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The map label for this gene is sdsB [H]

Identifier: 77458508

GI number: 77458508

Start: 2632214

End: 2633137

Strand: Direct

Name: sdsB [H]

Synonym: Pfl01_2281

Alternate gene names: 77458508

Gene position: 2632214-2633137 (Clockwise)

Preceding gene: 77458503

Following gene: 77458509

Centisome position: 40.88

GC content: 62.45

Gene sequence:

>924_bases
ATGGACCTCAAACGACTGTCACACCTTCTCGCCCTGGCCGATGAACGCCATTTCGGTCGCGCCGCCGAGCGCGTGCACCT
CAGCCAGCCGGCCCTGAGCCGCAGCATTCAGGCGCTGGAAAGCGAAACCGGGCAGCGCCTGTTCGACCGCGACACCGGCG
ACGTCCGCCCGACACCGGCGGGGGTCTTTCTGATCGAGCGGGCGCGACGGTTGCTGTTCGATGCCCGTTCGCTGGAGCGC
GACATGACGCTCTACAGCGATCGCCAACTGGGCAGCCTCGCCTTTGGCGTCGGGCCGTTCCCGGCGGCCATGTTGATGCA
TCAAGTCGTGCCGCGACTGCGCCTGGATCACCCGGCGGTTACCCTACGTGTGGAAGTGAACAACTGGCAGATTCTCGAAG
CGCGGCTGCGCGCTGAAGGGATCGAATTCTTTGTTGCCGATATCCGTAACTTCACGGCCGAATCCGATCTTTTGATCCGC
TCGCTGGGCCAGGTTTCGGCAGGCTTCTTCGTGCGTCCGGAGCATCCGCTGGCCGGGCGTAAAGTGGCGATGGGCGAGCT
GGAAGGCTATGGCATCGCCACGACGCGCTTGCCCGAAGTCGTGAAACTCGAGACCGGCCGAACCCTCGGCATCTCGACCC
GCCAGGTGCTGCCCATTGTGCTGGAGTGTGATGATGTGGCGTTGCTCAAGACCGTCGCAGGTTCAACCGACACCATCCTC
GGCGTCATCCATGGCGCCGTGGCTGAAGACATTCGGGTGGGGCGTTTGATCGAGCTTCATGTTGTCGACAGACCGGGATT
TCACTCTGAAATCGGGGTGGTGAGTTTGCTGGGCAGGAGCTTGTCGCCGACGGCTTTGTGTGTGATCGAGGCGGTGGTTG
CCGAGATGCAATCCGTTCACGTCGAACAATCCCCACGTCTTTAG

Upstream 100 bases:

>100_bases
TTGTTCTCCGAGGGTCGAATGCGCTCCAGCCTAGGGGCAGGGCGGCGATGTATCCAATGCATTGTTTACATCCGGATAAT
GCGTCGCTAGCATCGGGCGA

Downstream 100 bases:

>100_bases
AGATACGTCCTACAGCCACGATTTTCCTGCTTCGTTAACGTCGTGCGGCCTCTTGCGAGGGGTTGCCGATGCATGAACGA
AAGGACAAATCAGTGGCTGT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MDLKRLSHLLALADERHFGRAAERVHLSQPALSRSIQALESETGQRLFDRDTGDVRPTPAGVFLIERARRLLFDARSLER
DMTLYSDRQLGSLAFGVGPFPAAMLMHQVVPRLRLDHPAVTLRVEVNNWQILEARLRAEGIEFFVADIRNFTAESDLLIR
SLGQVSAGFFVRPEHPLAGRKVAMGELEGYGIATTRLPEVVKLETGRTLGISTRQVLPIVLECDDVALLKTVAGSTDTIL
GVIHGAVAEDIRVGRLIELHVVDRPGFHSEIGVVSLLGRSLSPTALCVIEAVVAEMQSVHVEQSPRL

Sequences:

>Translated_307_residues
MDLKRLSHLLALADERHFGRAAERVHLSQPALSRSIQALESETGQRLFDRDTGDVRPTPAGVFLIERARRLLFDARSLER
DMTLYSDRQLGSLAFGVGPFPAAMLMHQVVPRLRLDHPAVTLRVEVNNWQILEARLRAEGIEFFVADIRNFTAESDLLIR
SLGQVSAGFFVRPEHPLAGRKVAMGELEGYGIATTRLPEVVKLETGRTLGISTRQVLPIVLECDDVALLKTVAGSTDTIL
GVIHGAVAEDIRVGRLIELHVVDRPGFHSEIGVVSLLGRSLSPTALCVIEAVVAEMQSVHVEQSPRL
>Mature_307_residues
MDLKRLSHLLALADERHFGRAAERVHLSQPALSRSIQALESETGQRLFDRDTGDVRPTPAGVFLIERARRLLFDARSLER
DMTLYSDRQLGSLAFGVGPFPAAMLMHQVVPRLRLDHPAVTLRVEVNNWQILEARLRAEGIEFFVADIRNFTAESDLLIR
SLGQVSAGFFVRPEHPLAGRKVAMGELEGYGIATTRLPEVVKLETGRTLGISTRQVLPIVLECDDVALLKTVAGSTDTIL
GVIHGAVAEDIRVGRLIELHVVDRPGFHSEIGVVSLLGRSLSPTALCVIEAVVAEMQSVHVEQSPRL

Specific function: Activates the transcription of the sdsA gene for sodium dodecyl sulfate (SDS) degradation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790399, Length=191, Percent_Identity=30.3664921465969, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI2367136, Length=77, Percent_Identity=49.3506493506493, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI87081904, Length=301, Percent_Identity=25.9136212624585, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1787601, Length=159, Percent_Identity=27.6729559748428, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI157672245, Length=190, Percent_Identity=32.1052631578947, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1787879, Length=72, Percent_Identity=44.4444444444444, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33808; Mature: 33808

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLKRLSHLLALADERHFGRAAERVHLSQPALSRSIQALESETGQRLFDRDTGDVRPTPA
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
GVFLIERARRLLFDARSLERDMTLYSDRQLGSLAFGVGPFPAAMLMHQVVPRLRLDHPAV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHHCCCCCEE
TLRVEVNNWQILEARLRAEGIEFFVADIRNFTAESDLLIRSLGQVSAGFFVRPEHPLAGR
EEEEEECCEEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEECCCCCCCCC
KVAMGELEGYGIATTRLPEVVKLETGRTLGISTRQVLPIVLECDDVALLKTVAGSTDTIL
EEEECCCCCCCEEHHCCCCEEEECCCCEECCCHHHHEEEEEECCCHHHHHHHCCCCHHHH
GVIHGAVAEDIRVGRLIELHVVDRPGFHSEIGVVSLLGRSLSPTALCVIEAVVAEMQSVH
HHHHHHHHHHHHHCEEEEEEEECCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHC
VEQSPRL
CCCCCCC
>Mature Secondary Structure
MDLKRLSHLLALADERHFGRAAERVHLSQPALSRSIQALESETGQRLFDRDTGDVRPTPA
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
GVFLIERARRLLFDARSLERDMTLYSDRQLGSLAFGVGPFPAAMLMHQVVPRLRLDHPAV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHHCCCCCEE
TLRVEVNNWQILEARLRAEGIEFFVADIRNFTAESDLLIRSLGQVSAGFFVRPEHPLAGR
EEEEEECCEEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEECCCCCCCCC
KVAMGELEGYGIATTRLPEVVKLETGRTLGISTRQVLPIVLECDDVALLKTVAGSTDTIL
EEEECCCCCCCEEHHCCCCEEEECCCCEECCCHHHHEEEEEECCCHHHHHHHCCCCHHHH
GVIHGAVAEDIRVGRLIELHVVDRPGFHSEIGVVSLLGRSLSPTALCVIEAVVAEMQSVH
HHHHHHHHHHHHHCEEEEEEEECCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHC
VEQSPRL
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1587481 [H]