content: 61.12

Gene sequence:

>2487_bases
ATGTTTTTTTTAAAGCGCGATGGATTGGCGCCGTTATCGGTTGCACTGGTCGTCAGCACAACTTGCCTGGCCGATGGCGA
AGAACAATTCAATACATCGTTTCTGCAAGGCGCGACGTCTGCCGTCGATCTGCAGACCCTGCTCGCCGGAAGCCAGGTTC
TCCCCGGCACTTATCGGGTCGACCTGTATGGCAATGACACCTTGGTCGGCCGTCGCGATATCGATTTTCGCCGCCAGCCC
GACAGCCACAAGGTCGAAGCCTGCCTGACGCTGGACATGCTCAAGCAACTGGGTGTGGATCTTGGCAAGCTGCAGGCCAG
CGGCAAGCTCGACGACGCCGCCGACACCTGCCTTGATCTGCCCGCGCTGATCGATCAGGCCACCGTGCGCTATGACGTGC
CGCGCCTGCGGTTGCTGGTCAGCGTGCCGCAAAGCGCCATGGAGCGTGGCCGCCGTGGTTATGTCGATCCAGCGCTGTGG
GACGAAGGCGTACCCGCAGCGTTCATCAACTATCAGGTGAGCAGCAACCGCAACAGCACCGACGCTGATACCACGTTTGC
CAATAACGTCGGCCTGCGCAACGGCATTAACCTCGGCAGCTGGCGCTTGCGCAACGAGTCCAATTTCAACAGCAGCACTG
GACGGCCAAGCACGTTCAAGAGCAATCGCAGCTATCTGCAGCACGACGTCACAGCGCTGAAGGGCCAGTTCAGTGCCGGC
GATATCTTCTCCGACGCCGACCTGTTCGACAGCGTGCGCTATCGCGGCCTGAAACTGGCCTCCGACGATGGCATGCGTGC
CGATAGCGAGCGCGGCTATGCGCCGGTGATTCGCGGTATCGCGCAATCAAGCGCTACCGTGGAGATTCGCCAGAACAATT
ACATTCTGTACACCGCCAACGTGCCGCCGGGGCCGTTCGAAATCAGCGACATCTATCCCAGCGGCTCCAACGGCGATCTG
GAAATCACTGTAATCGAAGCCGACGGTCGGCGCCGGGTGACGGTGCAGGCGTTTTCCAGCCTGCCGATCATGGTTCGCGA
AGGGCAACTCAAGTACAGCATCTCGGCGGGCCGCTACAACAGCAATAGCGATGATCAGCAATCGCCGGAGTTCGTCAGCA
GCACGGTGGCCTACGGGGTCAGCAGCAACTTGTCGGCGATCGTGGGCACCCAGGCCAGCGAAGATTTCCAGGCGTTTTCC
GTTGGCGCCGGGCGCAACACCGCGATCGGTGCGATCTCGCTGGACCTGACCCACTCCAGCAGCCGCACCTTTGGCCAGAC
CGTCAAGGGCAACAGCCTGCGCGCGTTGTATGCCAAGACGTTCACCGGCACCGACACCAACTTCACCCTCGCCGCTTACC
GCTATTCGACCGAGGGCTATCGAACCTTCAGCGAACATGTCGAGGAACTGAGCAGCGAGGGCCAGAAGCGCACCGGTAAT
TCGAAAACCCGCACCGACCTGACCGTCAACCAGAGCCTGGGGCGCAACCAGCAGTTCGGTAGCATCTACCTTAACGCCAG
CGACCAGCGTTATTGGGGGCGCGGCGGTTCGCAGAGCCTGTCTGCCGGCTACAGCAATTATTGGGGCGAGGTCAGCTACA
ACCTTAGCGCGACTTACACCAAGGATGTCGGCAACTATGGGCCGGCCAACAACGACACTTTGTTCAACCTCTCTGTGTCG
TTTCCGCTGGGCTCGAAACCCCGGGCGCCGAGGGCATTCGTTTCGGCCAGTTCGCAGAAGGGCAACAGCAGCACGCAGGT
CGGTATCAATGGCTATCTGTCCGAAGACAGCGACACCTATTACTCGGTACAGGGCAGCAACAGTCGCACTGGCGGCAGTA
CGGGTTCGGCCAACCTCAGCACGCGAACCTCAATGATGGACATCAGTGCCGGTTACAGCCAGGGCCGTGGCTACAACTCG
CAGAATCTCAACGTCGCCGGTTCGATTGTCGGGCACGCGGGCGGCATCAACCTCGGGCAGACCGTCGGTGAGACGTTCGC
GCTGGCACAGGTCGAGGGCGTTGAAGGCGTGAAGATCGCCAGCTTCTCCGGGGCGAAAACCGCTGGCAACGGTTATGCGG
TGGTGTCCAACGCGCAGCCGTATCGGGTCAACTGGATCAGTCTTGACACCCGAGATCTGGGCGGTGATTTCGAAATTGAA
AACGCCACCCAGCAAGTGGTACCGCGCCGTGGTGCCGTGGTGCTGGCGCGCTATGCCAGCAAGACCGGGCGTCGGGTGCA
ATTCGCCCTGTTCGATGCGCAGCACCAGCCAATCCCGTTTGGGGCGACACTGGAAGACGCCGCCGGCAAGCAACTGGCGA
TCTCCGACCCAAGTGGCAAGGCACTGGCGCTGGTCGCGGATGACGCCGGCACCCTGACCATCAACTGGCAAGGCCAGCGC
TGCGAGGCATCGTATGCTCTGCCCGAGCGGGACAAGGCGCTGAATTACGAGCGCGCATCCTTGGTATGTCGCCCGCATCA
AAACTAG

Upstream 100 bases:

>100_bases
AAAGAATCGCCATAACTCGCGTGCCGCTTTATCAGCCGCACTTTCACTGTATTTCTCTTCGCTCCGTTAGTTCGTATCGG
AGGTGATATAGGGTTCCTGC

Downstream 100 bases:

>100_bases
GAGCGAGATTGCTCGCGAAGTGCTGTCAGCCGCACCCTCTCTGCTGGCTGCAAGCCTGCAAGCGCTTCGTAGTTCATTAA
ACGATACCGAAACGCCATCA

Product: fimbrial biogenesis outer membrane usher protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 828; Mature: 828

Protein sequence:

>828_residues
MFFLKRDGLAPLSVALVVSTTCLADGEEQFNTSFLQGATSAVDLQTLLAGSQVLPGTYRVDLYGNDTLVGRRDIDFRRQP
DSHKVEACLTLDMLKQLGVDLGKLQASGKLDDAADTCLDLPALIDQATVRYDVPRLRLLVSVPQSAMERGRRGYVDPALW
DEGVPAAFINYQVSSNRNSTDADTTFANNVGLRNGINLGSWRLRNESNFNSSTGRPSTFKSNRSYLQHDVTALKGQFSAG
DIFSDADLFDSVRYRGLKLASDDGMRADSERGYAPVIRGIAQSSATVEIRQNNYILYTANVPPGPFEISDIYPSGSNGDL
EITVIEADGRRRVTVQAFSSLPIMVREGQLKYSISAGRYNSNSDDQQSPEFVSSTVAYGVSSNLSAIVGTQASEDFQAFS
VGAGRNTAIGAISLDLTHSSSRTFGQTVKGNSLRALYAKTFTGTDTNFTLAAYRYSTEGYRTFSEHVEELSSEGQKRTGN
SKTRTDLTVNQSLGRNQQFGSIYLNASDQRYWGRGGSQSLSAGYSNYWGEVSYNLSATYTKDVGNYGPANNDTLFNLSVS
FPLGSKPRAPRAFVSASSQKGNSSTQVGINGYLSEDSDTYYSVQGSNSRTGGSTGSANLSTRTSMMDISAGYSQGRGYNS
QNLNVAGSIVGHAGGINLGQTVGETFALAQVEGVEGVKIASFSGAKTAGNGYAVVSNAQPYRVNWISLDTRDLGGDFEIE
NATQQVVPRRGAVVLARYASKTGRRVQFALFDAQHQPIPFGATLEDAAGKQLAISDPSGKALALVADDAGTLTINWQGQR
CEASYALPERDKALNYERASLVCRPHQN

Sequences:

>Translated_828_residues
MFFLKRDGLAPLSVALVVSTTCLADGEEQFNTSFLQGATSAVDLQTLLAGSQVLPGTYRVDLYGNDTLVGRRDIDFRRQP
DSHKVEACLTLDMLKQLGVDLGKLQASGKLDDAADTCLDLPALIDQATVRYDVPRLRLLVSVPQSAMERGRRGYVDPALW
DEGVPAAFINYQVSSNRNSTDADTTFANNVGLRNGINLGSWRLRNESNFNSSTGRPSTFKSNRSYLQHDVTALKGQFSAG
DIFSDADLFDSVRYRGLKLASDDGMRADSERGYAPVIRGIAQSSATVEIRQNNYILYTANVPPGPFEISDIYPSGSNGDL
EITVIEADGRRRVTVQAFSSLPIMVREGQLKYSISAGRYNSNSDDQQSPEFVSSTVAYGVSSNLSAIVGTQASEDFQAFS
VGAGRNTAIGAISLDLTHSSSRTFGQTVKGNSLRALYAKTFTGTDTNFTLAAYRYSTEGYRTFSEHVEELSSEGQKRTGN
SKTRTDLTVNQSLGRNQQFGSIYLNASDQRYWGRGGSQSLSAGYSNYWGEVSYNLSATYTKDVGNYGPANNDTLFNLSVS
FPLGSKPRAPRAFVSASSQKGNSSTQVGINGYLSEDSDTYYSVQGSNSRTGGSTGSANLSTRTSMMDISAGYSQGRGYNS
QNLNVAGSIVGHAGGINLGQTVGETFALAQVEGVEGVKIASFSGAKTAGNGYAVVSNAQPYRVNWISLDTRDLGGDFEIE
NATQQVVPRRGAVVLARYASKTGRRVQFALFDAQHQPIPFGATLEDAAGKQLAISDPSGKALALVADDAGTLTINWQGQR
CEASYALPERDKALNYERASLVCRPHQN
>Mature_828_residues
MFFLKRDGLAPLSVALVVSTTCLADGEEQFNTSFLQGATSAVDLQTLLAGSQVLPGTYRVDLYGNDTLVGRRDIDFRRQP
DSHKVEACLTLDMLKQLGVDLGKLQASGKLDDAADTCLDLPALIDQATVRYDVPRLRLLVSVPQSAMERGRRGYVDPALW
DEGVPAAFINYQVSSNRNSTDADTTFANNVGLRNGINLGSWRLRNESNFNSSTGRPSTFKSNRSYLQHDVTALKGQFSAG
DIFSDADLFDSVRYRGLKLASDDGMRADSERGYAPVIRGIAQSSATVEIRQNNYILYTANVPPGPFEISDIYPSGSNGDL
EITVIEADGRRRVTVQAFSSLPIMVREGQLKYSISAGRYNSNSDDQQSPEFVSSTVAYGVSSNLSAIVGTQASEDFQAFS
VGAGRNTAIGAISLDLTHSSSRTFGQTVKGNSLRALYAKTFTGTDTNFTLAAYRYSTEGYRTFSEHVEELSSEGQKRTGN
SKTRTDLTVNQSLGRNQQFGSIYLNASDQRYWGRGGSQSLSAGYSNYWGEVSYNLSATYTKDVGNYGPANNDTLFNLSVS
FPLGSKPRAPRAFVSASSQKGNSSTQVGINGYLSEDSDTYYSVQGSNSRTGGSTGSANLSTRTSMMDISAGYSQGRGYNS
QNLNVAGSIVGHAGGINLGQTVGETFALAQVEGVEGVKIASFSGAKTAGNGYAVVSNAQPYRVNWISLDTRDLGGDFEIE
NATQQVVPRRGAVVLARYASKTGRRVQFALFDAQHQPIPFGATLEDAAGKQLAISDPSGKALALVADDAGTLTINWQGQR
CEASYALPERDKALNYERASLVCRPHQN

Specific function: Involved in the export and assembly of fimA fimbrial subunits across the outer membrane [H]

COG id: COG3188

COG function: function code NU; P pilus assembly protein, porin PapC

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI1790772, Length=873, Percent_Identity=32.4169530355097, Blast_Score=456, Evalue=1e-129,
Organism=Escherichia coli, GI1787172, Length=855, Percent_Identity=35.7894736842105, Blast_Score=454, Evalue=1e-128,
Organism=Escherichia coli, GI1786744, Length=852, Percent_Identity=32.981220657277, Blast_Score=437, Evalue=1e-123,
Organism=Escherichia coli, GI1789533, Length=838, Percent_Identity=32.9355608591885, Blast_Score=422, Evalue=1e-119,
Organism=Escherichia coli, GI1788427, Length=799, Percent_Identity=31.0387984981227, Blast_Score=367, Evalue=1e-102,
Organism=Escherichia coli, GI1786332, Length=845, Percent_Identity=30.887573964497, Blast_Score=359, Evalue=1e-100,
Organism=Escherichia coli, GI87081778, Length=820, Percent_Identity=26.4634146341463, Blast_Score=207, Evalue=2e-54,
Organism=Escherichia coli, GI1789610, Length=787, Percent_Identity=24.5235069885642, Blast_Score=149, Evalue=6e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 89172; Mature: 89172

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: PS01151 FIMBRIAL_USHER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFFLKRDGLAPLSVALVVSTTCLADGEEQFNTSFLQGATSAVDLQTLLAGSQVLPGTYRV
CEEEECCCCCHHEEEEEEEHHHHCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCEEEE
DLYGNDTLVGRRDIDFRRQPDSHKVEACLTLDMLKQLGVDLGKLQASGKLDDAADTCLDL
EEECCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHH
PALIDQATVRYDVPRLRLLVSVPQSAMERGRRGYVDPALWDEGVPAAFINYQVSSNRNST
HHHHHCCCEEECCCCEEEEEECCHHHHHCCCCCCCCHHHCCCCCCEEEEEEEECCCCCCC
DADTTFANNVGLRNGINLGSWRLRNESNFNSSTGRPSTFKSNRSYLQHDVTALKGQFSAG
CCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC
DIFSDADLFDSVRYRGLKLASDDGMRADSERGYAPVIRGIAQSSATVEIRQNNYILYTAN
CCCCCHHHHHHHHHCCEEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCEEEEECC
VPPGPFEISDIYPSGSNGDLEITVIEADGRRRVTVQAFSSLPIMVREGQLKYSISAGRYN
CCCCCEEEEEECCCCCCCCEEEEEEECCCCEEEEEEECCCCCEEEECCCEEEEEECCCCC
SNSDDQQSPEFVSSTVAYGVSSNLSAIVGTQASEDFQAFSVGAGRNTAIGAISLDLTHSS
CCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEECCCCCCEEEEEEEEEECCC
SRTFGQTVKGNSLRALYAKTFTGTDTNFTLAAYRYSTEGYRTFSEHVEELSSEGQKRTGN
CCCCCCCCCCCCEEEEEEEEECCCCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCC
SKTRTDLTVNQSLGRNQQFGSIYLNASDQRYWGRGGSQSLSAGYSNYWGEVSYNLSATYT
CCCEEEEEEECCCCCCCCCCEEEEECCCCEECCCCCCCCCCCCCCCCCCEEEEEEEEEEE
KDVGNYGPANNDTLFNLSVSFPLGSKPRAPRAFVSASSQKGNSSTQVGINGYLSEDSDTY
CCCCCCCCCCCCEEEEEEEECCCCCCCCCCHHHEECCCCCCCCCEEEEEEEEECCCCCCE
YSVQGSNSRTGGSTGSANLSTRTSMMDISAGYSQGRGYNSQNLNVAGSIVGHAGGINLGQ
EEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCHH
TVGETFALAQVEGVEGVKIASFSGAKTAGNGYAVVSNAQPYRVNWISLDTRDLGGDFEIE
HHCCEEEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCEEEEEEEEEHHCCCCCEEEC
NATQQVVPRRGAVVLARYASKTGRRVQFALFDAQHQPIPFGATLEDAAGKQLAISDPSGK
CCHHHHCCCCCCEEEEEECCCCCCEEEEEEECCCCCCCCCCCCHHHCCCCEEEEECCCCC
ALALVADDAGTLTINWQGQRCEASYALPERDKALNYERASLVCRPHQN
EEEEEECCCCEEEEEECCCEEEECCCCCCCHHHCCCCCCEEEECCCCC
>Mature Secondary Structure
MFFLKRDGLAPLSVALVVSTTCLADGEEQFNTSFLQGATSAVDLQTLLAGSQVLPGTYRV
CEEEECCCCCHHEEEEEEEHHHHCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCEEEE
DLYGNDTLVGRRDIDFRRQPDSHKVEACLTLDMLKQLGVDLGKLQASGKLDDAADTCLDL
EEECCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHH
PALIDQATVRYDVPRLRLLVSVPQSAMERGRRGYVDPALWDEGVPAAFINYQVSSNRNST
HHHHHCCCEEECCCCEEEEEECCHHHHHCCCCCCCCHHHCCCCCCEEEEEEEECCCCCCC
DADTTFANNVGLRNGINLGSWRLRNESNFNSSTGRPSTFKSNRSYLQHDVTALKGQFSAG
CCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC
DIFSDADLFDSVRYRGLKLASDDGMRADSERGYAPVIRGIAQSSATVEIRQNNYILYTAN
CCCCCHHHHHHHHHCCEEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCEEEEECC
VPPGPFEISDIYPSGSNGDLEITVIEADGRRRVTVQAFSSLPIMVREGQLKYSISAGRYN
CCCCCEEEEEECCCCCCCCEEEEEEECCCCEEEEEEECCCCCEEEECCCEEEEEECCCCC
SNSDDQQSPEFVSSTVAYGVSSNLSAIVGTQASEDFQAFSVGAGRNTAIGAISLDLTHSS
CCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEECCCCCCEEEEEEEEEECCC
SRTFGQTVKGNSLRALYAKTFTGTDTNFTLAAYRYSTEGYRTFSEHVEELSSEGQKRTGN
CCCCCCCCCCCCEEEEEEEEECCCCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCC
SKTRTDLTVNQSLGRNQQFGSIYLNASDQRYWGRGGSQSLSAGYSNYWGEVSYNLSATYT
CCCEEEEEEECCCCCCCCCCEEEEECCCCEECCCCCCCCCCCCCCCCCCEEEEEEEEEEE
KDVGNYGPANNDTLFNLSVSFPLGSKPRAPRAFVSASSQKGNSSTQVGINGYLSEDSDTY
CCCCCCCCCCCCEEEEEEEECCCCCCCCCCHHHEECCCCCCCCCEEEEEEEEECCCCCCE
YSVQGSNSRTGGSTGSANLSTRTSMMDISAGYSQGRGYNSQNLNVAGSIVGHAGGINLGQ
EEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCHH
TVGETFALAQVEGVEGVKIASFSGAKTAGNGYAVVSNAQPYRVNWISLDTRDLGGDFEIE
HHCCEEEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCEEEEEEEEEHHCCCCCEEEC
NATQQVVPRRGAVVLARYASKTGRRVQFALFDAQHQPIPFGATLEDAAGKQLAISDPSGK
CCHHHHCCCCCCEEEEEECCCCCCEEEEEEECCCCCCCCCCCCHHHCCCCEEEEECCCCC
ALALVADDAGTLTINWQGQRCEASYALPERDKALNYERASLVCRPHQN
EEEEEECCCCEEEEEECCCEEEECCCCCCCHHHCCCCCCEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11677609 [H]