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The map label for this gene is xylR [H]

Identifier: 77458531

GI number: 77458531

Start: 2656950

End: 2658125

Strand: Direct

Name: xylR [H]

Synonym: Pfl01_2304

Alternate gene names: 77458531

Gene position: 2656950-2658125 (Clockwise)

Preceding gene: 77458525

Following gene: 77458537

Centisome position: 41.27

GC content: 61.82

Gene sequence:

>1176_bases
ATGAAAACCGTACCGCCTGTTCACCGCATCGCCCTGTTGTTCAACGGCAGCAAGATCTATGACCGCGGCATCATCAGCGG
CATCGGCAACTACCTGAGCAGCACGCGCGCGTCTTGGGACCTGTTTCTGGAAGAGGATTTTCTCTGCCGCTTGAAAGGTA
TCGAGCGTTGGCAAGGTGACGGGATCATCGCCGACTTCGACGATCCGCTGATTGGCGAGGCGCTGGCCGATATCAAGTTG
CCCGTGGTAGCGGTGGGTGGTTCTTATCAGGATGAGCGGGCCTATCCCAAAGGCATCCCGTACGTCGCGACCGACAATAA
CGCGCTGATCACCATGGCTTACGAGCACTTGATCGAGGCCGGGTTGCAACGGTTTGCCTGTTTCAGCCTGCCGGAGGCGC
AGGCCAACCGCTGGGCCCAGGAACGCGAAAAGGCTTTTCTGCGATTGATGCAACGGGACGGCTCGCACGGCGAGGTCTAT
CGCGGCATGGGCACCAGCGCGCCGCTGTGGGACAGCGCCGTCGAACAGTTGATCGCCTGGCTGCAAAGCCTGCCCAAGCC
CATTGGCATCATCGCGGTCAGTGACGCCCGTGCCCGGCAGTTGCTGCAAGCCTGCCTGACCGCCGGCATCGCCGTTCCGG
AACAGGTGGCGTTGATCGGCATCGACAACGACCCACTGACCCGCAGCCTGACCCGGGTCCCGCTGAGTTCGGTGATTCAG
GGCACCGAAACCATGGGCCGCACCGCCGCGCAACTGCTGCACCAGATGCTGCACGGCAAACCGTCAACGGGCGCGCATTT
CCTGATCCCGCCCGAAGCGATCAACGTGCAGGTGTCGAGCTTGCATCAACCGTTGGGCAACCCCTACGTGATGCAGGCGC
TGCTGTTCATCCGCCAATATGCCTGTCAGGGCATCAAGACCGCGCAAGTGGCGGCCTATGTCGGTGTGTCGCGCTCCTCC
CTGGAATCGCACTTTCGCGCGGTGCGTGGTTGCAGCGTGCATGACGAGATTCTGCGTTTCAAACTGGCGGCGGCCACTCG
CGGACTGGAAAAAACCGACACAGCGATTGCGGACGTTGCCCGCACGTGCGGTTTCAAATCCGCACAGTACCTGCACACGG
TGTTTCGCCGGGAGTTCGGGTGTACGCCCCGTGAATATCAGCAGGGCGCCCGATAG

Upstream 100 bases:

>100_bases
CAACACGCAGTGCGATTTTGCGTATTGAGATTCGCCCTCTGCGCGCCTAGTCTGTGCAGACCGCCTCTACGGCAAGAGGC
CCGGAACAAGCCTGAAAACA

Downstream 100 bases:

>100_bases
CCGGCCACTCAAAAGCGATCCAGCCGATAGGGCTCGCTCGACGGGAGAATACGCGCCGTGTCCTGCGCCGACGGCAATAC
CATCCCCCCAACCATCTCCG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 391; Mature: 391

Protein sequence:

>391_residues
MKTVPPVHRIALLFNGSKIYDRGIISGIGNYLSSTRASWDLFLEEDFLCRLKGIERWQGDGIIADFDDPLIGEALADIKL
PVVAVGGSYQDERAYPKGIPYVATDNNALITMAYEHLIEAGLQRFACFSLPEAQANRWAQEREKAFLRLMQRDGSHGEVY
RGMGTSAPLWDSAVEQLIAWLQSLPKPIGIIAVSDARARQLLQACLTAGIAVPEQVALIGIDNDPLTRSLTRVPLSSVIQ
GTETMGRTAAQLLHQMLHGKPSTGAHFLIPPEAINVQVSSLHQPLGNPYVMQALLFIRQYACQGIKTAQVAAYVGVSRSS
LESHFRAVRGCSVHDEILRFKLAAATRGLEKTDTAIADVARTCGFKSAQYLHTVFRREFGCTPREYQQGAR

Sequences:

>Translated_391_residues
MKTVPPVHRIALLFNGSKIYDRGIISGIGNYLSSTRASWDLFLEEDFLCRLKGIERWQGDGIIADFDDPLIGEALADIKL
PVVAVGGSYQDERAYPKGIPYVATDNNALITMAYEHLIEAGLQRFACFSLPEAQANRWAQEREKAFLRLMQRDGSHGEVY
RGMGTSAPLWDSAVEQLIAWLQSLPKPIGIIAVSDARARQLLQACLTAGIAVPEQVALIGIDNDPLTRSLTRVPLSSVIQ
GTETMGRTAAQLLHQMLHGKPSTGAHFLIPPEAINVQVSSLHQPLGNPYVMQALLFIRQYACQGIKTAQVAAYVGVSRSS
LESHFRAVRGCSVHDEILRFKLAAATRGLEKTDTAIADVARTCGFKSAQYLHTVFRREFGCTPREYQQGAR
>Mature_391_residues
MKTVPPVHRIALLFNGSKIYDRGIISGIGNYLSSTRASWDLFLEEDFLCRLKGIERWQGDGIIADFDDPLIGEALADIKL
PVVAVGGSYQDERAYPKGIPYVATDNNALITMAYEHLIEAGLQRFACFSLPEAQANRWAQEREKAFLRLMQRDGSHGEVY
RGMGTSAPLWDSAVEQLIAWLQSLPKPIGIIAVSDARARQLLQACLTAGIAVPEQVALIGIDNDPLTRSLTRVPLSSVIQ
GTETMGRTAAQLLHQMLHGKPSTGAHFLIPPEAINVQVSSLHQPLGNPYVMQALLFIRQYACQGIKTAQVAAYVGVSRSS
LESHFRAVRGCSVHDEILRFKLAAATRGLEKTDTAIADVARTCGFKSAQYLHTVFRREFGCTPREYQQGAR

Specific function: Regulatory protein for the xylBAFGHR operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789993, Length=380, Percent_Identity=46.3157894736842, Blast_Score=360, Evalue=1e-101,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 43019; Mature: 43019

Theoretical pI: Translated: 8.07; Mature: 8.07

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTVPPVHRIALLFNGSKIYDRGIISGIGNYLSSTRASWDLFLEEDFLCRLKGIERWQGD
CCCCCCHHHEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCC
GIIADFDDPLIGEALADIKLPVVAVGGSYQDERAYPKGIPYVATDNNALITMAYEHLIEA
CEEECCCCCHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCEEEECCCEEEHHHHHHHHHH
GLQRFACFSLPEAQANRWAQEREKAFLRLMQRDGSHGEVYRGMGTSAPLWDSAVEQLIAW
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHH
LQSLPKPIGIIAVSDARARQLLQACLTAGIAVPEQVALIGIDNDPLTRSLTRVPLSSVIQ
HHHCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHCCHHHHHH
GTETMGRTAAQLLHQMLHGKPSTGAHFLIPPEAINVQVSSLHQPLGNPYVMQALLFIRQY
HHHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHCEEHHHHHCCCCCHHHHHHHHHHHHH
ACQGIKTAQVAAYVGVSRSSLESHFRAVRGCSVHDEILRFKLAAATRGLEKTDTAIADVA
HHCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHH
RTCGFKSAQYLHTVFRREFGCTPREYQQGAR
HHCCCCHHHHHHHHHHHHHCCCCHHHHCCCC
>Mature Secondary Structure
MKTVPPVHRIALLFNGSKIYDRGIISGIGNYLSSTRASWDLFLEEDFLCRLKGIERWQGD
CCCCCCHHHEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCC
GIIADFDDPLIGEALADIKLPVVAVGGSYQDERAYPKGIPYVATDNNALITMAYEHLIEA
CEEECCCCCHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCEEEECCCEEEHHHHHHHHHH
GLQRFACFSLPEAQANRWAQEREKAFLRLMQRDGSHGEVYRGMGTSAPLWDSAVEQLIAW
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHH
LQSLPKPIGIIAVSDARARQLLQACLTAGIAVPEQVALIGIDNDPLTRSLTRVPLSSVIQ
HHHCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHCCHHHHHH
GTETMGRTAAQLLHQMLHGKPSTGAHFLIPPEAINVQVSSLHQPLGNPYVMQALLFIRQY
HHHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHCEEHHHHHCCCCCHHHHHHHHHHHHH
ACQGIKTAQVAAYVGVSRSSLESHFRAVRGCSVHDEILRFKLAAATRGLEKTDTAIADVA
HHCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHH
RTCGFKSAQYLHTVFRREFGCTPREYQQGAR
HHCCCCHHHHHHHHHHHHHCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]