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The map label for this gene is rhaS [C]

Identifier: 77458451

GI number: 77458451

Start: 2546987

End: 2547823

Strand: Reverse

Name: rhaS [C]

Synonym: Pfl01_2224

Alternate gene names: 77458451

Gene position: 2547823-2546987 (Counterclockwise)

Preceding gene: 77458456

Following gene: 77458450

Centisome position: 39.57

GC content: 61.17

Gene sequence:

>837_bases
ATGAGCCCTCGAAACCGTCGCCATCCCATAACCGTTGATGAACCGATACGTCGTGTCGAAGCCGGCCCGTGGGCGATCGA
GCTGCTGCCGGGCGCAGCCTACTCGGTGCGGTACGTGGCGACCCAATCAGCGATCGGCTTTGCCTTCGACAGCCAGCGCG
GCGTGCACGCCATTGGTACTGACCGGATACGCCCCTTCGATGCGATGCCCAATGGCCTGGCGTTTGTTCCGGCTGGATGT
GACGTGTTGTCCGAGTCACCCACGGGCGGCGAGTACCTGCGAGTGATACGCACGGACGGCACGGCACTGGCGGGAGACAG
TGCGTTCAACAATCGCATCGACCCGCAGGCCATTCACCTCGCGTCGCGAATGCGCAATGCGCTGTTGCAAGCCTCTCTGG
ATGATGACTGGGAAAGCTGGGCGCTCAACCTGGCTGAACGGGTTGAGGGCCATGAGGCGGCAATGCATCAAGGCTCGATC
ACCGGCAGCCGAATGCGCCTGCTGGATGAATTCATTGACGCCGGTCTCGGCAGCCCGCTCGCCGTCCCGGCGATGGCGCA
ATTGCTGGAGTTGTCCGAAGGTTATTTCATGCGCGCCTTCAAGCAGGCGACCGGCAAAAGCCCTCACAGTTACCTGATCG
ACAGACGCCTGGCCAAAGCCCGAGCGTCAATGCGCGATACAACGGCCAGCCTCTCGCAGATAGCCCTCGCTTGCGGTTTC
AACTCGCAGGCGCATATGACCACAGCCTTCAAACAGCGCCTCGGCGTGAGTCCGGCGCAATTGCGCACAGATTCGCGCCA
TAGCTCTGCTACCGACAAACAACATTCTTCTATATAG

Upstream 100 bases:

>100_bases
GGCTCCTTGGACGTTGGCCCAGTCTAGGCACGGACGCATCACGTCGGCTTTCAAAAAACCGACCTGACTTTTACCCGCCC
CCTTCACTACTATTGCGTTC

Downstream 100 bases:

>100_bases
AAGAAGCGGCCAGAAACCCGGCACCTGCCGGGCTTGTTTTTTACCCAAACCATTTCAGCGAACAACCAGTGGCATTCAAA
CGCCCTTGTATGGTGTCCTG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator AraC Family Protein; AraC-Family Transcriptional Regulator; AraC Family Transcription Regulator; AraC Family Regulatory Protein; Transcriptional Regulator AraC; Transcriptional Regulator Protein AraC Family; Transcriptional Regulator Protein; Transcriptional Regulator AraC-Type; AraC/XylS Family Transcriptional Regulator; Transcription Regulator AraC Family; Proline Utilization Regulator; Helix-Turn-Helix- Domain Containing Protein; AraC/XylS Family Transcription Factor; HTH-Type Transcriptional Regulator ChbR; AraC Type Helix-Turn-Helix- Domain-Containing Protein; Helix-Turn-Helix- Domain Containing Protein AraC Type; Helix-Turn-Helix AraC Type; AraC-Type Trancriptional Regulator; AraC Family Helix-Turn-Helix Transcriptional Regulator; AraC Family Transcription Regulator Protein; Xyls/AraC-Type Transcriptional Activator

Number of amino acids: Translated: 278; Mature: 277

Protein sequence:

>278_residues
MSPRNRRHPITVDEPIRRVEAGPWAIELLPGAAYSVRYVATQSAIGFAFDSQRGVHAIGTDRIRPFDAMPNGLAFVPAGC
DVLSESPTGGEYLRVIRTDGTALAGDSAFNNRIDPQAIHLASRMRNALLQASLDDDWESWALNLAERVEGHEAAMHQGSI
TGSRMRLLDEFIDAGLGSPLAVPAMAQLLELSEGYFMRAFKQATGKSPHSYLIDRRLAKARASMRDTTASLSQIALACGF
NSQAHMTTAFKQRLGVSPAQLRTDSRHSSATDKQHSSI

Sequences:

>Translated_278_residues
MSPRNRRHPITVDEPIRRVEAGPWAIELLPGAAYSVRYVATQSAIGFAFDSQRGVHAIGTDRIRPFDAMPNGLAFVPAGC
DVLSESPTGGEYLRVIRTDGTALAGDSAFNNRIDPQAIHLASRMRNALLQASLDDDWESWALNLAERVEGHEAAMHQGSI
TGSRMRLLDEFIDAGLGSPLAVPAMAQLLELSEGYFMRAFKQATGKSPHSYLIDRRLAKARASMRDTTASLSQIALACGF
NSQAHMTTAFKQRLGVSPAQLRTDSRHSSATDKQHSSI
>Mature_277_residues
SPRNRRHPITVDEPIRRVEAGPWAIELLPGAAYSVRYVATQSAIGFAFDSQRGVHAIGTDRIRPFDAMPNGLAFVPAGCD
VLSESPTGGEYLRVIRTDGTALAGDSAFNNRIDPQAIHLASRMRNALLQASLDDDWESWALNLAERVEGHEAAMHQGSIT
GSRMRLLDEFIDAGLGSPLAVPAMAQLLELSEGYFMRAFKQATGKSPHSYLIDRRLAKARASMRDTTASLSQIALACGFN
SQAHMTTAFKQRLGVSPAQLRTDSRHSSATDKQHSSI

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30259; Mature: 30127

Theoretical pI: Translated: 8.27; Mature: 8.27

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPRNRRHPITVDEPIRRVEAGPWAIELLPGAAYSVRYVATQSAIGFAFDSQRGVHAIGT
CCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCEEEEEEEHHHHHEEEECCCCCCEECCC
DRIRPFDAMPNGLAFVPAGCDVLSESPTGGEYLRVIRTDGTALAGDSAFNNRIDPQAIHL
CCCCCCCCCCCCCEEECCCCHHHCCCCCCCCEEEEEECCCCEEECCCHHCCCCCHHHHHH
ASRMRNALLQASLDDDWESWALNLAERVEGHEAAMHQGSITGSRMRLLDEFIDAGLGSPL
HHHHHHHHHHCCCCCCHHHHHHHHHHHHCHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCC
AVPAMAQLLELSEGYFMRAFKQATGKSPHSYLIDRRLAKARASMRDTTASLSQIALACGF
HHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
NSQAHMTTAFKQRLGVSPAQLRTDSRHSSATDKQHSSI
CCCHHHHHHHHHHHCCCHHHHCCCCCCCCCCCHHHCCC
>Mature Secondary Structure 
SPRNRRHPITVDEPIRRVEAGPWAIELLPGAAYSVRYVATQSAIGFAFDSQRGVHAIGT
CCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCEEEEEEEHHHHHEEEECCCCCCEECCC
DRIRPFDAMPNGLAFVPAGCDVLSESPTGGEYLRVIRTDGTALAGDSAFNNRIDPQAIHL
CCCCCCCCCCCCCEEECCCCHHHCCCCCCCCEEEEEECCCCEEECCCHHCCCCCHHHHHH
ASRMRNALLQASLDDDWESWALNLAERVEGHEAAMHQGSITGSRMRLLDEFIDAGLGSPL
HHHHHHHHHHCCCCCCHHHHHHHHHHHHCHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCC
AVPAMAQLLELSEGYFMRAFKQATGKSPHSYLIDRRLAKARASMRDTTASLSQIALACGF
HHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
NSQAHMTTAFKQRLGVSPAQLRTDSRHSSATDKQHSSI
CCCHHHHHHHHHHHCCCHHHHCCCCCCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA