Definition Pseudomonas fluorescens Pf0-1 chromosome, complete genome.
Accession NC_007492
Length 6,438,405

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The map label for this gene is ydfG [C]

Identifier: 77458941

GI number: 77458941

Start: 3132913

End: 3133710

Strand: Reverse

Name: ydfG [C]

Synonym: Pfl01_2716

Alternate gene names: 77458941

Gene position: 3133710-3132913 (Counterclockwise)

Preceding gene: 77458943

Following gene: 77458940

Centisome position: 48.67

GC content: 62.53

Gene sequence:

>798_bases
ATGACGCAACAATACAAAGGCACTGCGCTCATCACCGGCGCGTCCACCGGCATCGGCTCGATTTACGCCGAACACCTTGC
CCGCCGGGGTTACGACCTCGTGCTGGTGGCGCGCAACCGCGAACGTCTGAACGCACTGGCCAGCCGCCTGACCAGCGAAA
CCCGGCAGAACATCGAAGTGTTGCAGGCCGATCTTGGCCGCCCCGAGGACCTCGCCAAGGTAGAACGCAAGTTGCGTGAG
GACGCCAGCATCACTTTGCTGGTCAACAATGCCGGCATCGGCACCCATACCGGCCTGCTGGAGAGTGATGTAGAGCGAAT
GGCCGAGATGATCACGCTGAACGTCACCGCCCTCACCCGCCTGACCTACGCCGCGATTCCAGGTTTTGTCGCCCGCGAAC
GAGGCGCCGTGATCAATATTTCCTCGATCGTCAGCCTGGCGCCGGAGCTGCTCAACGGCGTGTACGGCGGCAGTAAGGCC
TACGTCACCGCGTTCACCCAGTCCCTGCACAAGGAACTCTCGGATAAAGGCATCCGGATCCAGGCCGTCCTGCCCGGCGC
AACCGCGACGGACTTCTGGCAAATCGGTGGATTGCCTGTCGAACATCTGGATCCGGGCATCGTGATGTCGGCCCAGGACC
TGGTCGCCGGCGCTCTGCAGGATTTCGACAACGGCGTGCTGATCTCCATCCCCTCGATGCACGACCTGCAAGGTTACGAG
CGTTACGAAGCCAGCCGCCAGGCCTTGTTCTCCGAGCTTTCGAGCAACCGGCTCGCGCCGCGCTACAACGCCAACTGA

Upstream 100 bases:

>100_bases
AACTCCTTTTTGAATGTCCTTAAACACTACCATATACGTCGTTTAAGACATCAGTCCCCTCCTTCATCATGGCTCCACAC
ACAACCCACGGAGCTTGATC

Downstream 100 bases:

>100_bases
TCGCTATCAAAAGGATATGAATCATGAAACTCAGCGCTAACACGATCTTCATCACCGGCGGCACCTCCGGCATTGGCCGC
GCTTTGGCCGAGGCATTTCA

Product: Short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 264

Protein sequence:

>265_residues
MTQQYKGTALITGASTGIGSIYAEHLARRGYDLVLVARNRERLNALASRLTSETRQNIEVLQADLGRPEDLAKVERKLRE
DASITLLVNNAGIGTHTGLLESDVERMAEMITLNVTALTRLTYAAIPGFVARERGAVINISSIVSLAPELLNGVYGGSKA
YVTAFTQSLHKELSDKGIRIQAVLPGATATDFWQIGGLPVEHLDPGIVMSAQDLVAGALQDFDNGVLISIPSMHDLQGYE
RYEASRQALFSELSSNRLAPRYNAN

Sequences:

>Translated_265_residues
MTQQYKGTALITGASTGIGSIYAEHLARRGYDLVLVARNRERLNALASRLTSETRQNIEVLQADLGRPEDLAKVERKLRE
DASITLLVNNAGIGTHTGLLESDVERMAEMITLNVTALTRLTYAAIPGFVARERGAVINISSIVSLAPELLNGVYGGSKA
YVTAFTQSLHKELSDKGIRIQAVLPGATATDFWQIGGLPVEHLDPGIVMSAQDLVAGALQDFDNGVLISIPSMHDLQGYE
RYEASRQALFSELSSNRLAPRYNAN
>Mature_264_residues
TQQYKGTALITGASTGIGSIYAEHLARRGYDLVLVARNRERLNALASRLTSETRQNIEVLQADLGRPEDLAKVERKLRED
ASITLLVNNAGIGTHTGLLESDVERMAEMITLNVTALTRLTYAAIPGFVARERGAVINISSIVSLAPELLNGVYGGSKAY
VTAFTQSLHKELSDKGIRIQAVLPGATATDFWQIGGLPVEHLDPGIVMSAQDLVAGALQDFDNGVLISIPSMHDLQGYER
YEASRQALFSELSSNRLAPRYNAN

Specific function: Unknown

COG id: COG0300

COG function: function code R; Short-chain dehydrogenases of various substrate specificities

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI7705855, Length=234, Percent_Identity=30.7692307692308, Blast_Score=115, Evalue=5e-26,
Organism=Homo sapiens, GI226371731, Length=195, Percent_Identity=30.7692307692308, Blast_Score=114, Evalue=8e-26,
Organism=Homo sapiens, GI4557649, Length=186, Percent_Identity=33.8709677419355, Blast_Score=110, Evalue=1e-24,
Organism=Homo sapiens, GI40254992, Length=198, Percent_Identity=30.3030303030303, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI5031737, Length=190, Percent_Identity=30.5263157894737, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI33667109, Length=189, Percent_Identity=30.6878306878307, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI7657478, Length=188, Percent_Identity=29.7872340425532, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI19743808, Length=185, Percent_Identity=32.4324324324324, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI7706318, Length=189, Percent_Identity=29.1005291005291, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI109715829, Length=192, Percent_Identity=30.7291666666667, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI31542939, Length=187, Percent_Identity=30.4812834224599, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI150247226, Length=188, Percent_Identity=31.9148936170213, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI32483357, Length=186, Percent_Identity=27.4193548387097, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI4504503, Length=189, Percent_Identity=28.042328042328, Blast_Score=68, Evalue=9e-12,
Organism=Homo sapiens, GI15277342, Length=199, Percent_Identity=32.1608040201005, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI22507405, Length=194, Percent_Identity=26.8041237113402, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI7705925, Length=186, Percent_Identity=30.1075268817204, Blast_Score=65, Evalue=7e-11,
Organism=Escherichia coli, GI1787820, Length=184, Percent_Identity=31.5217391304348, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787335, Length=185, Percent_Identity=31.3513513513514, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI87082100, Length=181, Percent_Identity=31.4917127071823, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI87082160, Length=189, Percent_Identity=26.984126984127, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1789208, Length=191, Percent_Identity=29.8429319371728, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1790717, Length=242, Percent_Identity=27.2727272727273, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1788459, Length=184, Percent_Identity=28.804347826087, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1786701, Length=190, Percent_Identity=27.8947368421053, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI2367175, Length=199, Percent_Identity=29.1457286432161, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787526, Length=210, Percent_Identity=27.1428571428571, Blast_Score=61, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI71994604, Length=192, Percent_Identity=35.9375, Blast_Score=101, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI71994600, Length=193, Percent_Identity=34.7150259067358, Blast_Score=96, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17557668, Length=190, Percent_Identity=33.1578947368421, Blast_Score=91, Evalue=6e-19,
Organism=Caenorhabditis elegans, GI212646214, Length=193, Percent_Identity=33.6787564766839, Blast_Score=91, Evalue=7e-19,
Organism=Caenorhabditis elegans, GI17559552, Length=190, Percent_Identity=32.6315789473684, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI25152911, Length=194, Percent_Identity=30.4123711340206, Blast_Score=88, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI17560176, Length=191, Percent_Identity=30.3664921465969, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17560676, Length=191, Percent_Identity=29.8429319371728, Blast_Score=80, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI17559104, Length=215, Percent_Identity=30.6976744186047, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17555706, Length=227, Percent_Identity=27.3127753303965, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17538480, Length=211, Percent_Identity=29.8578199052133, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17560150, Length=201, Percent_Identity=29.3532338308458, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI25147288, Length=180, Percent_Identity=28.8888888888889, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17560332, Length=206, Percent_Identity=30.5825242718447, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17562906, Length=223, Percent_Identity=30.4932735426009, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17563726, Length=210, Percent_Identity=25.7142857142857, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17562904, Length=210, Percent_Identity=30, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17562908, Length=222, Percent_Identity=29.7297297297297, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI193204405, Length=211, Percent_Identity=29.3838862559242, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI115534694, Length=184, Percent_Identity=30.9782608695652, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI17551412, Length=199, Percent_Identity=30.1507537688442, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17562910, Length=198, Percent_Identity=28.2828282828283, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17560220, Length=204, Percent_Identity=27.9411764705882, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17562990, Length=205, Percent_Identity=29.2682926829268, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17538486, Length=201, Percent_Identity=30.3482587064677, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17531453, Length=219, Percent_Identity=29.6803652968037, Blast_Score=65, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=193, Percent_Identity=35.7512953367876, Blast_Score=91, Evalue=2e-19,
Organism=Saccharomyces cerevisiae, GI6319635, Length=187, Percent_Identity=31.0160427807487, Blast_Score=85, Evalue=1e-17,
Organism=Saccharomyces cerevisiae, GI6322067, Length=202, Percent_Identity=26.2376237623762, Blast_Score=74, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24640442, Length=192, Percent_Identity=32.2916666666667, Blast_Score=114, Evalue=6e-26,
Organism=Drosophila melanogaster, GI24584748, Length=193, Percent_Identity=32.6424870466321, Blast_Score=110, Evalue=7e-25,
Organism=Drosophila melanogaster, GI161076933, Length=193, Percent_Identity=32.6424870466321, Blast_Score=110, Evalue=7e-25,
Organism=Drosophila melanogaster, GI28571526, Length=196, Percent_Identity=37.7551020408163, Blast_Score=104, Evalue=5e-23,
Organism=Drosophila melanogaster, GI24584744, Length=196, Percent_Identity=30.1020408163265, Blast_Score=102, Evalue=2e-22,
Organism=Drosophila melanogaster, GI28574402, Length=196, Percent_Identity=30.1020408163265, Blast_Score=102, Evalue=2e-22,
Organism=Drosophila melanogaster, GI23397609, Length=185, Percent_Identity=35.1351351351351, Blast_Score=99, Evalue=3e-21,
Organism=Drosophila melanogaster, GI24584752, Length=194, Percent_Identity=32.4742268041237, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI24644339, Length=196, Percent_Identity=33.1632653061224, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI21357041, Length=195, Percent_Identity=32.3076923076923, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI24580925, Length=192, Percent_Identity=32.2916666666667, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI24648944, Length=196, Percent_Identity=31.1224489795918, Blast_Score=75, Evalue=6e-14,
Organism=Drosophila melanogaster, GI116007236, Length=214, Percent_Identity=27.5700934579439, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI21355319, Length=187, Percent_Identity=27.807486631016, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24639444, Length=184, Percent_Identity=29.8913043478261, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI221331216, Length=192, Percent_Identity=27.6041666666667, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24665247, Length=192, Percent_Identity=27.6041666666667, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI116007238, Length=194, Percent_Identity=26.8041237113402, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI21358495, Length=195, Percent_Identity=28.2051282051282, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24641232, Length=207, Percent_Identity=29.4685990338164, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI221331218, Length=192, Percent_Identity=27.0833333333333, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24649181, Length=189, Percent_Identity=25.9259259259259, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24665243, Length=192, Percent_Identity=27.0833333333333, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24651139, Length=198, Percent_Identity=27.7777777777778, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI281364494, Length=209, Percent_Identity=28.7081339712919, Blast_Score=64, Evalue=7e-11,

Paralogues:

None

Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 28723; Mature: 28592

Theoretical pI: Translated: 6.04; Mature: 6.04

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MTQQYKGTALITGASTGIGSIYAEHLARRGYDLVLVARNRERLNALASRLTSETRQNIEV
CCCCCCCCEEEEECCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHH
LQADLGRPEDLAKVERKLREDASITLLVNNAGIGTHTGLLESDVERMAEMITLNVTALTR
HHHHCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LTYAAIPGFVARERGAVINISSIVSLAPELLNGVYGGSKAYVTAFTQSLHKELSDKGIRI
HHHHHCCCHHHHCCCCEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEE
QAVLPGATATDFWQIGGLPVEHLDPGIVMSAQDLVAGALQDFDNGVLISIPSMHDLQGYE
EEEECCCCCCHHHHCCCCCHHHCCCCEEECHHHHHHHHHHHCCCCEEEEECCCHHHHHHH
RYEASRQALFSELSSNRLAPRYNAN
HHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
TQQYKGTALITGASTGIGSIYAEHLARRGYDLVLVARNRERLNALASRLTSETRQNIEV
CCCCCCCEEEEECCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHH
LQADLGRPEDLAKVERKLREDASITLLVNNAGIGTHTGLLESDVERMAEMITLNVTALTR
HHHHCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LTYAAIPGFVARERGAVINISSIVSLAPELLNGVYGGSKAYVTAFTQSLHKELSDKGIRI
HHHHHCCCHHHHCCCCEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEE
QAVLPGATATDFWQIGGLPVEHLDPGIVMSAQDLVAGALQDFDNGVLISIPSMHDLQGYE
EEEECCCCCCHHHHCCCCCHHHCCCCEEECHHHHHHHHHHHCCCCEEEEECCCHHHHHHH
RYEASRQALFSELSSNRLAPRYNAN
HHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12950922 [H]