| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is 77458241
Identifier: 77458241
GI number: 77458241
Start: 2296306
End: 2297625
Strand: Reverse
Name: 77458241
Synonym: Pfl01_2014
Alternate gene names: NA
Gene position: 2297625-2296306 (Counterclockwise)
Preceding gene: 77458242
Following gene: 77458240
Centisome position: 35.69
GC content: 63.56
Gene sequence:
>1320_bases ATGAGCCGAGGCAGTTACCTCAAGCACCTGGCGCTGAGCATGGGCACCAAATTGGCGATGATCGCCCTGCGCCTGCTGAG GAATGTGCTGCTGGCGCGAATTCTCGGCCCCAGCGAACGGGGCCTGTTCGCCCTGCTCAGCACCCTGCCGGACCTGATCA GCGCAGCCACCAGCGGCGGCCTTAATTCGGCGGTCGGTTATCAGGCGGCCAAGCAACGGCCGATGGGCTTGTTGCTCGCG CAAGTGCTGGTGTTCGGCTGTTTGCTGGCGGGGCTGCTGACCTTGCTCGTGGTGGCGCTGGTGCGCGAGTTCGGCAGTAA ATTGGATGTGACGATGCAACTCGGTCTGCTGGCGTGGCTGTTGCTGCTGGCGGTGCCGTTGACCGTGCTCAAAAGCGGTC TGCTGACCTTGCACAATGCGTCCGGCGGTGTGGTCGCGTTCAATGCCTTGCGGCTGGTGGAATCCCTGGCGCCGCTGTTG CTGTTTCTCGCGTTGTTCTGGATGTGGAAAGAAGCGGCCCTTGAAGCGGCGCTGATCAGTTGGCTGGCCGGCATCAGTCT GGTGGTATTGGTCGGCTGGCTGTGGCTCAAACGCGCGCAGCCGTTGCAGCTGCAATGGGATCGCGCCAGCCAGAACGAAC TGCTGCGCTTCAGTGCGCGCAGCCATCCGGATCTGCTGTTCCAGCAAGTGATCCTGCGTTCCGATTACCTGTTCATTGGC GCCCTGCTCGGCAGCACAGCCCTGGGGCATTACGCGATGGCCAGCGCCGCCGCCGAGCTGCTGCTGATCGTCCCGGAAGC GGTGACCACGCCGCTGATGAAACGCCTGCTGCAACAGGACGAAGGCATGGACAAGGTCACCCCGCTGGCCCTGCGCCTGA CCGCCACGGTGATGCTCGGCGCCTGCCTGACCATGGCCGTGATCGGCGAATGGCTGATCGTCACCCTGTTCGGCGTCGCC TACCAACCGGCGTATCCGGCGCTGCTGGCGTTGCTGCCGGGGCTGCTGGGCCTGTGTTATGCCAGCATCCTGCGCCTGGA CCTGATCGGCAAGAACCGCCCCGGCACGGTGTCGCTGCTGATGGGGCTCGGTGCGCTGCTCAATCTTGCGCTGAACCTGC TGCTGATTCCGGCCTACGGCATCGTCGGTGCAGCGGCAGCGTCGTCGATTGCCTATCTGGCGGTGACCGTGGCGATGCTG GTGTTGTACTGCCGATTGAGCGGCGTGGCGTTCTGGCAAACCCTGATCATTCTGCCCAGCGACCTCACGCCGATGTGGCT GATGTTGCAGCGTCGTTTTTTACAACGGAAGTCAGCATGA
Upstream 100 bases:
>100_bases GCACAGGCGATCCGCTGAACCTGCCGCGCTTCGGTGTCAGCCAGCGCACAGCGCGCAATCCGCAACTGCTGTCGTGGCGG ATCTACCGTGGAGCGCGGCC
Downstream 100 bases:
>100_bases AAGGCCTGGCCCTGCTGTTCGGTCTCGGCCTGTCGCTGGACGCCTTCGCGGCGTCGATGCGCTGGGGCGACATTCGCGAC GGCAGCCTGTACCTGCAAGC
Product: O-antigen and teichoic acid-like export protein
Products: NA
Alternate protein names: O-Antigen And Teichoic Acid-Like Export Protein; Polysaccharide Biosynthesis Protein
Number of amino acids: Translated: 439; Mature: 438
Protein sequence:
>439_residues MSRGSYLKHLALSMGTKLAMIALRLLRNVLLARILGPSERGLFALLSTLPDLISAATSGGLNSAVGYQAAKQRPMGLLLA QVLVFGCLLAGLLTLLVVALVREFGSKLDVTMQLGLLAWLLLLAVPLTVLKSGLLTLHNASGGVVAFNALRLVESLAPLL LFLALFWMWKEAALEAALISWLAGISLVVLVGWLWLKRAQPLQLQWDRASQNELLRFSARSHPDLLFQQVILRSDYLFIG ALLGSTALGHYAMASAAAELLLIVPEAVTTPLMKRLLQQDEGMDKVTPLALRLTATVMLGACLTMAVIGEWLIVTLFGVA YQPAYPALLALLPGLLGLCYASILRLDLIGKNRPGTVSLLMGLGALLNLALNLLLIPAYGIVGAAAASSIAYLAVTVAML VLYCRLSGVAFWQTLIILPSDLTPMWLMLQRRFLQRKSA
Sequences:
>Translated_439_residues MSRGSYLKHLALSMGTKLAMIALRLLRNVLLARILGPSERGLFALLSTLPDLISAATSGGLNSAVGYQAAKQRPMGLLLA QVLVFGCLLAGLLTLLVVALVREFGSKLDVTMQLGLLAWLLLLAVPLTVLKSGLLTLHNASGGVVAFNALRLVESLAPLL LFLALFWMWKEAALEAALISWLAGISLVVLVGWLWLKRAQPLQLQWDRASQNELLRFSARSHPDLLFQQVILRSDYLFIG ALLGSTALGHYAMASAAAELLLIVPEAVTTPLMKRLLQQDEGMDKVTPLALRLTATVMLGACLTMAVIGEWLIVTLFGVA YQPAYPALLALLPGLLGLCYASILRLDLIGKNRPGTVSLLMGLGALLNLALNLLLIPAYGIVGAAAASSIAYLAVTVAML VLYCRLSGVAFWQTLIILPSDLTPMWLMLQRRFLQRKSA >Mature_438_residues SRGSYLKHLALSMGTKLAMIALRLLRNVLLARILGPSERGLFALLSTLPDLISAATSGGLNSAVGYQAAKQRPMGLLLAQ VLVFGCLLAGLLTLLVVALVREFGSKLDVTMQLGLLAWLLLLAVPLTVLKSGLLTLHNASGGVVAFNALRLVESLAPLLL FLALFWMWKEAALEAALISWLAGISLVVLVGWLWLKRAQPLQLQWDRASQNELLRFSARSHPDLLFQQVILRSDYLFIGA LLGSTALGHYAMASAAAELLLIVPEAVTTPLMKRLLQQDEGMDKVTPLALRLTATVMLGACLTMAVIGEWLIVTLFGVAY QPAYPALLALLPGLLGLCYASILRLDLIGKNRPGTVSLLMGLGALLNLALNLLLIPAYGIVGAAAASSIAYLAVTVAMLV LYCRLSGVAFWQTLIILPSDLTPMWLMLQRRFLQRKSA
Specific function: Unknown
COG id: COG2244
COG function: function code R; Membrane protein involved in the export of O-antigen and teichoic acid
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47277; Mature: 47146
Theoretical pI: Translated: 10.22; Mature: 10.22
Prosite motif: PS00024 HEMOPEXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRGSYLKHLALSMGTKLAMIALRLLRNVLLARILGPSERGLFALLSTLPDLISAATSGG CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC LNSAVGYQAAKQRPMGLLLAQVLVFGCLLAGLLTLLVVALVREFGSKLDVTMQLGLLAWL CHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH LLLAVPLTVLKSGLLTLHNASGGVVAFNALRLVESLAPLLLFLALFWMWKEAALEAALIS HHHHHHHHHHHHCHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WLAGISLVVLVGWLWLKRAQPLQLQWDRASQNELLRFSARSHPDLLFQQVILRSDYLFIG HHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHCCHHHHH ALLGSTALGHYAMASAAAELLLIVPEAVTTPLMKRLLQQDEGMDKVTPLALRLTATVMLG HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH ACLTMAVIGEWLIVTLFGVAYQPAYPALLALLPGLLGLCYASILRLDLIGKNRPGTVSLL HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH MGLGALLNLALNLLLIPAYGIVGAAAASSIAYLAVTVAMLVLYCRLSGVAFWQTLIILPS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC DLTPMWLMLQRRFLQRKSA CCCHHHHHHHHHHHHHCCC >Mature Secondary Structure SRGSYLKHLALSMGTKLAMIALRLLRNVLLARILGPSERGLFALLSTLPDLISAATSGG CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC LNSAVGYQAAKQRPMGLLLAQVLVFGCLLAGLLTLLVVALVREFGSKLDVTMQLGLLAWL CHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH LLLAVPLTVLKSGLLTLHNASGGVVAFNALRLVESLAPLLLFLALFWMWKEAALEAALIS HHHHHHHHHHHHCHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WLAGISLVVLVGWLWLKRAQPLQLQWDRASQNELLRFSARSHPDLLFQQVILRSDYLFIG HHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHCCHHHHH ALLGSTALGHYAMASAAAELLLIVPEAVTTPLMKRLLQQDEGMDKVTPLALRLTATVMLG HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH ACLTMAVIGEWLIVTLFGVAYQPAYPALLALLPGLLGLCYASILRLDLIGKNRPGTVSLL HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH MGLGALLNLALNLLLIPAYGIVGAAAASSIAYLAVTVAMLVLYCRLSGVAFWQTLIILPS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC DLTPMWLMLQRRFLQRKSA CCCHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA