| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is ydfG [C]
Identifier: 77458703
GI number: 77458703
Start: 2833237
End: 2834025
Strand: Reverse
Name: ydfG [C]
Synonym: Pfl01_2478
Alternate gene names: 77458703
Gene position: 2834025-2833237 (Counterclockwise)
Preceding gene: 77458704
Following gene: 77458702
Centisome position: 44.02
GC content: 65.78
Gene sequence:
>789_bases ATGAGCACTCGCCCTACTGTTCTCATCACTGGCGCCTCTACCGGCATTGGCGCCGTCTATGCCGAACGCTTCGCCAAACG TGGTCACGATCTGGTACTGGTCGCCCGCGATCAGGCCCGCCTGGACACACTGGCAGCGCGCCTGCGCAGCGAGCACGACG TCGCCGTCGATGTCATCCCGGCAGACCTGACCCAACTCGCCGATCTGACCACCGTTGAAAGCCGCCTGCGCGACGACGCC CGCATCGGCATTCTCGTCAATAACGCCGGCGCCGCGCTGTCCGGCCACTTCGTCGACCAAAGCACCGACAGCGTCGCGCA ACTGGTGGCCCTCAACACCACGGCGCTGGTGCGGCTCGCCAGCGCCATCGCCCCACGCCTGGCCAAGGCCGGCGACGGCG CAATCATCAACATCGGTTCGGTGGTAGGCCTGGCGCCGGAGTTCGGCATGAGCGTCTACGGTGCGACCAAGGCCTTCGTG CTGTTCCTGTCCCAGGGCCTGAGCCTGGAACTCTCGCCGCAGGGCGTCTACGTGCAAGCCGTGCTACCCGCCGCCACCCG CACGGAAATCTGGGATCGCTCCGGCGTCGACATCAACACCCTGAGCGAAATCATGGAAGTGGGTGATCTGGTGGATGCCG CACTGGTCGGTTTTGATCGTCGCGAACCTGTGACCATCCCGCCGCTGCACGAAGCCGAGCGCTGGGATGACCTGCAGGGC GCACGCCAGGGCCTGCTGGGACAAATCCGCCAGTCTGCGGTTGCCCAGCGCTATCAGACGCCACAGTGA
Upstream 100 bases:
>100_bases CGGCGCGGCGGGCTACATCGACTACCCGACGCTGGCTGAATCGAGCGTCAGCGCAAGCTGAGCGCGTTCTGTTTCTCACC TCCTGAAAGAGAGATACCCC
Downstream 100 bases:
>100_bases TTTTTTGCTAGCGAGCATTCGCGCCGGGTTCGATGCAGGCACATGGCATTGCATCGCATCCTGCCGGCTTGCCGGAGTGA CAATGAGTTCAATGCAGACA
Product: Short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 262; Mature: 261
Protein sequence:
>262_residues MSTRPTVLITGASTGIGAVYAERFAKRGHDLVLVARDQARLDTLAARLRSEHDVAVDVIPADLTQLADLTTVESRLRDDA RIGILVNNAGAALSGHFVDQSTDSVAQLVALNTTALVRLASAIAPRLAKAGDGAIINIGSVVGLAPEFGMSVYGATKAFV LFLSQGLSLELSPQGVYVQAVLPAATRTEIWDRSGVDINTLSEIMEVGDLVDAALVGFDRREPVTIPPLHEAERWDDLQG ARQGLLGQIRQSAVAQRYQTPQ
Sequences:
>Translated_262_residues MSTRPTVLITGASTGIGAVYAERFAKRGHDLVLVARDQARLDTLAARLRSEHDVAVDVIPADLTQLADLTTVESRLRDDA RIGILVNNAGAALSGHFVDQSTDSVAQLVALNTTALVRLASAIAPRLAKAGDGAIINIGSVVGLAPEFGMSVYGATKAFV LFLSQGLSLELSPQGVYVQAVLPAATRTEIWDRSGVDINTLSEIMEVGDLVDAALVGFDRREPVTIPPLHEAERWDDLQG ARQGLLGQIRQSAVAQRYQTPQ >Mature_261_residues STRPTVLITGASTGIGAVYAERFAKRGHDLVLVARDQARLDTLAARLRSEHDVAVDVIPADLTQLADLTTVESRLRDDAR IGILVNNAGAALSGHFVDQSTDSVAQLVALNTTALVRLASAIAPRLAKAGDGAIINIGSVVGLAPEFGMSVYGATKAFVL FLSQGLSLELSPQGVYVQAVLPAATRTEIWDRSGVDINTLSEIMEVGDLVDAALVGFDRREPVTIPPLHEAERWDDLQGA RQGLLGQIRQSAVAQRYQTPQ
Specific function: Unknown
COG id: COG0300
COG function: function code R; Short-chain dehydrogenases of various substrate specificities
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI7705855, Length=187, Percent_Identity=31.5508021390374, Blast_Score=104, Evalue=7e-23, Organism=Homo sapiens, GI4557649, Length=184, Percent_Identity=33.695652173913, Blast_Score=98, Evalue=1e-20, Organism=Homo sapiens, GI226371731, Length=185, Percent_Identity=27.5675675675676, Blast_Score=95, Evalue=8e-20, Organism=Homo sapiens, GI4503817, Length=191, Percent_Identity=30.8900523560209, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI7706318, Length=190, Percent_Identity=30, Blast_Score=75, Evalue=7e-14, Organism=Homo sapiens, GI7705925, Length=229, Percent_Identity=28.82096069869, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI225579078, Length=212, Percent_Identity=26.4150943396226, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI32483357, Length=185, Percent_Identity=26.4864864864865, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI40254992, Length=184, Percent_Identity=29.3478260869565, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI5031737, Length=185, Percent_Identity=27.027027027027, Blast_Score=65, Evalue=8e-11, Organism=Homo sapiens, GI33667109, Length=185, Percent_Identity=27.027027027027, Blast_Score=64, Evalue=9e-11, Organism=Escherichia coli, GI1787820, Length=180, Percent_Identity=34.4444444444444, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI87082100, Length=188, Percent_Identity=32.4468085106383, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1787335, Length=188, Percent_Identity=30.3191489361702, Blast_Score=72, Evalue=5e-14, Organism=Escherichia coli, GI1790717, Length=189, Percent_Identity=27.5132275132275, Blast_Score=68, Evalue=5e-13, Organism=Escherichia coli, GI1788459, Length=185, Percent_Identity=29.1891891891892, Blast_Score=65, Evalue=3e-12, Organism=Escherichia coli, GI2367365, Length=209, Percent_Identity=30.622009569378, Blast_Score=63, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17557668, Length=190, Percent_Identity=34.2105263157895, Blast_Score=106, Evalue=1e-23, Organism=Caenorhabditis elegans, GI17559552, Length=190, Percent_Identity=32.1052631578947, Blast_Score=100, Evalue=7e-22, Organism=Caenorhabditis elegans, GI212646214, Length=190, Percent_Identity=32.6315789473684, Blast_Score=99, Evalue=3e-21, Organism=Caenorhabditis elegans, GI71994600, Length=206, Percent_Identity=32.5242718446602, Blast_Score=97, Evalue=7e-21, Organism=Caenorhabditis elegans, GI71994604, Length=206, Percent_Identity=31.5533980582524, Blast_Score=96, Evalue=1e-20, Organism=Caenorhabditis elegans, GI25152911, Length=197, Percent_Identity=30.9644670050761, Blast_Score=88, Evalue=5e-18, Organism=Caenorhabditis elegans, GI17560176, Length=190, Percent_Identity=27.8947368421053, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17561402, Length=206, Percent_Identity=27.6699029126214, Blast_Score=77, Evalue=8e-15, Organism=Caenorhabditis elegans, GI17508895, Length=200, Percent_Identity=28, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17562904, Length=204, Percent_Identity=29.9019607843137, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17551412, Length=197, Percent_Identity=28.4263959390863, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17532725, Length=189, Percent_Identity=28.042328042328, Blast_Score=71, Evalue=6e-13, Organism=Caenorhabditis elegans, GI17560332, Length=196, Percent_Identity=31.1224489795918, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI72000259, Length=187, Percent_Identity=32.620320855615, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17563726, Length=198, Percent_Identity=31.3131313131313, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI193204405, Length=216, Percent_Identity=31.0185185185185, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17538480, Length=189, Percent_Identity=30.6878306878307, Blast_Score=67, Evalue=7e-12, Organism=Caenorhabditis elegans, GI17560150, Length=192, Percent_Identity=30.2083333333333, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17560676, Length=191, Percent_Identity=28.7958115183246, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17564282, Length=228, Percent_Identity=26.3157894736842, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17562908, Length=210, Percent_Identity=29.0476190476191, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17531453, Length=215, Percent_Identity=27.906976744186, Blast_Score=64, Evalue=9e-11, Organism=Saccharomyces cerevisiae, GI6319635, Length=187, Percent_Identity=32.0855614973262, Blast_Score=89, Evalue=1e-18, Organism=Saccharomyces cerevisiae, GI6323882, Length=193, Percent_Identity=32.1243523316062, Blast_Score=76, Evalue=5e-15, Organism=Saccharomyces cerevisiae, GI6322067, Length=190, Percent_Identity=27.8947368421053, Blast_Score=67, Evalue=3e-12, Organism=Saccharomyces cerevisiae, GI6322861, Length=188, Percent_Identity=26.5957446808511, Blast_Score=66, Evalue=6e-12, Organism=Drosophila melanogaster, GI161076933, Length=256, Percent_Identity=29.296875, Blast_Score=106, Evalue=1e-23, Organism=Drosophila melanogaster, GI24584748, Length=184, Percent_Identity=32.0652173913043, Blast_Score=105, Evalue=3e-23, Organism=Drosophila melanogaster, GI28571526, Length=201, Percent_Identity=34.8258706467662, Blast_Score=100, Evalue=1e-21, Organism=Drosophila melanogaster, GI23397609, Length=194, Percent_Identity=33.5051546391753, Blast_Score=99, Evalue=3e-21, Organism=Drosophila melanogaster, GI28574402, Length=188, Percent_Identity=31.9148936170213, Blast_Score=97, Evalue=8e-21, Organism=Drosophila melanogaster, GI24584744, Length=188, Percent_Identity=31.3829787234043, Blast_Score=97, Evalue=8e-21, Organism=Drosophila melanogaster, GI24644339, Length=201, Percent_Identity=32.8358208955224, Blast_Score=91, Evalue=6e-19, Organism=Drosophila melanogaster, GI24640442, Length=192, Percent_Identity=31.25, Blast_Score=91, Evalue=7e-19, Organism=Drosophila melanogaster, GI21357041, Length=201, Percent_Identity=31.3432835820896, Blast_Score=89, Evalue=3e-18, Organism=Drosophila melanogaster, GI24584752, Length=223, Percent_Identity=29.5964125560538, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI21356301, Length=190, Percent_Identity=28.9473684210526, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI24643142, Length=219, Percent_Identity=29.6803652968037, Blast_Score=68, Evalue=5e-12, Organism=Drosophila melanogaster, GI24644337, Length=205, Percent_Identity=32.6829268292683, Blast_Score=67, Evalue=8e-12, Organism=Drosophila melanogaster, GI21358495, Length=188, Percent_Identity=29.2553191489362, Blast_Score=67, Evalue=2e-11,
Paralogues:
None
Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 27858; Mature: 27727
Theoretical pI: Translated: 4.93; Mature: 4.93
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTRPTVLITGASTGIGAVYAERFAKRGHDLVLVARDQARLDTLAARLRSEHDVAVDVIP CCCCCEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCEEEEEEC ADLTQLADLTTVESRLRDDARIGILVNNAGAALSGHFVDQSTDSVAQLVALNTTALVRLA HHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHH SAIAPRLAKAGDGAIINIGSVVGLAPEFGMSVYGATKAFVLFLSQGLSLELSPQGVYVQA HHHHHHHHHCCCCCEEECCHHHHCCHHHCCHHHHHHHHHHHHHHCCCEEEECCCCEEEEE VLPAATRTEIWDRSGVDINTLSEIMEVGDLVDAALVGFDRREPVTIPPLHEAERWDDLQG ECCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH ARQGLLGQIRQSAVAQRYQTPQ HHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure STRPTVLITGASTGIGAVYAERFAKRGHDLVLVARDQARLDTLAARLRSEHDVAVDVIP CCCCEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCEEEEEEC ADLTQLADLTTVESRLRDDARIGILVNNAGAALSGHFVDQSTDSVAQLVALNTTALVRLA HHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHH SAIAPRLAKAGDGAIINIGSVVGLAPEFGMSVYGATKAFVLFLSQGLSLELSPQGVYVQA HHHHHHHHHCCCCCEEECCHHHHCCHHHCCHHHHHHHHHHHHHHCCCEEEECCCCEEEEE VLPAATRTEIWDRSGVDINTLSEIMEVGDLVDAALVGFDRREPVTIPPLHEAERWDDLQG ECCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH ARQGLLGQIRQSAVAQRYQTPQ HHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12950922 [H]