| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is 77459113
Identifier: 77459113
GI number: 77459113
Start: 3328076
End: 3329455
Strand: Direct
Name: 77459113
Synonym: Pfl01_2888
Alternate gene names: NA
Gene position: 3328076-3329455 (Clockwise)
Preceding gene: 77459112
Following gene: 77459114
Centisome position: 51.69
GC content: 53.84
Gene sequence:
>1380_bases ATGAGCAGTCCGTTTACGGTTTTTCCCGCCAAAATTGTTGGGGGAGTCAAGAGCCCCATTTACTACCCCGACCCCAACGT GAAACCACACTACGGCGTACCGCTCGCACTCTTCTCCGTGCCCGGCGATTTGCTGCGCCTTGAGATTATTCCCTGGGACA AGCAGGCGGTGAACGATAGTGGATGGTTGATCATCAACAAGGGCGCTCCCCTATTCATGAAAACCATCCAAACGGGGGAA GACGGCAAGACTTTCTTCCATGACGTGCCTAAAGCCTTTTTAAATGATGGCCTCAACACGCTGGTGGTGCGGGCCACTAA CCAAGTCCAGCCCGGAGGAACGGACTCAATTGATCTGTTATCACTTGTCCACATTCCGCGTCCTGGGGGAGAAGTGGTGG GTTCCGGGAACAATCCGAATCTGACTCTTTCAGTATCCCACTTGAGCGTAGGTCCAACAGAGGCTGCAAACGGCGTCGAT GTCACACTGCGCTACCCCTACATGCGAGAAGGCGACGACATCAACCTTGACCTGGACGGTCGGGCCTATCCGCATACAGT GACCGCAGCACAGGCACCACTTGGCCAAGTGGTAATTAAGCTCTTCGCCAAGGATTTTTGGCAGGACAATAAACAGTTCG CCATTCGTTTCCGGGTGACTGACAGTCTCGGCAACACATCGGGCCCGCTGGCGATCTGGTCGGCAACCACCAACATCGAT GTGCAGGTGAAACAGCCTGCCCTCGATCTTATCCCCCCCAAAGTACTGGAAGCGAAGGAAGCGAACGGTACGCAATTGAA TTTCGAGAAGGATTTTTATCAGAACACCCACGCCACCGTAGAAGTGCAATACACGGGTTCCAACGCAGGACAGAAAGTCA GAGTCTATTGCATCGGACGCGCGGAAACTTACGGCAGCGAGACCCAGACAGTTTCTTCAGCCGGGCAAAAATTGACGTTT TTGATCCCGCGTCGAGTGATCGTCGACTCCATCGCCAACAAGATCCAATTCTCTTACACCGTTATTCTGCCGAACACAGT ACCCGAGCGTCCCTCCAAAGACCTCGACGTCAACATCACCCGACAGAAGCACATCTGTGGCGTACCCACGATCAACGCTG CCAGAGACAACCTCAGGCTTTACGCCCCAAATCCCCTCGAAGCGCAATACACGGTACGTATTTCATTGACCATCGATGGT CAGACACGTCTCGACAGCCAAGAGATCCCTTACGTCCAGGGTTCCTACATGGACTTCGGGGTTCCGCGAGGCTGGGTGAG CAGCAACCCAGGCAAAACCGGCTATTTCAACTATTCCATCAGGCGTACGGGTAGCACGGACCTCATCATTTTTTCGCCGT ATGTGAAGGTCCTCCTCTAG
Upstream 100 bases:
>100_bases CTGTCAGATCTGACAGTAGCAAGGCACGGACGCGCGGTGTTTGATGACGGTACCCGTTGCAGCTCACGCAACCACTATCT CGAATACCAGGGCGCAGAAG
Downstream 100 bases:
>100_bases GAAGACTCATCTTCAGCAATAACGCCAATCACTCACCGGCCCGTTAACAGGGGCCGAGGGTCCGGTCGTGCACAAGATAA TCAACTTACTACTTTTGGCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 459; Mature: 458
Protein sequence:
>459_residues MSSPFTVFPAKIVGGVKSPIYYPDPNVKPHYGVPLALFSVPGDLLRLEIIPWDKQAVNDSGWLIINKGAPLFMKTIQTGE DGKTFFHDVPKAFLNDGLNTLVVRATNQVQPGGTDSIDLLSLVHIPRPGGEVVGSGNNPNLTLSVSHLSVGPTEAANGVD VTLRYPYMREGDDINLDLDGRAYPHTVTAAQAPLGQVVIKLFAKDFWQDNKQFAIRFRVTDSLGNTSGPLAIWSATTNID VQVKQPALDLIPPKVLEAKEANGTQLNFEKDFYQNTHATVEVQYTGSNAGQKVRVYCIGRAETYGSETQTVSSAGQKLTF LIPRRVIVDSIANKIQFSYTVILPNTVPERPSKDLDVNITRQKHICGVPTINAARDNLRLYAPNPLEAQYTVRISLTIDG QTRLDSQEIPYVQGSYMDFGVPRGWVSSNPGKTGYFNYSIRRTGSTDLIIFSPYVKVLL
Sequences:
>Translated_459_residues MSSPFTVFPAKIVGGVKSPIYYPDPNVKPHYGVPLALFSVPGDLLRLEIIPWDKQAVNDSGWLIINKGAPLFMKTIQTGE DGKTFFHDVPKAFLNDGLNTLVVRATNQVQPGGTDSIDLLSLVHIPRPGGEVVGSGNNPNLTLSVSHLSVGPTEAANGVD VTLRYPYMREGDDINLDLDGRAYPHTVTAAQAPLGQVVIKLFAKDFWQDNKQFAIRFRVTDSLGNTSGPLAIWSATTNID VQVKQPALDLIPPKVLEAKEANGTQLNFEKDFYQNTHATVEVQYTGSNAGQKVRVYCIGRAETYGSETQTVSSAGQKLTF LIPRRVIVDSIANKIQFSYTVILPNTVPERPSKDLDVNITRQKHICGVPTINAARDNLRLYAPNPLEAQYTVRISLTIDG QTRLDSQEIPYVQGSYMDFGVPRGWVSSNPGKTGYFNYSIRRTGSTDLIIFSPYVKVLL >Mature_458_residues SSPFTVFPAKIVGGVKSPIYYPDPNVKPHYGVPLALFSVPGDLLRLEIIPWDKQAVNDSGWLIINKGAPLFMKTIQTGED GKTFFHDVPKAFLNDGLNTLVVRATNQVQPGGTDSIDLLSLVHIPRPGGEVVGSGNNPNLTLSVSHLSVGPTEAANGVDV TLRYPYMREGDDINLDLDGRAYPHTVTAAQAPLGQVVIKLFAKDFWQDNKQFAIRFRVTDSLGNTSGPLAIWSATTNIDV QVKQPALDLIPPKVLEAKEANGTQLNFEKDFYQNTHATVEVQYTGSNAGQKVRVYCIGRAETYGSETQTVSSAGQKLTFL IPRRVIVDSIANKIQFSYTVILPNTVPERPSKDLDVNITRQKHICGVPTINAARDNLRLYAPNPLEAQYTVRISLTIDGQ TRLDSQEIPYVQGSYMDFGVPRGWVSSNPGKTGYFNYSIRRTGSTDLIIFSPYVKVLL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 50423; Mature: 50292
Theoretical pI: Translated: 8.16; Mature: 8.16
Prosite motif: PS00430 TONB_DEPENDENT_REC_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSPFTVFPAKIVGGVKSPIYYPDPNVKPHYGVPLALFSVPGDLLRLEIIPWDKQAVNDS CCCCCEEECHHHHCCCCCCEECCCCCCCCCCCCCEEEEECCCCEEEEEEECCCHHHCCCC GWLIINKGAPLFMKTIQTGEDGKTFFHDVPKAFLNDGLNTLVVRATNQVQPGGTDSIDLL CEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCEEEE SLVHIPRPGGEVVGSGNNPNLTLSVSHLSVGPTEAANGVDVTLRYPYMREGDDINLDLDG EEEECCCCCCCEEECCCCCCEEEEEEEEECCCCCCCCCEEEEEECCCCCCCCEEEEEECC RAYPHTVTAAQAPLGQVVIKLFAKDFWQDNKQFAIRFRVTDSLGNTSGPLAIWSATTNID CCCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCEEEEEECCCEE VQVKQPALDLIPPKVLEAKEANGTQLNFEKDFYQNTHATVEVQYTGSNAGQKVRVYCIGR EEEECCCCCCCCCHHCCCCCCCCCEEEECHHHHCCCCEEEEEEECCCCCCCEEEEEEEEC AETYGSETQTVSSAGQKLTFLIPRRVIVDSIANKIQFSYTVILPNTVPERPSKDLDVNIT CCCCCCCHHHHHHCCCEEEEEECHHHHHHHHHHHEEEEEEEEECCCCCCCCCCCCEEEEE RQKHICGVPTINAARDNLRLYAPNPLEAQYTVRISLTIDGQTRLDSQEIPYVQGSYMDFG CCCEECCCCCCCCCCCCCEEECCCCCCEEEEEEEEEEECCCCCCCCCCCCEEECCCEECC VPRGWVSSNPGKTGYFNYSIRRTGSTDLIIFSPYVKVLL CCCCCCCCCCCCCEEEEEEEEECCCCCEEEECCHHHHCC >Mature Secondary Structure SSPFTVFPAKIVGGVKSPIYYPDPNVKPHYGVPLALFSVPGDLLRLEIIPWDKQAVNDS CCCCEEECHHHHCCCCCCEECCCCCCCCCCCCCEEEEECCCCEEEEEEECCCHHHCCCC GWLIINKGAPLFMKTIQTGEDGKTFFHDVPKAFLNDGLNTLVVRATNQVQPGGTDSIDLL CEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCEEEE SLVHIPRPGGEVVGSGNNPNLTLSVSHLSVGPTEAANGVDVTLRYPYMREGDDINLDLDG EEEECCCCCCCEEECCCCCCEEEEEEEEECCCCCCCCCEEEEEECCCCCCCCEEEEEECC RAYPHTVTAAQAPLGQVVIKLFAKDFWQDNKQFAIRFRVTDSLGNTSGPLAIWSATTNID CCCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCEEEEEECCCEE VQVKQPALDLIPPKVLEAKEANGTQLNFEKDFYQNTHATVEVQYTGSNAGQKVRVYCIGR EEEECCCCCCCCCHHCCCCCCCCCEEEECHHHHCCCCEEEEEEECCCCCCCEEEEEEEEC AETYGSETQTVSSAGQKLTFLIPRRVIVDSIANKIQFSYTVILPNTVPERPSKDLDVNIT CCCCCCCHHHHHHCCCEEEEEECHHHHHHHHHHHEEEEEEEEECCCCCCCCCCCCEEEEE RQKHICGVPTINAARDNLRLYAPNPLEAQYTVRISLTIDGQTRLDSQEIPYVQGSYMDFG CCCEECCCCCCCCCCCCCEEECCCCCCEEEEEEEEEEECCCCCCCCCCCCEEECCCEECC VPRGWVSSNPGKTGYFNYSIRRTGSTDLIIFSPYVKVLL CCCCCCCCCCCCCEEEEEEEEECCCCCEEEECCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA