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The map label for this gene is ydcR [C]

Identifier: 77458544

GI number: 77458544

Start: 2671827

End: 2673215

Strand: Direct

Name: ydcR [C]

Synonym: Pfl01_2317

Alternate gene names: 77458544

Gene position: 2671827-2673215 (Clockwise)

Preceding gene: 77458538

Following gene: 77458545

Centisome position: 41.5

GC content: 64.07

Gene sequence:

>1389_bases
ATGTGGGTTCCCCAGCTAAGCGAGTTCAACCAGCCGATGTATTTGTCGATTGCCGATGCGTTGGCGCGCGATATCAGCAA
TGGCGTGTTGAACGAAGGCGATCGCCTGCCGACCCTGCGGGAGCTGGCCACCACTCTGAATGTCACGCCGGGCACGATCA
GCCGGGCCTACAGCGAAGCCCATCGGCGGCGTCTGGTGCAGGGCGAGGTGGGGCGCGGGACGTATGTGCTGAGCCAGAGC
CAACTGGAGCTGCCGGCGAGCAACAGCGCCGCGCCGCTGAATCTGGGGCAGTCGGAGCTGCTTGATCTGTCGATCATCAA
GCCCTACAGCGAGACGCTGGAGTACTGGCTGCGCGGCGCGCTGGTGGGCATGGCCAAAAGCACGGATTTCGCCCGGGCCC
TTGATTACGCCCCGGACGGCGGTCACCCGGCCCATCGCGAGGCGGGTGCGCAGTGGCTGCGTCATTCCTTGCCCGACGCG
CAATGGCAGCAAGTGGTAATCACCGCCGGCGCCCAGCATGGCCTGATGGTCGCGATGAGCGCCCTGACCAATGCCGGCGA
CCTGGTGCTCTGCGAAGAGCTTTGTTACCCCGGCATCATTTCCCTGGCCCATGGCCTCGAGCGCCGTCTGCGTGGCGTGG
CCATGGACGACGAAGGGATCATTCCCGAAGCGTTGCGCGAGCTGTGTCTGCGGGAGAAACCGGCGATGCTGGTGTGCGTG
GCAACCTGTCAGAACCCGACGGCGTCGATCATGTCGCAAAAGCGCCGGGCGCAGATTGCGGCGCTGGCCGAAGAGTTCGA
CTTCATCATTCTCGACGATGACATCTACGGTTTTCTGGCCACCGATCCGTCGATCAAACCGCTGTCGGCGTTTGCGCCGG
ACCGTTCGGTGTACCTCACCAGCTTGTCCAAATCGGTCATGCCGGCGTTGCGCGTCGGCTATCTCTACAGTCCGCCGAAA
CTGCTGTCGCGCCTGACCTCGATGGTGCGCAGCAGCGTGTGGATGCCGTCGCCGCTGACCGCGCAACTGGCCAGCAATGT
GATCACCGAAGGCCTGGACAAGAAACTGATCCGCATCCAGCGCAACGAGGCCGCCGGCCGTCAGGCGATCGCCCAGGAAA
TCTTCGCCGGCTTCGAACTCAAGACCCAACCGTACTCGTACCACGTCTGGCTGACGCTGCCCGAACCCTGGACCGCCGAC
GAATTCACCATGCTCGCCCGGGCCAACGGTGTGCTGGTGCTCAGCGGCACGCAGTTCCAGGCGGAGCGCTTAGGGATCAC
CCGGTGCGTGCGGCTGGTGCTGATGTCGCCGACCAGCCAGGAAGAACTGCGCTTCGCCCTGACCAAACTGGCGAGCCTCA
TCGACTCGGATCCACGGCGGTATTACTGA

Upstream 100 bases:

>100_bases
CAATCGACTCAATTGATCGATTGGGTTGATTTATTAGTTGCCTAACCTCCGTGTGATATGCTCGGATATTCATCATTTCT
ACGATGGGCAGTGATCATTC

Downstream 100 bases:

>100_bases
GTCCTCGCGGGCAAAACCCAAATCCCCATGTGCTCCGTTCGTCCCTTCATACGTCGCAGTTCTCACTGCCCGTTTCCGTA
TGTCTGGAGTGCTCTCGATG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 462; Mature: 462

Protein sequence:

>462_residues
MWVPQLSEFNQPMYLSIADALARDISNGVLNEGDRLPTLRELATTLNVTPGTISRAYSEAHRRRLVQGEVGRGTYVLSQS
QLELPASNSAAPLNLGQSELLDLSIIKPYSETLEYWLRGALVGMAKSTDFARALDYAPDGGHPAHREAGAQWLRHSLPDA
QWQQVVITAGAQHGLMVAMSALTNAGDLVLCEELCYPGIISLAHGLERRLRGVAMDDEGIIPEALRELCLREKPAMLVCV
ATCQNPTASIMSQKRRAQIAALAEEFDFIILDDDIYGFLATDPSIKPLSAFAPDRSVYLTSLSKSVMPALRVGYLYSPPK
LLSRLTSMVRSSVWMPSPLTAQLASNVITEGLDKKLIRIQRNEAAGRQAIAQEIFAGFELKTQPYSYHVWLTLPEPWTAD
EFTMLARANGVLVLSGTQFQAERLGITRCVRLVLMSPTSQEELRFALTKLASLIDSDPRRYY

Sequences:

>Translated_462_residues
MWVPQLSEFNQPMYLSIADALARDISNGVLNEGDRLPTLRELATTLNVTPGTISRAYSEAHRRRLVQGEVGRGTYVLSQS
QLELPASNSAAPLNLGQSELLDLSIIKPYSETLEYWLRGALVGMAKSTDFARALDYAPDGGHPAHREAGAQWLRHSLPDA
QWQQVVITAGAQHGLMVAMSALTNAGDLVLCEELCYPGIISLAHGLERRLRGVAMDDEGIIPEALRELCLREKPAMLVCV
ATCQNPTASIMSQKRRAQIAALAEEFDFIILDDDIYGFLATDPSIKPLSAFAPDRSVYLTSLSKSVMPALRVGYLYSPPK
LLSRLTSMVRSSVWMPSPLTAQLASNVITEGLDKKLIRIQRNEAAGRQAIAQEIFAGFELKTQPYSYHVWLTLPEPWTAD
EFTMLARANGVLVLSGTQFQAERLGITRCVRLVLMSPTSQEELRFALTKLASLIDSDPRRYY
>Mature_462_residues
MWVPQLSEFNQPMYLSIADALARDISNGVLNEGDRLPTLRELATTLNVTPGTISRAYSEAHRRRLVQGEVGRGTYVLSQS
QLELPASNSAAPLNLGQSELLDLSIIKPYSETLEYWLRGALVGMAKSTDFARALDYAPDGGHPAHREAGAQWLRHSLPDA
QWQQVVITAGAQHGLMVAMSALTNAGDLVLCEELCYPGIISLAHGLERRLRGVAMDDEGIIPEALRELCLREKPAMLVCV
ATCQNPTASIMSQKRRAQIAALAEEFDFIILDDDIYGFLATDPSIKPLSAFAPDRSVYLTSLSKSVMPALRVGYLYSPPK
LLSRLTSMVRSSVWMPSPLTAQLASNVITEGLDKKLIRIQRNEAAGRQAIAQEIFAGFELKTQPYSYHVWLTLPEPWTAD
EFTMLARANGVLVLSGTQFQAERLGITRCVRLVLMSPTSQEELRFALTKLASLIDSDPRRYY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=357, Percent_Identity=27.1708683473389, Blast_Score=112, Evalue=6e-25,
Organism=Homo sapiens, GI33469970, Length=357, Percent_Identity=27.1708683473389, Blast_Score=112, Evalue=6e-25,
Organism=Escherichia coli, GI1787710, Length=441, Percent_Identity=27.437641723356, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1790797, Length=476, Percent_Identity=26.890756302521, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1788722, Length=279, Percent_Identity=27.5985663082437, Blast_Score=66, Evalue=4e-12,
Organism=Saccharomyces cerevisiae, GI6321236, Length=252, Percent_Identity=25.7936507936508, Blast_Score=80, Evalue=6e-16,
Organism=Saccharomyces cerevisiae, GI6321000, Length=227, Percent_Identity=26.8722466960352, Blast_Score=66, Evalue=1e-11,
Organism=Drosophila melanogaster, GI21356535, Length=319, Percent_Identity=22.884012539185, Blast_Score=72, Evalue=8e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 51019; Mature: 51019

Theoretical pI: Translated: 6.19; Mature: 6.19

Prosite motif: PS50949 HTH_GNTR ; PS00626 RCC1_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWVPQLSEFNQPMYLSIADALARDISNGVLNEGDRLPTLRELATTLNVTPGTISRAYSEA
CCCCCCHHCCCCEEEHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHH
HRRRLVQGEVGRGTYVLSQSQLELPASNSAAPLNLGQSELLDLSIIKPYSETLEYWLRGA
HHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHEEHEEECCHHHHHHHHHHHH
LVGMAKSTDFARALDYAPDGGHPAHREAGAQWLRHSLPDAQWQQVVITAGAQHGLMVAMS
HHHHHCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCHHHEEEEECCCCCHHHHHHH
ALTNAGDLVLCEELCYPGIISLAHGLERRLRGVAMDDEGIIPEALRELCLREKPAMLVCV
HHCCCCCEEEEHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEE
ATCQNPTASIMSQKRRAQIAALAEEFDFIILDDDIYGFLATDPSIKPLSAFAPDRSVYLT
EECCCCHHHHHHHHHHHHHHHHHHHCCEEEECCCCEEEEECCCCCCCHHHCCCCCHHHHH
SLSKSVMPALRVGYLYSPPKLLSRLTSMVRSSVWMPSPLTAQLASNVITEGLDKKLIRIQ
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
RNEAAGRQAIAQEIFAGFELKTQPYSYHVWLTLPEPWTADEFTMLARANGVLVLSGTQFQ
HHHHHHHHHHHHHHHCCCEEECCCEEEEEEEECCCCCCCCHHHHHEECCCEEEEECCCHH
AERLGITRCVRLVLMSPTSQEELRFALTKLASLIDSDPRRYY
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MWVPQLSEFNQPMYLSIADALARDISNGVLNEGDRLPTLRELATTLNVTPGTISRAYSEA
CCCCCCHHCCCCEEEHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHH
HRRRLVQGEVGRGTYVLSQSQLELPASNSAAPLNLGQSELLDLSIIKPYSETLEYWLRGA
HHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHEEHEEECCHHHHHHHHHHHH
LVGMAKSTDFARALDYAPDGGHPAHREAGAQWLRHSLPDAQWQQVVITAGAQHGLMVAMS
HHHHHCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCHHHEEEEECCCCCHHHHHHH
ALTNAGDLVLCEELCYPGIISLAHGLERRLRGVAMDDEGIIPEALRELCLREKPAMLVCV
HHCCCCCEEEEHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEE
ATCQNPTASIMSQKRRAQIAALAEEFDFIILDDDIYGFLATDPSIKPLSAFAPDRSVYLT
EECCCCHHHHHHHHHHHHHHHHHHHCCEEEECCCCEEEEECCCCCCCHHHCCCCCHHHHH
SLSKSVMPALRVGYLYSPPKLLSRLTSMVRSSVWMPSPLTAQLASNVITEGLDKKLIRIQ
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
RNEAAGRQAIAQEIFAGFELKTQPYSYHVWLTLPEPWTADEFTMLARANGVLVLSGTQFQ
HHHHHHHHHHHHHHHCCCEEECCCEEEEEEEECCCCCCCCHHHHHEECCCEEEEECCCHH
AERLGITRCVRLVLMSPTSQEELRFALTKLASLIDSDPRRYY
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1400197 [H]