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The map label for this gene is yncD [H]

Identifier: 77458545

GI number: 77458545

Start: 2673313

End: 2675439

Strand: Direct

Name: yncD [H]

Synonym: Pfl01_2318

Alternate gene names: 77458545

Gene position: 2673313-2675439 (Clockwise)

Preceding gene: 77458544

Following gene: 77458546

Centisome position: 41.52

GC content: 63.23

Gene sequence:

>2127_bases
ATGCCCGCGTTCAAAACCCTGCCCACTGCCTTGCTGGGGCTGGCCCTGGCCTGTCCGGCCCTGGCTGAAAGCCAGCGCCT
GGAGTTGGGGCAGGTGCTGATCGGCGCCGAGGACCGGAGCGGGGAGGATGCGTCGGTTGAAGAGGCCGAGGCGCGGCTTG
CGCAGGTGCCCGGCGGCACCAACGTGGTCGATATGCGCCGTCCGTTGCAGGGCCGGGTCGCGAGCAATCAGGACGTATTG
GCGTATCAGCCCGGTGTTTATGCCCAGTCAGCGGGCAACGAAGGGACGAAAATCTCGATCCGTGGCTCGGGCATCAACCG
TGCCCCCGGCGCCCACGCTTCGGGGCTGTACACGATGCTCGACGGCCTGCCGCTGACCGGCCCCGGCGGTACGCCTTACG
AATTACTGGAGCCGCTGTGGCTCGACCATGTAGAAGTGCTGCGCGGTGCCAACGGATTTGAACGCGGTTCGCTGGCTCTC
GGCGGGGCGGTCGATTACGTCAGCCACACCGGCTACAACGCGCCACTGCTGAATGTGCGCTATGTCATGGGCAGCCACGG
TTATGCCCAGCGACAAGTCAGCTCCGGTCAGGTGCTGGGCGATTTCGATTACTACCTGTCGATGACCGATGCGCATTCCG
ACGGTTATCAGGATCACACCGCGAGCAAGAGCCAGGGCGTGATCGCCAACTTCGGTTATCGCTTCAATCCGAATCTGGAA
ACCCGCTTCTACATTCGTCACCGCGAGACCGACAATGACCTCGCCGGTCGGGTGACCAAACACTCCATCGAGCATGATCC
GCGCGCGGCCAACCCGGCCTACGTGACGCGCAACGACAGCCGCGATCAGCCCGGCAGCACCTTCATCGGCAACAAGACCA
CGTACTACATCGATGACGATTCGAGCATTCAGACCGGTCTGGTTTATCACGACTACCCGATGGACCTGCGCGAAGGCCCC
AACCGCCTGAAGGTGGCGTACACCGATGTCAGCGGCACGTTCGACTACAAGCGTCGCGACACGCTCTGGGGGATGGAGAG
CAACAGCACCGTGGGCCTGCGAGTCACCAAGCACCTGCCTAACGACGGTGCCAGCGAACGGGTGCGGATTCCCACCGGCA
ACACCGCTGGCTATGCGCCGGGCACCCACATGCGCAACTTCACTTATCAGGGTTCGGATTCTGTCCTGCACGTGGGCAAC
GACCTGGAAATCGCTGACGACCTGTGGCTGACCACCGGCCTCGCCGCGATCTACACTCGCCGTGAAAGCGCGGTGACCTA
CCCGGAAGGCGGTGGCAAGACCAGCCTCGGCGACTGGGACTACGCGCCCCGTCTGGGCCTGCGCTATCAGGTGACGCCGG
ATCTGCAACTGTTCGGCAACCTCAGCCGTTCGGTCGAAGCGCCGCATCCGTGGTCGCTGATCTACAGCTCCAACGTACGC
TTCCCGGCCGGTAGCGGCGCAGCGACCGGCACCCAGCGCGACCCGGTCAAACTGCAGAACCAGACCGCGACCACCCTGGA
ACTCGGCGGCCGCGGCGACAGCGCGTTGGGCGAGTGGAGCCTGGCCTGGTACTACGCTCAAGTGCGCCACGAATTGCTTT
CGGTATTGCCGGACGCCAACACCACAACGCCATACGAACTCAATGCCAGCCCGACCGTGCACCAAGGTATTGAAGCCAGC
CTGCTCAGCAACCTGTGGTCAGCAAACGATGGCGGCAAGTTGAGCCTGCGCCAGGCCTATACCTTCAGCGACTTCCACTA
CCGCGACGACGACCGCTTCGGCGACAACCGCTTGCCGGGCCTGCCGATGCATTACTACCAGGGCGAACTGCGCTACGACT
TCCCGCAGGGGTTCTTCGCGGCGGTCAACACGCAACTGGTCTCGAAAACCGCAGTGGATTACGCCAACAGCTATTACGCC
GATCCTTACGCCACCTTCGGCGCGACCCTCGGTTACAACGCACCGAAAGGCGACTGGCAGACCTGGCTGGACATGCGCAA
CCTGACCGACAAACACTACGCCGCTACAGTTACGCCGGGCTATGACGATAAAGGACTGGACGCCGCACGCTCCACACCGG
GTGAGGGCATGGCGATGTATGTCGGGGTGTCGTGGAGTCTGCTTTGA

Upstream 100 bases:

>100_bases
TGAGTCCTCGCGGGCAAAACCCAAATCCCCATGTGCTCCGTTCGTCCCTTCATACGTCGCAGTTCTCACTGCCCGTTTCC
GTATGTCTGGAGTGCTCTCG

Downstream 100 bases:

>100_bases
GGGGCTGGGTTCACCTTGCAGAGCCGCATTGTCCTGCCACCTGAAAAACATTTTGGCGCTGCAAATGTATGCTCATCCCC
TTATCAGCCAAAGGTTCCCA

Product: TonB-dependent receptor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 708; Mature: 707

Protein sequence:

>708_residues
MPAFKTLPTALLGLALACPALAESQRLELGQVLIGAEDRSGEDASVEEAEARLAQVPGGTNVVDMRRPLQGRVASNQDVL
AYQPGVYAQSAGNEGTKISIRGSGINRAPGAHASGLYTMLDGLPLTGPGGTPYELLEPLWLDHVEVLRGANGFERGSLAL
GGAVDYVSHTGYNAPLLNVRYVMGSHGYAQRQVSSGQVLGDFDYYLSMTDAHSDGYQDHTASKSQGVIANFGYRFNPNLE
TRFYIRHRETDNDLAGRVTKHSIEHDPRAANPAYVTRNDSRDQPGSTFIGNKTTYYIDDDSSIQTGLVYHDYPMDLREGP
NRLKVAYTDVSGTFDYKRRDTLWGMESNSTVGLRVTKHLPNDGASERVRIPTGNTAGYAPGTHMRNFTYQGSDSVLHVGN
DLEIADDLWLTTGLAAIYTRRESAVTYPEGGGKTSLGDWDYAPRLGLRYQVTPDLQLFGNLSRSVEAPHPWSLIYSSNVR
FPAGSGAATGTQRDPVKLQNQTATTLELGGRGDSALGEWSLAWYYAQVRHELLSVLPDANTTTPYELNASPTVHQGIEAS
LLSNLWSANDGGKLSLRQAYTFSDFHYRDDDRFGDNRLPGLPMHYYQGELRYDFPQGFFAAVNTQLVSKTAVDYANSYYA
DPYATFGATLGYNAPKGDWQTWLDMRNLTDKHYAATVTPGYDDKGLDAARSTPGEGMAMYVGVSWSLL

Sequences:

>Translated_708_residues
MPAFKTLPTALLGLALACPALAESQRLELGQVLIGAEDRSGEDASVEEAEARLAQVPGGTNVVDMRRPLQGRVASNQDVL
AYQPGVYAQSAGNEGTKISIRGSGINRAPGAHASGLYTMLDGLPLTGPGGTPYELLEPLWLDHVEVLRGANGFERGSLAL
GGAVDYVSHTGYNAPLLNVRYVMGSHGYAQRQVSSGQVLGDFDYYLSMTDAHSDGYQDHTASKSQGVIANFGYRFNPNLE
TRFYIRHRETDNDLAGRVTKHSIEHDPRAANPAYVTRNDSRDQPGSTFIGNKTTYYIDDDSSIQTGLVYHDYPMDLREGP
NRLKVAYTDVSGTFDYKRRDTLWGMESNSTVGLRVTKHLPNDGASERVRIPTGNTAGYAPGTHMRNFTYQGSDSVLHVGN
DLEIADDLWLTTGLAAIYTRRESAVTYPEGGGKTSLGDWDYAPRLGLRYQVTPDLQLFGNLSRSVEAPHPWSLIYSSNVR
FPAGSGAATGTQRDPVKLQNQTATTLELGGRGDSALGEWSLAWYYAQVRHELLSVLPDANTTTPYELNASPTVHQGIEAS
LLSNLWSANDGGKLSLRQAYTFSDFHYRDDDRFGDNRLPGLPMHYYQGELRYDFPQGFFAAVNTQLVSKTAVDYANSYYA
DPYATFGATLGYNAPKGDWQTWLDMRNLTDKHYAATVTPGYDDKGLDAARSTPGEGMAMYVGVSWSLL
>Mature_707_residues
PAFKTLPTALLGLALACPALAESQRLELGQVLIGAEDRSGEDASVEEAEARLAQVPGGTNVVDMRRPLQGRVASNQDVLA
YQPGVYAQSAGNEGTKISIRGSGINRAPGAHASGLYTMLDGLPLTGPGGTPYELLEPLWLDHVEVLRGANGFERGSLALG
GAVDYVSHTGYNAPLLNVRYVMGSHGYAQRQVSSGQVLGDFDYYLSMTDAHSDGYQDHTASKSQGVIANFGYRFNPNLET
RFYIRHRETDNDLAGRVTKHSIEHDPRAANPAYVTRNDSRDQPGSTFIGNKTTYYIDDDSSIQTGLVYHDYPMDLREGPN
RLKVAYTDVSGTFDYKRRDTLWGMESNSTVGLRVTKHLPNDGASERVRIPTGNTAGYAPGTHMRNFTYQGSDSVLHVGND
LEIADDLWLTTGLAAIYTRRESAVTYPEGGGKTSLGDWDYAPRLGLRYQVTPDLQLFGNLSRSVEAPHPWSLIYSSNVRF
PAGSGAATGTQRDPVKLQNQTATTLELGGRGDSALGEWSLAWYYAQVRHELLSVLPDANTTTPYELNASPTVHQGIEASL
LSNLWSANDGGKLSLRQAYTFSDFHYRDDDRFGDNRLPGLPMHYYQGELRYDFPQGFFAAVNTQLVSKTAVDYANSYYAD
PYATFGATLGYNAPKGDWQTWLDMRNLTDKHYAATVTPGYDDKGLDAARSTPGEGMAMYVGVSWSLL

Specific function: Probable receptor, tonB-dependent [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1787723, Length=743, Percent_Identity=22.7456258411844, Blast_Score=79, Evalue=8e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 77475; Mature: 77344

Theoretical pI: Translated: 5.35; Mature: 5.35

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAFKTLPTALLGLALACPALAESQRLELGQVLIGAEDRSGEDASVEEAEARLAQVPGGT
CCCHHHHHHHHHHHHHHCHHHHCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCC
NVVDMRRPLQGRVASNQDVLAYQPGVYAQSAGNEGTKISIRGSGINRAPGAHASGLYTML
CEEECCCCCCCCCCCCCCEEEECCCCEEECCCCCCCEEEEECCCCCCCCCCCCCCHHHHH
DGLPLTGPGGTPYELLEPLWLDHVEVLRGANGFERGSLALGGAVDYVSHTGYNAPLLNVR
CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHCCCCCCEEEEE
YVMGSHGYAQRQVSSGQVLGDFDYYLSMTDAHSDGYQDHTASKSQGVIANFGYRFNPNLE
EEECCCCHHHHCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEECCEEECCCCC
TRFYIRHRETDNDLAGRVTKHSIEHDPRAANPAYVTRNDSRDQPGSTFIGNKTTYYIDDD
EEEEEEECCCCCHHHCCHHHHCCCCCCCCCCCCEEECCCCCCCCCCEEECCCEEEEECCC
SSIQTGLVYHDYPMDLREGPNRLKVAYTDVSGTFDYKRRDTLWGMESNSTVGLRVTKHLP
CCCEECEEEECCCCHHHCCCCEEEEEEEECCCCCCCCCCCCEECCCCCCEEEEEEEECCC
NDGASERVRIPTGNTAGYAPGTHMRNFTYQGSDSVLHVGNDLEIADDLWLTTGLAAIYTR
CCCCCCEEECCCCCCCCCCCCCCCCCEEECCCCCEEEECCCCEEHHHHHHHHHHHHHHCC
RESAVTYPEGGGKTSLGDWDYAPRLGLRYQVTPDLQLFGNLSRSVEAPHPWSLIYSSNVR
CCCCEECCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHCCHHCCCCCCCEEEEEECCCC
FPAGSGAATGTQRDPVKLQNQTATTLELGGRGDSALGEWSLAWYYAQVRHELLSVLPDAN
CCCCCCCCCCCCCCCEEECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
TTTPYELNASPTVHQGIEASLLSNLWSANDGGKLSLRQAYTFSDFHYRDDDRFGDNRLPG
CCCCEEECCCCCHHHCHHHHHHHHHHCCCCCCEEEEEEEEEECCCEECCCCCCCCCCCCC
LPMHYYQGELRYDFPQGFFAAVNTQLVSKTAVDYANSYYADPYATFGATLGYNAPKGDWQ
CCHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCHH
TWLDMRNLTDKHYAATVTPGYDDKGLDAARSTPGEGMAMYVGVSWSLL
HHHHHHCCCCCCEEEEECCCCCCCCCCHHCCCCCCCEEEEEEEEEEEC
>Mature Secondary Structure 
PAFKTLPTALLGLALACPALAESQRLELGQVLIGAEDRSGEDASVEEAEARLAQVPGGT
CCHHHHHHHHHHHHHHCHHHHCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCC
NVVDMRRPLQGRVASNQDVLAYQPGVYAQSAGNEGTKISIRGSGINRAPGAHASGLYTML
CEEECCCCCCCCCCCCCCEEEECCCCEEECCCCCCCEEEEECCCCCCCCCCCCCCHHHHH
DGLPLTGPGGTPYELLEPLWLDHVEVLRGANGFERGSLALGGAVDYVSHTGYNAPLLNVR
CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHCCCCCCEEEEE
YVMGSHGYAQRQVSSGQVLGDFDYYLSMTDAHSDGYQDHTASKSQGVIANFGYRFNPNLE
EEECCCCHHHHCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEECCEEECCCCC
TRFYIRHRETDNDLAGRVTKHSIEHDPRAANPAYVTRNDSRDQPGSTFIGNKTTYYIDDD
EEEEEEECCCCCHHHCCHHHHCCCCCCCCCCCCEEECCCCCCCCCCEEECCCEEEEECCC
SSIQTGLVYHDYPMDLREGPNRLKVAYTDVSGTFDYKRRDTLWGMESNSTVGLRVTKHLP
CCCEECEEEECCCCHHHCCCCEEEEEEEECCCCCCCCCCCCEECCCCCCEEEEEEEECCC
NDGASERVRIPTGNTAGYAPGTHMRNFTYQGSDSVLHVGNDLEIADDLWLTTGLAAIYTR
CCCCCCEEECCCCCCCCCCCCCCCCCEEECCCCCEEEECCCCEEHHHHHHHHHHHHHHCC
RESAVTYPEGGGKTSLGDWDYAPRLGLRYQVTPDLQLFGNLSRSVEAPHPWSLIYSSNVR
CCCCEECCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHCCHHCCCCCCCEEEEEECCCC
FPAGSGAATGTQRDPVKLQNQTATTLELGGRGDSALGEWSLAWYYAQVRHELLSVLPDAN
CCCCCCCCCCCCCCCEEECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
TTTPYELNASPTVHQGIEASLLSNLWSANDGGKLSLRQAYTFSDFHYRDDDRFGDNRLPG
CCCCEEECCCCCHHHCHHHHHHHHHHCCCCCCEEEEEEEEEECCCEECCCCCCCCCCCCC
LPMHYYQGELRYDFPQGFFAAVNTQLVSKTAVDYANSYYADPYATFGATLGYNAPKGDWQ
CCHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCHH
TWLDMRNLTDKHYAATVTPGYDDKGLDAARSTPGEGMAMYVGVSWSLL
HHHHHHCCCCCCEEEEECCCCCCCCCCHHCCCCCCCEEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]