| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is 77458242
Identifier: 77458242
GI number: 77458242
Start: 2297622
End: 2298623
Strand: Reverse
Name: 77458242
Synonym: Pfl01_2015
Alternate gene names: NA
Gene position: 2298623-2297622 (Counterclockwise)
Preceding gene: 77458243
Following gene: 77458241
Centisome position: 35.7
GC content: 62.38
Gene sequence:
>1002_bases ATGGCGATCAAACAACTGATTAAACGCACCAGCGGCTGGCTCTATCTAAACTCGTCCGTGGGACGCAACCAGTTGCAAGG CGCAGGTGTGATCCTGATGTTGCACCGCGTGTTGTCCAATGATCGCGCCGCCGACCTGCCGCACCGCAACGAACTGTGCG TCGGGCCCAAGGCCTTCGAACACTTGCTGGTGTGGCTGCGCAAGCATTTCGATTGCGTGCCGCTGATGGAGATCCTGCAA CCCAATGCCTTGCGCACCGAGCGTCCGCAGGTGGCGCTGACCTTCGACGACGGCTGGCGCGACAACGCCGCCAACGCTTT TCCGCTGCTGCAGAAACATCAGGTGCCGGCGAGCATTTTTCTTTCCACCGATTTCATCGGCAGCCGGCAGCGTTTCTGGT GGGAAAGCATCGGCGAAACCCTGTGGGGCAGTCATGGTGAAAAAGCCCGCACGCACCTGATCGAATGCCTGCGTGCCGCC GGCCAGCCGTTGCCAGTGCTGCTGGACGACATCGATGTGGATCGCCGCAGTCTGACCCTGTTGCATTATCTGCAAAGCCT CAAGGCGCTCGATCCGAAGATACTCGAACGCCTGACCGACGAGTGCCCGCAAGAGTCGCAACCCCAGGCACTCGACTGGC ATCAGGTGCGGGCGATGGAGTCTTCCGGTCTGGTGCGTTTCGGCCCCCACGGCGCCAGTCACGCGATCCTCACCGGCCTG GACGACGTGCGCCTGAGCGAAGAAATCAGCCGCAGCAGCGATGCCCTGAACAACGGCTGCAACCGGCCGTTGCCGGTGTA TTGCTATCCCAACGGGGACAACGATGAGCGTGTGCGCGAACAGGTTGCCAATCACGATTACCCGTTCGCCCTCGGCACCG GCACCGGCCTCTATCGCGGCACAGGCGATCCGCTGAACCTGCCGCGCTTCGGTGTCAGCCAGCGCACAGCGCGCAATCCG CAACTGCTGTCGTGGCGGATCTACCGTGGAGCGCGGCCATGA
Upstream 100 bases:
>100_bases GTGACACTGGCGGGCACGAGCATCGGCCTGTGGCAGTTCCTGCGCGGCCAGCGTTATGCCCAGTGGAACCCTGACCAAAA CCGTTGAGAGGGATCGAGCC
Downstream 100 bases:
>100_bases GCCGAGGCAGTTACCTCAAGCACCTGGCGCTGAGCATGGGCACCAAATTGGCGATGATCGCCCTGCGCCTGCTGAGGAAT GTGCTGCTGGCGCGAATTCT
Product: polysaccharide deacetylase
Products: NA
Alternate protein names: Polysaccharide Deacetylase Family Protein; Glycosyl Transferase Family Polysaccharide Deacetylase
Number of amino acids: Translated: 333; Mature: 332
Protein sequence:
>333_residues MAIKQLIKRTSGWLYLNSSVGRNQLQGAGVILMLHRVLSNDRAADLPHRNELCVGPKAFEHLLVWLRKHFDCVPLMEILQ PNALRTERPQVALTFDDGWRDNAANAFPLLQKHQVPASIFLSTDFIGSRQRFWWESIGETLWGSHGEKARTHLIECLRAA GQPLPVLLDDIDVDRRSLTLLHYLQSLKALDPKILERLTDECPQESQPQALDWHQVRAMESSGLVRFGPHGASHAILTGL DDVRLSEEISRSSDALNNGCNRPLPVYCYPNGDNDERVREQVANHDYPFALGTGTGLYRGTGDPLNLPRFGVSQRTARNP QLLSWRIYRGARP
Sequences:
>Translated_333_residues MAIKQLIKRTSGWLYLNSSVGRNQLQGAGVILMLHRVLSNDRAADLPHRNELCVGPKAFEHLLVWLRKHFDCVPLMEILQ PNALRTERPQVALTFDDGWRDNAANAFPLLQKHQVPASIFLSTDFIGSRQRFWWESIGETLWGSHGEKARTHLIECLRAA GQPLPVLLDDIDVDRRSLTLLHYLQSLKALDPKILERLTDECPQESQPQALDWHQVRAMESSGLVRFGPHGASHAILTGL DDVRLSEEISRSSDALNNGCNRPLPVYCYPNGDNDERVREQVANHDYPFALGTGTGLYRGTGDPLNLPRFGVSQRTARNP QLLSWRIYRGARP >Mature_332_residues AIKQLIKRTSGWLYLNSSVGRNQLQGAGVILMLHRVLSNDRAADLPHRNELCVGPKAFEHLLVWLRKHFDCVPLMEILQP NALRTERPQVALTFDDGWRDNAANAFPLLQKHQVPASIFLSTDFIGSRQRFWWESIGETLWGSHGEKARTHLIECLRAAG QPLPVLLDDIDVDRRSLTLLHYLQSLKALDPKILERLTDECPQESQPQALDWHQVRAMESSGLVRFGPHGASHAILTGLD DVRLSEEISRSSDALNNGCNRPLPVYCYPNGDNDERVREQVANHDYPFALGTGTGLYRGTGDPLNLPRFGVSQRTARNPQ LLSWRIYRGARP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37614; Mature: 37483
Theoretical pI: Translated: 7.91; Mature: 7.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIKQLIKRTSGWLYLNSSVGRNQLQGAGVILMLHRVLSNDRAADLPHRNELCVGPKAFE CCHHHHHHHCCCEEEEECCCCCCHHCCCHHHHHHHHHHCCCCCCCCCCCCCEECCHHHHH HLLVWLRKHFDCVPLMEILQPNALRTERPQVALTFDDGWRDNAANAFPLLQKHQVPASIF HHHHHHHHHCCHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHCCCCEEE LSTDFIGSRQRFWWESIGETLWGSHGEKARTHLIECLRAAGQPLPVLLDDIDVDRRSLTL EECCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHH LHYLQSLKALDPKILERLTDECPQESQPQALDWHQVRAMESSGLVRFGPHGASHAILTGL HHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCEEECCCCCCCHHHHCC DDVRLSEEISRSSDALNNGCNRPLPVYCYPNGDNDERVREQVANHDYPFALGTGTGLYRG HHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEECCCCCCCC TGDPLNLPRFGVSQRTARNPQLLSWRIYRGARP CCCCCCCCCCCCCHHCCCCCCEEEEEECCCCCC >Mature Secondary Structure AIKQLIKRTSGWLYLNSSVGRNQLQGAGVILMLHRVLSNDRAADLPHRNELCVGPKAFE CHHHHHHHCCCEEEEECCCCCCHHCCCHHHHHHHHHHCCCCCCCCCCCCCEECCHHHHH HLLVWLRKHFDCVPLMEILQPNALRTERPQVALTFDDGWRDNAANAFPLLQKHQVPASIF HHHHHHHHHCCHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHCCCCEEE LSTDFIGSRQRFWWESIGETLWGSHGEKARTHLIECLRAAGQPLPVLLDDIDVDRRSLTL EECCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHH LHYLQSLKALDPKILERLTDECPQESQPQALDWHQVRAMESSGLVRFGPHGASHAILTGL HHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCEEECCCCCCCHHHHCC DDVRLSEEISRSSDALNNGCNRPLPVYCYPNGDNDERVREQVANHDYPFALGTGTGLYRG HHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEECCCCCCCC TGDPLNLPRFGVSQRTARNPQLLSWRIYRGARP CCCCCCCCCCCCCHHCCCCCCEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA