Click here to switch to the map view.

The map label for this gene is yagR [H]

Identifier: 77458334

GI number: 77458334

Start: 2393904

End: 2396102

Strand: Reverse

Name: yagR [H]

Synonym: Pfl01_2107

Alternate gene names: 77458334

Gene position: 2396102-2393904 (Counterclockwise)

Preceding gene: 77458335

Following gene: 77458332

Centisome position: 37.22

GC content: 64.39

Gene sequence:

>2199_bases
ATGAAATTCGACACGCCCGCCACGACCAACCCGATTGATCAGCTGAACGTCATCGGCAAACCCACCGACCGCATCGAAGG
CCCGCTGAAGACCAGCGGCCAGGCGCCTTACGCCTACGAGCAACATGAAGCCGTGAAAAATCAGGCCTACGGCGTGATGG
TCGGCTCGGCCATCGCCAAGGGTCGCATCACCCGCATCGATCTGGATGCCGCCCGCGCCGCGCCGGGGGTGCTGACCATC
GTCACCGCCGCCAACGCCGGCAAGCTCGGCAAAGGCCAATACAACGCCGCGCACCTGCTGGCCGGGCCGCAAGTTCAGCA
CTATCACCAGGCTGTGGCGCTGGTGGTCGCCGAAACCTTCGAACAGGCGCGGGCCGCCGCGCAGTTGGTCAACGTCGAAT
ACGCGGCCGACAAAGGTCAGTTTGATCTGGCCAGCGTGCGCGATCAGGGTGTGGAACCGAAAGACGATCTGCCGGACGTC
AAGCACGGCGACTTCGCCAGCGCCTTCGCCGCCGCGCCGGTGCAGTTCGACCAGACCTACACCACGCCGGATCAGTCCCA
CGCAATGATGGAGCCTCACGCGACACTCGCCGCCTGGAAAGGCGATCAGGTGACGCTCTGGACTTCCAACCAGATGATCG
CCTGGAGCGTCGGCGACATCGCCGCCACCCTCGGCCTGCCCAAGGAAAACGTGCGGTTGATCTCGCCGTACATTGGTGGC
GGTTTCGGCGGCAAGCTGTTCATTCGTGCCGACGCGATCCTCGCCGCCCTCGGCGCACGCCTGGCGAACCGGCCAGTGAA
GGTCGCCCTCGCCCGTCCGCAGATCGCCAACAACACCACCCACCGCCCCGCCACCATTCAACGCATTCGCATGGGCGCCA
CGGCGGACGGCAAACTCACCGCCATCGCCCATGAAGGCTGGTCGGGCAACCTCGCCGACGGCAAGGTCGAGGTTGCAGCG
CAGCCGAGTCAGTTGCTCTACGCCGCCGAAAATCGTTTGGTGACCATGCGCCTGGCGCCGTTGGATCTGCCGGAAGGCAA
CGCCATGCGCGCGCCCGGTGAAACGCCGGGGCTGATGGCGCTGGAGATCGCCATGGACGAGATGGCCGAACAGCTCAAAC
TCGATCCGATCCAGTTCCGCATCCTCAACGACACCCAGGTTGATCCGGTGAAAACCGAGCGGCCGTTCTCCCAGCGGCGC
CTGATCGAATGCCTGCAAACCGGTGCCGAACGCTTCGGCTGGGATAAGCGCAATGCGACGCCCGGCAGCCGTCGCGAAGG
TCGCTGGCTGATCGGCATGGGCGTCGCGGCGGCGATTCGCAACAACCTGCTGGTGAAGTCCGGCGCGCGAGTACGGCTGG
AGCGCGACGGCAAGATCACCGTTGAAACCGACATGACGGACATCGGCACTGGCAGCTATACGATCATTGGTCAGACTGCA
GCGGAAATGATGGGGGTCAGCCTGGACGATGTGGTGGTGCGACTCGGCGATTCGAATTTCCCGGTGTCGGCAGGCTCCGG
CGGACAGTTCGGCGCCAACTGCTCGACCGCCGGGGTCTACGCAGCGTGCATGAAGCTGCGCGAAGCGGTCGCGGCCAAAC
TGGGCATGAACGCGGGTGAAGCGCAGTTTGTCGACGGCCTCGTGCGACTGGGCAACCAGAACGTGCCGCTGCGTGACGCC
GCGCAACACGCCGCGATCGAAGTCGAGGACAGCATCGAATTCGCCGATCTCGCCAAGCAGTACCAGCAATCGACCTTCGG
CGCGCACTTCGTCGAAGTCGCCGTCGATGCCGCCACCGGCGAAGTCCGCGTGCGCCGGATGCTCGCAGTCTGCGCCGCCG
GGCGGATTCTCAATCCGAAATCAGCCCGCAGCCAGGTGATCGGCGCCATGACCATGGGCGTTGGCGCGGCCTTGATGGAA
GAGCTCGCGGTGGACAAACGCCAGGGCTTTTTCGTCAACCATGACCTGGCCGGCTACGAAGTGCCGGTGCATGCCGACAT
CCCGCATCAGGAAGTGATTTTCCTCGATGAAACCGACCCGATTTCCTCGCCGATGAAAGCCAAGGGGGTCGGTGAACTGG
GGATTTGCGGCGTGAGTGCGGCGGTGGCGAATGCGATCTACAACGCCACGGGCGCGCGGGTGCGAGAGTATCCGATTACC
CTGGACAAGATTCTTGATGCGTTGCCCCCGATGATCTGA

Upstream 100 bases:

>100_bases
GCCTGCTCGACGGCGCCACGCCCACCGCTGATAACCAGTTCAAAGTGAAATTGGTCGAGCGCACGATTGCCTCGGTGCTG
GCCCAAGCGAGGGACGAAGC

Downstream 100 bases:

>100_bases
AACCGGTAGCGCATTAGCATGGGGTGCTAGTGCGCTAATCAGACCGGGAGATGGCTAACTCACCAGCGCAATCAACTGCT
GACGCTGCGCATCGGTCAGC

Product: xanthine dehydrogenase, molybdenum binding subunit apoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 732; Mature: 732

Protein sequence:

>732_residues
MKFDTPATTNPIDQLNVIGKPTDRIEGPLKTSGQAPYAYEQHEAVKNQAYGVMVGSAIAKGRITRIDLDAARAAPGVLTI
VTAANAGKLGKGQYNAAHLLAGPQVQHYHQAVALVVAETFEQARAAAQLVNVEYAADKGQFDLASVRDQGVEPKDDLPDV
KHGDFASAFAAAPVQFDQTYTTPDQSHAMMEPHATLAAWKGDQVTLWTSNQMIAWSVGDIAATLGLPKENVRLISPYIGG
GFGGKLFIRADAILAALGARLANRPVKVALARPQIANNTTHRPATIQRIRMGATADGKLTAIAHEGWSGNLADGKVEVAA
QPSQLLYAAENRLVTMRLAPLDLPEGNAMRAPGETPGLMALEIAMDEMAEQLKLDPIQFRILNDTQVDPVKTERPFSQRR
LIECLQTGAERFGWDKRNATPGSRREGRWLIGMGVAAAIRNNLLVKSGARVRLERDGKITVETDMTDIGTGSYTIIGQTA
AEMMGVSLDDVVVRLGDSNFPVSAGSGGQFGANCSTAGVYAACMKLREAVAAKLGMNAGEAQFVDGLVRLGNQNVPLRDA
AQHAAIEVEDSIEFADLAKQYQQSTFGAHFVEVAVDAATGEVRVRRMLAVCAAGRILNPKSARSQVIGAMTMGVGAALME
ELAVDKRQGFFVNHDLAGYEVPVHADIPHQEVIFLDETDPISSPMKAKGVGELGICGVSAAVANAIYNATGARVREYPIT
LDKILDALPPMI

Sequences:

>Translated_732_residues
MKFDTPATTNPIDQLNVIGKPTDRIEGPLKTSGQAPYAYEQHEAVKNQAYGVMVGSAIAKGRITRIDLDAARAAPGVLTI
VTAANAGKLGKGQYNAAHLLAGPQVQHYHQAVALVVAETFEQARAAAQLVNVEYAADKGQFDLASVRDQGVEPKDDLPDV
KHGDFASAFAAAPVQFDQTYTTPDQSHAMMEPHATLAAWKGDQVTLWTSNQMIAWSVGDIAATLGLPKENVRLISPYIGG
GFGGKLFIRADAILAALGARLANRPVKVALARPQIANNTTHRPATIQRIRMGATADGKLTAIAHEGWSGNLADGKVEVAA
QPSQLLYAAENRLVTMRLAPLDLPEGNAMRAPGETPGLMALEIAMDEMAEQLKLDPIQFRILNDTQVDPVKTERPFSQRR
LIECLQTGAERFGWDKRNATPGSRREGRWLIGMGVAAAIRNNLLVKSGARVRLERDGKITVETDMTDIGTGSYTIIGQTA
AEMMGVSLDDVVVRLGDSNFPVSAGSGGQFGANCSTAGVYAACMKLREAVAAKLGMNAGEAQFVDGLVRLGNQNVPLRDA
AQHAAIEVEDSIEFADLAKQYQQSTFGAHFVEVAVDAATGEVRVRRMLAVCAAGRILNPKSARSQVIGAMTMGVGAALME
ELAVDKRQGFFVNHDLAGYEVPVHADIPHQEVIFLDETDPISSPMKAKGVGELGICGVSAAVANAIYNATGARVREYPIT
LDKILDALPPMI
>Mature_732_residues
MKFDTPATTNPIDQLNVIGKPTDRIEGPLKTSGQAPYAYEQHEAVKNQAYGVMVGSAIAKGRITRIDLDAARAAPGVLTI
VTAANAGKLGKGQYNAAHLLAGPQVQHYHQAVALVVAETFEQARAAAQLVNVEYAADKGQFDLASVRDQGVEPKDDLPDV
KHGDFASAFAAAPVQFDQTYTTPDQSHAMMEPHATLAAWKGDQVTLWTSNQMIAWSVGDIAATLGLPKENVRLISPYIGG
GFGGKLFIRADAILAALGARLANRPVKVALARPQIANNTTHRPATIQRIRMGATADGKLTAIAHEGWSGNLADGKVEVAA
QPSQLLYAAENRLVTMRLAPLDLPEGNAMRAPGETPGLMALEIAMDEMAEQLKLDPIQFRILNDTQVDPVKTERPFSQRR
LIECLQTGAERFGWDKRNATPGSRREGRWLIGMGVAAAIRNNLLVKSGARVRLERDGKITVETDMTDIGTGSYTIIGQTA
AEMMGVSLDDVVVRLGDSNFPVSAGSGGQFGANCSTAGVYAACMKLREAVAAKLGMNAGEAQFVDGLVRLGNQNVPLRDA
AQHAAIEVEDSIEFADLAKQYQQSTFGAHFVEVAVDAATGEVRVRRMLAVCAAGRILNPKSARSQVIGAMTMGVGAALME
ELAVDKRQGFFVNHDLAGYEVPVHADIPHQEVIFLDETDPISSPMKAKGVGELGICGVSAAVANAIYNATGARVREYPIT
LDKILDALPPMI

Specific function: Unknown

COG id: COG1529

COG function: function code C; Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xanthine dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI71773480, Length=736, Percent_Identity=23.5054347826087, Blast_Score=145, Evalue=1e-34,
Organism=Homo sapiens, GI91823271, Length=752, Percent_Identity=24.3351063829787, Blast_Score=139, Evalue=1e-32,
Organism=Escherichia coli, GI1786478, Length=732, Percent_Identity=68.4426229508197, Blast_Score=1018, Evalue=0.0,
Organism=Escherichia coli, GI1789230, Length=755, Percent_Identity=29.0066225165563, Blast_Score=243, Evalue=2e-65,
Organism=Escherichia coli, GI1789246, Length=807, Percent_Identity=27.2614622057001, Blast_Score=202, Evalue=6e-53,
Organism=Caenorhabditis elegans, GI17540638, Length=726, Percent_Identity=23.6914600550964, Blast_Score=140, Evalue=4e-33,
Organism=Caenorhabditis elegans, GI17539860, Length=778, Percent_Identity=22.3650385604113, Blast_Score=99, Evalue=6e-21,
Organism=Caenorhabditis elegans, GI32566215, Length=646, Percent_Identity=22.1362229102167, Blast_Score=94, Evalue=2e-19,
Organism=Drosophila melanogaster, GI17737937, Length=696, Percent_Identity=25.7183908045977, Blast_Score=141, Evalue=1e-33,
Organism=Drosophila melanogaster, GI24647201, Length=730, Percent_Identity=24.3835616438356, Blast_Score=135, Evalue=1e-31,
Organism=Drosophila melanogaster, GI24647199, Length=729, Percent_Identity=23.3196159122085, Blast_Score=132, Evalue=9e-31,
Organism=Drosophila melanogaster, GI24647195, Length=759, Percent_Identity=23.9789196310935, Blast_Score=119, Evalue=7e-27,
Organism=Drosophila melanogaster, GI24647193, Length=725, Percent_Identity=24.9655172413793, Blast_Score=117, Evalue=3e-26,
Organism=Drosophila melanogaster, GI24647197, Length=734, Percent_Identity=23.9782016348774, Blast_Score=110, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000674
- InterPro:   IPR008274 [H]

Pfam domain/function: PF01315 Ald_Xan_dh_C; PF02738 Ald_Xan_dh_C2 [H]

EC number: =1.17.1.4 [H]

Molecular weight: Translated: 78049; Mature: 78049

Theoretical pI: Translated: 6.18; Mature: 6.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFDTPATTNPIDQLNVIGKPTDRIEGPLKTSGQAPYAYEQHEAVKNQAYGVMVGSAIAK
CCCCCCCCCCCHHHHEECCCCHHHCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEHHHHC
GRITRIDLDAARAAPGVLTIVTAANAGKLGKGQYNAAHLLAGPQVQHYHQAVALVVAETF
CCEEEEECHHHHCCCCEEEEEEECCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHH
EQARAAAQLVNVEYAADKGQFDLASVRDQGVEPKDDLPDVKHGDFASAFAAAPVQFDQTY
HHHHHHHHHHEEEEECCCCCEEHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCEEECCCC
TTPDQSHAMMEPHATLAAWKGDQVTLWTSNQMIAWSVGDIAATLGLPKENVRLISPYIGG
CCCCCCCCEECCCCEEEEECCCEEEEEECCCEEEEEHHHHHHHCCCCCCCCEEEECCCCC
GFGGKLFIRADAILAALGARLANRPVKVALARPQIANNTTHRPATIQRIRMGATADGKLT
CCCCEEEEEHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHEECCCCCCCCEE
AIAHEGWSGNLADGKVEVAAQPSQLLYAAENRLVTMRLAPLDLPEGNAMRAPGETPGLMA
EEEECCCCCCCCCCEEEEEECCHHHEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEE
LEIAMDEMAEQLKLDPIQFRILNDTQVDPVKTERPFSQRRLIECLQTGAERFGWDKRNAT
EHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC
PGSRREGRWLIGMGVAAAIRNNLLVKSGARVRLERDGKITVETDMTDIGTGSYTIIGQTA
CCCCCCCCEEEECCHHHHHHCCEEEECCCEEEEECCCEEEEEECCCCCCCCCEEEEECHH
AEMMGVSLDDVVVRLGDSNFPVSAGSGGQFGANCSTAGVYAACMKLREAVAAKLGMNAGE
HHHHCCCHHHHHEEECCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCH
AQFVDGLVRLGNQNVPLRDAAQHAAIEVEDSIEFADLAKQYQQSTFGAHFVEVAVDAATG
HHHHHHHHHHCCCCCCHHHHHHHCEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCC
EVRVRRMLAVCAAGRILNPKSARSQVIGAMTMGVGAALMEELAVDKRQGFFVNHDLAGYE
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCEE
VPVHADIPHQEVIFLDETDPISSPMKAKGVGELGICGVSAAVANAIYNATGARVREYPIT
EEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCC
LDKILDALPPMI
HHHHHHHHCCCC
>Mature Secondary Structure
MKFDTPATTNPIDQLNVIGKPTDRIEGPLKTSGQAPYAYEQHEAVKNQAYGVMVGSAIAK
CCCCCCCCCCCHHHHEECCCCHHHCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEHHHHC
GRITRIDLDAARAAPGVLTIVTAANAGKLGKGQYNAAHLLAGPQVQHYHQAVALVVAETF
CCEEEEECHHHHCCCCEEEEEEECCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHH
EQARAAAQLVNVEYAADKGQFDLASVRDQGVEPKDDLPDVKHGDFASAFAAAPVQFDQTY
HHHHHHHHHHEEEEECCCCCEEHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCEEECCCC
TTPDQSHAMMEPHATLAAWKGDQVTLWTSNQMIAWSVGDIAATLGLPKENVRLISPYIGG
CCCCCCCCEECCCCEEEEECCCEEEEEECCCEEEEEHHHHHHHCCCCCCCCEEEECCCCC
GFGGKLFIRADAILAALGARLANRPVKVALARPQIANNTTHRPATIQRIRMGATADGKLT
CCCCEEEEEHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHEECCCCCCCCEE
AIAHEGWSGNLADGKVEVAAQPSQLLYAAENRLVTMRLAPLDLPEGNAMRAPGETPGLMA
EEEECCCCCCCCCCEEEEEECCHHHEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEE
LEIAMDEMAEQLKLDPIQFRILNDTQVDPVKTERPFSQRRLIECLQTGAERFGWDKRNAT
EHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC
PGSRREGRWLIGMGVAAAIRNNLLVKSGARVRLERDGKITVETDMTDIGTGSYTIIGQTA
CCCCCCCCEEEECCHHHHHHCCEEEECCCEEEEECCCEEEEEECCCCCCCCCEEEEECHH
AEMMGVSLDDVVVRLGDSNFPVSAGSGGQFGANCSTAGVYAACMKLREAVAAKLGMNAGE
HHHHCCCHHHHHEEECCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCH
AQFVDGLVRLGNQNVPLRDAAQHAAIEVEDSIEFADLAKQYQQSTFGAHFVEVAVDAATG
HHHHHHHHHHCCCCCCHHHHHHHCEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCC
EVRVRRMLAVCAAGRILNPKSARSQVIGAMTMGVGAALMEELAVDKRQGFFVNHDLAGYE
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCEE
VPVHADIPHQEVIFLDETDPISSPMKAKGVGELGICGVSAAVANAIYNATGARVREYPIT
EEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCC
LDKILDALPPMI
HHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]