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The map label for this gene is ycdO [H]

Identifier: 77459098

GI number: 77459098

Start: 3314294

End: 3315493

Strand: Direct

Name: ycdO [H]

Synonym: Pfl01_2873

Alternate gene names: 77459098

Gene position: 3314294-3315493 (Clockwise)

Preceding gene: 77459097

Following gene: 77459099

Centisome position: 51.48

GC content: 64.5

Gene sequence:

>1200_bases
ATGTCAAAGCCTAATACTCCTCAGGCCTCGCCTCCCCGCGCCTTGCGCTGGGCGGTGGCCGGTTCGGTGGTCGTGATGAT
CGCCGCCGGTGGCCTGTTCTACTACGCCTCGAAACTGGCCGCCGCCAAACGTCAGCACAACCGTGACGAAGTGGTGGTCA
ACATTCATCCGCACAGCTGCGAACCGAACACCCTGACGGTGCCGGCCGGTCGCGCTAGTTTCCGCATCGTCAATCGCTCC
GACCGGGCGGTGGAGTGGGAAATCCTCGACGGCGTGCTGGTGATCGAAGAGCGCGAGAACATCGCGCCGGGCCTGAGCCA
GGTGATCAACGCCAACCTGCAACCCGGCGACTACGCTATCACCTGTGGCCTGCTGAGCAACCCGCGCGGCACCCTGCACG
TGACGCCGACCGCCGCCTCGGATGCCGCCGCCAAGGCCAAGCCGTCGATGGTTGCCTTCGTCGGGCCGCTGTCGGAGTTT
CGCGTCTACCTGGCCAGCCAGGGCAGCGCGCTGATCAAGGCCGTGACGGCGCTGAATCAAGCCATCGACAGCGGCGATCT
GGCCCAGGCCCAGGCGTTGTATTTGCCGGCCCGCGCGGCGTATCAGCGTCTGGCCCCCGCCGCACAACGCCTGGCGGAAC
TGGACAACAGCATCAACGCCCGCGCCGATTACTTCGAAAAACGCGAGCAGGATCCGGCCTTCGTCGGTTTCCACCGTCTC
GAATACGCGCTGTTCCAGCAACGCAAACTCGACGGGCTGACACCGATTGCCCAAGGCTTGCTCGACAACGTCACCACGCT
GAAACAACAGCTGCTTGTTCAGTCGCTGCCGCCGGAGCAACTGGTGGAAATCGTCGTGCGCAACCTCAACACCCTCGCCG
ACGTGCGCGCCGCCAGCGGCGAAGAGGAACGCTACAGTCACAGTGATCTCAACGGCTTCGCGGCCAATCAGGAAACCGCG
CGCAAAGTCGTCGAACTGCTGCGCCCGCTGCTGAGCAAATCCGCCGCCGACCTGCTGCCGAGAATCGACGGCGCGCTGGC
TGATTTCGATACCACGCTGGACGGTTTCAGGGTCAAGGACGGCTACGCCAGTTACGACACCGTCAACGGTGAACAACGCA
AGCAGATCGCCGACAAGGCCAAGGCCCTGGCCGACGCCCTCGACGCCATTGATCCCGCCCTCGGCCTCTCCGGCCTGTAA

Upstream 100 bases:

>100_bases
CGTACCTGATTTATCTGCTGGTGGCGCTGGTCATGTTCTTCATGCCGGCACCCAAGCCTGCTGCCCAATCGTCTTCCGTT
TCCAGCCAATAAGGGCCTTC

Downstream 100 bases:

>100_bases
GCAGAAGACGACTACCGATGAACGATTCCGAACACTTCAACCTGCAACGTCGCCGCGTACTGATGGGCATGGGCGCCGCC
GGTGTCGCACTGGCCGGCAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 399; Mature: 398

Protein sequence:

>399_residues
MSKPNTPQASPPRALRWAVAGSVVVMIAAGGLFYYASKLAAAKRQHNRDEVVVNIHPHSCEPNTLTVPAGRASFRIVNRS
DRAVEWEILDGVLVIEERENIAPGLSQVINANLQPGDYAITCGLLSNPRGTLHVTPTAASDAAAKAKPSMVAFVGPLSEF
RVYLASQGSALIKAVTALNQAIDSGDLAQAQALYLPARAAYQRLAPAAQRLAELDNSINARADYFEKREQDPAFVGFHRL
EYALFQQRKLDGLTPIAQGLLDNVTTLKQQLLVQSLPPEQLVEIVVRNLNTLADVRAASGEEERYSHSDLNGFAANQETA
RKVVELLRPLLSKSAADLLPRIDGALADFDTTLDGFRVKDGYASYDTVNGEQRKQIADKAKALADALDAIDPALGLSGL

Sequences:

>Translated_399_residues
MSKPNTPQASPPRALRWAVAGSVVVMIAAGGLFYYASKLAAAKRQHNRDEVVVNIHPHSCEPNTLTVPAGRASFRIVNRS
DRAVEWEILDGVLVIEERENIAPGLSQVINANLQPGDYAITCGLLSNPRGTLHVTPTAASDAAAKAKPSMVAFVGPLSEF
RVYLASQGSALIKAVTALNQAIDSGDLAQAQALYLPARAAYQRLAPAAQRLAELDNSINARADYFEKREQDPAFVGFHRL
EYALFQQRKLDGLTPIAQGLLDNVTTLKQQLLVQSLPPEQLVEIVVRNLNTLADVRAASGEEERYSHSDLNGFAANQETA
RKVVELLRPLLSKSAADLLPRIDGALADFDTTLDGFRVKDGYASYDTVNGEQRKQIADKAKALADALDAIDPALGLSGL
>Mature_398_residues
SKPNTPQASPPRALRWAVAGSVVVMIAAGGLFYYASKLAAAKRQHNRDEVVVNIHPHSCEPNTLTVPAGRASFRIVNRSD
RAVEWEILDGVLVIEERENIAPGLSQVINANLQPGDYAITCGLLSNPRGTLHVTPTAASDAAAKAKPSMVAFVGPLSEFR
VYLASQGSALIKAVTALNQAIDSGDLAQAQALYLPARAAYQRLAPAAQRLAELDNSINARADYFEKREQDPAFVGFHRLE
YALFQQRKLDGLTPIAQGLLDNVTTLKQQLLVQSLPPEQLVEIVVRNLNTLADVRAASGEEERYSHSDLNGFAANQETAR
KVVELLRPLLSKSAADLLPRIDGALADFDTTLDGFRVKDGYASYDTVNGEQRKQIADKAKALADALDAIDPALGLSGL

Specific function: Unknown

COG id: COG2822

COG function: function code P; Predicted periplasmic lipoprotein involved in iron transport

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0409 family [H]

Homologues:

Organism=Escherichia coli, GI1787254, Length=347, Percent_Identity=41.4985590778098, Blast_Score=283, Evalue=1e-77,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008972
- InterPro:   IPR018976 [H]

Pfam domain/function: PF09375 Peptidase_M75 [H]

EC number: NA

Molecular weight: Translated: 43024; Mature: 42893

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKPNTPQASPPRALRWAVAGSVVVMIAAGGLFYYASKLAAAKRQHNRDEVVVNIHPHSC
CCCCCCCCCCCCHHHHHHHHHHEEEEEHHCHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
EPNTLTVPAGRASFRIVNRSDRAVEWEILDGVLVIEERENIAPGLSQVINANLQPGDYAI
CCCEEEECCCCCEEEEECCCCCEEEEEEECCEEEEECCCCCCCCHHHHHCCCCCCCCEEE
TCGLLSNPRGTLHVTPTAASDAAAKAKPSMVAFVGPLSEFRVYLASQGSALIKAVTALNQ
EEEECCCCCCEEEECCCCCCCHHHHCCCCEEEEECCHHHHHHHHHCCCHHHHHHHHHHHH
AIDSGDLAQAQALYLPARAAYQRLAPAAQRLAELDNSINARADYFEKREQDPAFVGFHRL
HCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHH
EYALFQQRKLDGLTPIAQGLLDNVTTLKQQLLVQSLPPEQLVEIVVRNLNTLADVRAASG
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
EEERYSHSDLNGFAANQETARKVVELLRPLLSKSAADLLPRIDGALADFDTTLDGFRVKD
CHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCEEECC
GYASYDTVNGEQRKQIADKAKALADALDAIDPALGLSGL
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHCCCCCC
>Mature Secondary Structure 
SKPNTPQASPPRALRWAVAGSVVVMIAAGGLFYYASKLAAAKRQHNRDEVVVNIHPHSC
CCCCCCCCCCCHHHHHHHHHHEEEEEHHCHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
EPNTLTVPAGRASFRIVNRSDRAVEWEILDGVLVIEERENIAPGLSQVINANLQPGDYAI
CCCEEEECCCCCEEEEECCCCCEEEEEEECCEEEEECCCCCCCCHHHHHCCCCCCCCEEE
TCGLLSNPRGTLHVTPTAASDAAAKAKPSMVAFVGPLSEFRVYLASQGSALIKAVTALNQ
EEEECCCCCCEEEECCCCCCCHHHHCCCCEEEEECCHHHHHHHHHCCCHHHHHHHHHHHH
AIDSGDLAQAQALYLPARAAYQRLAPAAQRLAELDNSINARADYFEKREQDPAFVGFHRL
HCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHH
EYALFQQRKLDGLTPIAQGLLDNVTTLKQQLLVQSLPPEQLVEIVVRNLNTLADVRAASG
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
EEERYSHSDLNGFAANQETARKVVELLRPLLSKSAADLLPRIDGALADFDTTLDGFRVKD
CHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCEEECC
GYASYDTVNGEQRKQIADKAKALADALDAIDPALGLSGL
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]