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The map label for this gene is ybfI [H]

Identifier: 77458392

GI number: 77458392

Start: 2447592

End: 2448425

Strand: Reverse

Name: ybfI [H]

Synonym: Pfl01_2165

Alternate gene names: 77458392

Gene position: 2448425-2447592 (Counterclockwise)

Preceding gene: 77458393

Following gene: 77458390

Centisome position: 38.03

GC content: 60.79

Gene sequence:

>834_bases
ATGAAACACGCTGCCGCCAAGAACCCCGAACAAGCCCCGCGCTTCTGGCGCGACGACGCCCTGCCCTTCATCGAGGCGCG
GGCCATCGCCGACGGGCGTGAGGTCTGCTATTCACGGCACTCCCACGCGCATTTCTCCATCGGCGCGATCACCGCCGGGC
GCAGCACTTACGTGCATGAGCAATCCTCGTTCGAAGTGGCGGCCGGCACGGTGGTGCTGATGAACCCGGGAGACGTGCAC
GCGTGCAACCCGATCGATGATCAGCCGTGGTCGTATTTGATGTTGTACGTGGAAACGCCGTGGCTGACCGATCTGCAGCA
TCAGTTGGGGTTCAGTGCGGAGCTTGAGTTTCGGCGGTTTTCCGATACCCACTTGAATGATGCTCGCCTGTTTCGCGACT
TGAATGGGTTGTACGGCGTGTTGGTCGACGATCAGCAAGACGTGCTGCGCAAACAGAGCGCCGCCGTGGAGTTTTTCAGC
GAGCTGCAACTGCGCCTGAACCCCATCGAACAATCCATCCGCGAACCGAATTTCAAACTCGAACGCGCCGCCGACTTCAT
CCGCCAGCATTGCACCGACCTGCTCAGCCTCGACGACATCTGCGCCGCTGCCGAACTGTCACCGTCCTACCTGATCCGCG
CCTTCAAACAGCACTTCGGCATGACGCCCCATGCGTTTTTGGTCAATCAGCGAATTCAGTTTGCCCGCGAGCGTTTACGG
CGCGGGCAGTTGATTGCGGATGTGGCGCTGGAGGCCGGGTTTGCCGATCAGGCGCATTTTCAGCGGGCGTTCAAGCAGCA
TCTGGCGGCTACGCCGGGGCAGTATCGGGGATAA

Upstream 100 bases:

>100_bases
CCATGTTCGGGATGAAAAAACTCGATATTGCCGAACTGGAGCGAGCCTTCGCCGGCCAGAGCTAATACACTCGGGCACTG
GCCTGCCGAGAACTCCAACG

Downstream 100 bases:

>100_bases
GCTCAAACCCAACACCCGCTACCTCATCGCCCCCGGCATCGACAGCGAAGAATTGCTGGCCGACGCCTGTGAAACCCTGA
CCTCGGCCAAAATCGGTTTC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 277; Mature: 277

Protein sequence:

>277_residues
MKHAAAKNPEQAPRFWRDDALPFIEARAIADGREVCYSRHSHAHFSIGAITAGRSTYVHEQSSFEVAAGTVVLMNPGDVH
ACNPIDDQPWSYLMLYVETPWLTDLQHQLGFSAELEFRRFSDTHLNDARLFRDLNGLYGVLVDDQQDVLRKQSAAVEFFS
ELQLRLNPIEQSIREPNFKLERAADFIRQHCTDLLSLDDICAAAELSPSYLIRAFKQHFGMTPHAFLVNQRIQFARERLR
RGQLIADVALEAGFADQAHFQRAFKQHLAATPGQYRG

Sequences:

>Translated_277_residues
MKHAAAKNPEQAPRFWRDDALPFIEARAIADGREVCYSRHSHAHFSIGAITAGRSTYVHEQSSFEVAAGTVVLMNPGDVH
ACNPIDDQPWSYLMLYVETPWLTDLQHQLGFSAELEFRRFSDTHLNDARLFRDLNGLYGVLVDDQQDVLRKQSAAVEFFS
ELQLRLNPIEQSIREPNFKLERAADFIRQHCTDLLSLDDICAAAELSPSYLIRAFKQHFGMTPHAFLVNQRIQFARERLR
RGQLIADVALEAGFADQAHFQRAFKQHLAATPGQYRG
>Mature_277_residues
MKHAAAKNPEQAPRFWRDDALPFIEARAIADGREVCYSRHSHAHFSIGAITAGRSTYVHEQSSFEVAAGTVVLMNPGDVH
ACNPIDDQPWSYLMLYVETPWLTDLQHQLGFSAELEFRRFSDTHLNDARLFRDLNGLYGVLVDDQQDVLRKQSAAVEFFS
ELQLRLNPIEQSIREPNFKLERAADFIRQHCTDLLSLDDICAAAELSPSYLIRAFKQHFGMTPHAFLVNQRIQFARERLR
RGQLIADVALEAGFADQAHFQRAFKQHLAATPGQYRG

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 31552; Mature: 31552

Theoretical pI: Translated: 6.57; Mature: 6.57

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHAAAKNPEQAPRFWRDDALPFIEARAIADGREVCYSRHSHAHFSIGAITAGRSTYVHE
CCCCCCCCCHHHHHHHHCCCCCHHHHHHHHCHHHHHHHCCCCCEEEEEEEECCCCEEEEC
QSSFEVAAGTVVLMNPGDVHACNPIDDQPWSYLMLYVETPWLTDLQHQLGFSAELEFRRF
CCCCEEEECEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHCCCCCEEEHHHC
SDTHLNDARLFRDLNGLYGVLVDDQQDVLRKQSAAVEFFSELQLRLNPIEQSIREPNFKL
CCCCCHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
ERAADFIRQHCTDLLSLDDICAAAELSPSYLIRAFKQHFGMTPHAFLVNQRIQFARERLR
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
RGQLIADVALEAGFADQAHFQRAFKQHLAATPGQYRG
CCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MKHAAAKNPEQAPRFWRDDALPFIEARAIADGREVCYSRHSHAHFSIGAITAGRSTYVHE
CCCCCCCCCHHHHHHHHCCCCCHHHHHHHHCHHHHHHHCCCCCEEEEEEEECCCCEEEEC
QSSFEVAAGTVVLMNPGDVHACNPIDDQPWSYLMLYVETPWLTDLQHQLGFSAELEFRRF
CCCCEEEECEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHCCCCCEEEHHHC
SDTHLNDARLFRDLNGLYGVLVDDQQDVLRKQSAAVEFFSELQLRLNPIEQSIREPNFKL
CCCCCHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
ERAADFIRQHCTDLLSLDDICAAAELSPSYLIRAFKQHFGMTPHAFLVNQRIQFARERLR
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
RGQLIADVALEAGFADQAHFQRAFKQHLAATPGQYRG
CCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]