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The map label for this gene is rbcR [H]

Identifier: 77458467

GI number: 77458467

Start: 2570306

End: 2571184

Strand: Reverse

Name: rbcR [H]

Synonym: Pfl01_2240

Alternate gene names: 77458467

Gene position: 2571184-2570306 (Counterclockwise)

Preceding gene: 77458472

Following gene: 77458465

Centisome position: 39.94

GC content: 58.93

Gene sequence:

>879_bases
ATGATCAAAGAACTCAAGACCCTCATTGCCGTCGCCCGGGAAGGCACTTTCGCAGCTGCCGGCAACCGGATAGGCCTCAC
CCAGGCGGCGGTGAGCGCCCAGATTCAACGTCTGGAAGCCGAGCTCGGCTTTGAAATATTCGACAGAAAAGGACGCACGG
CCCACCTCAACAGGATGGGCCAGCAAGTCCTGCTTCAGGCGCAGGAGCTGCTTCGTCTTTACGACAACCTGGGATCGACC
ACCGTCGGTCTTTCCACCCGCATTCTGGTCAACGTCGGTGCAATCGCCTCTGTCCAGCGATCGTTTCTCCCGGACGCACT
CGCCAGGTTTCACCAACAGTGCCCGGAATGCCGAACGCGTGTCGTGCCCGGTCTTTCCATGGAGCTGGTGAACCTGGTGG
ATACTGGCGAAATCGACATGGCGGCGATCATTCGGCCGCCCTTCTCGCTTCAAAGCGATCTGCGCTGGACCACGCTGGCG
CTTGAACCCTACCGTCTGATCGTGCCCAAGGACGTACCGGGAGAAGACTGGATCGAACTGCTCTCAAGCCTGCCGTTCAT
TCGGTATGACCGCTCTTCATTCGGCGGCAGGCAGGTCGATCGTTTCCTGCGACAGATGCATTTCACTTTGCGTGAAGTCT
CTGAGCTGGATGAGCTGGAGGCCATCATCAGGCTGGTGGAAAATGGCGTAGGGGTCGCGCTTGTGCCGCAGACGGCCACC
CATCAGCAATGGCCGTCAGGTGTGCGGGCGCTTGATCTCGGCCAACATACGTTCCATCGCGATATCGGACTGGTGCACAG
GCCTCGGCGAAGTTTCACCGAGCCTGTCAGGACATTGGCTGAACTTATTCTCGAGCAATTCAAGGTGGCGGCTGAGTGA

Upstream 100 bases:

>100_bases
ACTCCGATACGGTTTTTGTGGTTGGTGAGCACATCGTAGGGCGACACTGACAGCAAAAAAATCAATATATATTTCTCAGA
AACACAACTAATATTTGTGA

Downstream 100 bases:

>100_bases
GGGTCGATGGCTCACCCCTCAACAAGCCGCCCCGCAACCCACGTACGACTATACCCAAGCACCCTCCCCGCCAACCCCAG
CGGAAAATGAATCACCCCAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MIKELKTLIAVAREGTFAAAGNRIGLTQAAVSAQIQRLEAELGFEIFDRKGRTAHLNRMGQQVLLQAQELLRLYDNLGST
TVGLSTRILVNVGAIASVQRSFLPDALARFHQQCPECRTRVVPGLSMELVNLVDTGEIDMAAIIRPPFSLQSDLRWTTLA
LEPYRLIVPKDVPGEDWIELLSSLPFIRYDRSSFGGRQVDRFLRQMHFTLREVSELDELEAIIRLVENGVGVALVPQTAT
HQQWPSGVRALDLGQHTFHRDIGLVHRPRRSFTEPVRTLAELILEQFKVAAE

Sequences:

>Translated_292_residues
MIKELKTLIAVAREGTFAAAGNRIGLTQAAVSAQIQRLEAELGFEIFDRKGRTAHLNRMGQQVLLQAQELLRLYDNLGST
TVGLSTRILVNVGAIASVQRSFLPDALARFHQQCPECRTRVVPGLSMELVNLVDTGEIDMAAIIRPPFSLQSDLRWTTLA
LEPYRLIVPKDVPGEDWIELLSSLPFIRYDRSSFGGRQVDRFLRQMHFTLREVSELDELEAIIRLVENGVGVALVPQTAT
HQQWPSGVRALDLGQHTFHRDIGLVHRPRRSFTEPVRTLAELILEQFKVAAE
>Mature_292_residues
MIKELKTLIAVAREGTFAAAGNRIGLTQAAVSAQIQRLEAELGFEIFDRKGRTAHLNRMGQQVLLQAQELLRLYDNLGST
TVGLSTRILVNVGAIASVQRSFLPDALARFHQQCPECRTRVVPGLSMELVNLVDTGEIDMAAIIRPPFSLQSDLRWTTLA
LEPYRLIVPKDVPGEDWIELLSSLPFIRYDRSSFGGRQVDRFLRQMHFTLREVSELDELEAIIRLVENGVGVALVPQTAT
HQQWPSGVRALDLGQHTFHRDIGLVHRPRRSFTEPVRTLAELILEQFKVAAE

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcL and rbcS) expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=278, Percent_Identity=24.1007194244604, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788748, Length=294, Percent_Identity=25.8503401360544, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787601, Length=143, Percent_Identity=29.3706293706294, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI87081904, Length=175, Percent_Identity=29.7142857142857, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1787879, Length=247, Percent_Identity=24.6963562753036, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI87082132, Length=287, Percent_Identity=24.0418118466899, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790208, Length=266, Percent_Identity=27.4436090225564, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788626, Length=148, Percent_Identity=31.0810810810811, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1788481, Length=264, Percent_Identity=26.1363636363636, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1790262, Length=175, Percent_Identity=28.5714285714286, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32780; Mature: 32780

Theoretical pI: Translated: 7.22; Mature: 7.22

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKELKTLIAVAREGTFAAAGNRIGLTQAAVSAQIQRLEAELGFEIFDRKGRTAHLNRMG
CHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHCHHHHHCCCCCHHHHHHH
QQVLLQAQELLRLYDNLGSTTVGLSTRILVNVGAIASVQRSFLPDALARFHQQCPECRTR
HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
VVPGLSMELVNLVDTGEIDMAAIIRPPFSLQSDLRWTTLALEPYRLIVPKDVPGEDWIEL
CCCCCHHHHHHHHCCCCCCCHHEECCCCCCCCCCCEEEEEECCEEEEECCCCCCHHHHHH
LSSLPFIRYDRSSFGGRQVDRFLRQMHFTLREVSELDELEAIIRLVENGVGVALVPQTAT
HHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCC
HQQWPSGVRALDLGQHTFHRDIGLVHRPRRSFTEPVRTLAELILEQFKVAAE
HHCCCCCCHHHHCCHHHHHHHHCHHCCCHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIKELKTLIAVAREGTFAAAGNRIGLTQAAVSAQIQRLEAELGFEIFDRKGRTAHLNRMG
CHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHCHHHHHCCCCCHHHHHHH
QQVLLQAQELLRLYDNLGSTTVGLSTRILVNVGAIASVQRSFLPDALARFHQQCPECRTR
HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
VVPGLSMELVNLVDTGEIDMAAIIRPPFSLQSDLRWTTLALEPYRLIVPKDVPGEDWIEL
CCCCCHHHHHHHHCCCCCCCHHEECCCCCCCCCCCEEEEEECCEEEEECCCCCCHHHHHH
LSSLPFIRYDRSSFGGRQVDRFLRQMHFTLREVSELDELEAIIRLVENGVGVALVPQTAT
HHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCC
HQQWPSGVRALDLGQHTFHRDIGLVHRPRRSFTEPVRTLAELILEQFKVAAE
HHCCCCCCHHHHCCHHHHHHHHCHHCCCHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA