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The map label for this gene is sepC [H]

Identifier: 77458082

GI number: 77458082

Start: 2112375

End: 2113769

Strand: Reverse

Name: sepC [H]

Synonym: Pfl01_1855

Alternate gene names: 77458082

Gene position: 2113769-2112375 (Counterclockwise)

Preceding gene: 77458083

Following gene: 77458080

Centisome position: 32.83

GC content: 65.45

Gene sequence:

>1395_bases
ATGAAACCGCAACTGAGCCTGTTGACCCTTTGCCTGATGCTGAGCGCCTGCGGCAGCCCCGCGCCACGCCCGGAAAGCGG
CGTGACCGCCCCCGCCGCGTGGCAGTCGCCGACCGGGCAATCGGTGGCGCAGACCAACCAGCAATGGTGGACGCATTTCG
CCAGCCCGCATCTGAACCTGCTGATCGGGCAGGCGCAAAGCGGCAGCCACGACCTGGCCGCCGCCATTGCCCGCGTACGT
CAGGCACGCGCCAGCACAGTGATCGCGGGCGGTTCGCAATTACCGGAACTAACCGCAGGCCTGAACGCCAACCGCCAGAA
ACTGCTGCGCGGCAACGGCTACAGCCAACTGGATGCCGACAGCAGCAACAAGGCCGTGGACTACTTCGACGCCAACCTCA
GCGCGAGTTATGAAATCGACTTCTGGGGCGGTCAGGCCGCCACCCGCGAGAGCGCCCGCCAGGGCCTGCGCGCGAGTGAG
TTCGATCAGGCCACCGTGGAATTGACCCTGCTCAGCGACGTCGCCAACCGCTACACCCAGGCGTTGTCATTGCAGGAACA
AAGCCGCATTGCCGCGCTGAACCTGGCCAACGCGCAGAGTGTCTTGCAACTGGTGCAGACCCGCTTCAATGCCGGCTCCG
CCACCGCGCTGGAACTGGCTCAGCAGAAAAGTCTGGTGGCCGCGCAACAGCGGCAACTGCCGACGGTGCAGCAACAGGCC
GAGGACGCGCGAATCGGTCTGGCGGCACTGCTCGGGCGACCGGTGCAAGAGCTGCCACCGAGCCTCGAGTCGTTCGACCA
ACTGCAGTGGCCACAAATCGCTGCCGGGCTGCCCAGCGACCTGCTGACCCGACGCCCGGACATCGCCCGCGCCGAAGCGC
AACTGGCAGCCGCCCGGGCAGACGTCAAAGTCGCCCGCGCCGCCATGCTGCCCAAGGTCACCCTGAGCGCGCAGCTGGGC
TCCGGCGCCAACCGCTTCGACGATGTGATGCGTAGCCCGTTCTACAACCTCACCGCCGGGCTGATCGCACCGATCTTCAA
TAACGGTCGCCTGTCCGCAGAACGCGACAAGGCGACCGCCCGCCAGGAAGAACTGCTGGAAACCTATCGCGGCGCGATCA
TCAACGGCTTCGCCGACGTGGAAAAAGCCCTGAACAGCATTCAGGGCCTGGATCAACAACGGCAATGGCAGACCGAAGAG
CTGAATCAGGCACAGACCGCGTTCAACCTCTCCCAGAGCCGCTATCAGGCCGGCGCCGAAGACTTGCTGACCGTACTGGA
AACCCAGCGCACGCTGTACGCCGCGCAGGATCTCAACGTGCAACTGCGGCTGGCGCGGATGCAGGCGAGCATTGCGCTGT
ACAAAGCGTTGGGTGGGGGTTGGGAGACGCGCTGA

Upstream 100 bases:

>100_bases
GCCTGCGCACTGATCACCGGGGTCGTTTTCGGCTTCATGCCCGCTCGCAAAGCTGCCCGGCTCGACCCGGTCACGGCCCT
CACCAGTGAATGATCGATCT

Downstream 100 bases:

>100_bases
AGAACAAAAGATCGCACGCTGCGATCTTTTGTTTTAAACCTTGGCTTTCAAATGACGCGCATACCACGGCCGTTGCGGCA
CGCGGCGGAACAGCGCGGCA

Product: RND efflux system outer membrane lipoprotein NodT

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 464; Mature: 464

Protein sequence:

>464_residues
MKPQLSLLTLCLMLSACGSPAPRPESGVTAPAAWQSPTGQSVAQTNQQWWTHFASPHLNLLIGQAQSGSHDLAAAIARVR
QARASTVIAGGSQLPELTAGLNANRQKLLRGNGYSQLDADSSNKAVDYFDANLSASYEIDFWGGQAATRESARQGLRASE
FDQATVELTLLSDVANRYTQALSLQEQSRIAALNLANAQSVLQLVQTRFNAGSATALELAQQKSLVAAQQRQLPTVQQQA
EDARIGLAALLGRPVQELPPSLESFDQLQWPQIAAGLPSDLLTRRPDIARAEAQLAAARADVKVARAAMLPKVTLSAQLG
SGANRFDDVMRSPFYNLTAGLIAPIFNNGRLSAERDKATARQEELLETYRGAIINGFADVEKALNSIQGLDQQRQWQTEE
LNQAQTAFNLSQSRYQAGAEDLLTVLETQRTLYAAQDLNVQLRLARMQASIALYKALGGGWETR

Sequences:

>Translated_464_residues
MKPQLSLLTLCLMLSACGSPAPRPESGVTAPAAWQSPTGQSVAQTNQQWWTHFASPHLNLLIGQAQSGSHDLAAAIARVR
QARASTVIAGGSQLPELTAGLNANRQKLLRGNGYSQLDADSSNKAVDYFDANLSASYEIDFWGGQAATRESARQGLRASE
FDQATVELTLLSDVANRYTQALSLQEQSRIAALNLANAQSVLQLVQTRFNAGSATALELAQQKSLVAAQQRQLPTVQQQA
EDARIGLAALLGRPVQELPPSLESFDQLQWPQIAAGLPSDLLTRRPDIARAEAQLAAARADVKVARAAMLPKVTLSAQLG
SGANRFDDVMRSPFYNLTAGLIAPIFNNGRLSAERDKATARQEELLETYRGAIINGFADVEKALNSIQGLDQQRQWQTEE
LNQAQTAFNLSQSRYQAGAEDLLTVLETQRTLYAAQDLNVQLRLARMQASIALYKALGGGWETR
>Mature_464_residues
MKPQLSLLTLCLMLSACGSPAPRPESGVTAPAAWQSPTGQSVAQTNQQWWTHFASPHLNLLIGQAQSGSHDLAAAIARVR
QARASTVIAGGSQLPELTAGLNANRQKLLRGNGYSQLDADSSNKAVDYFDANLSASYEIDFWGGQAATRESARQGLRASE
FDQATVELTLLSDVANRYTQALSLQEQSRIAALNLANAQSVLQLVQTRFNAGSATALELAQQKSLVAAQQRQLPTVQQQA
EDARIGLAALLGRPVQELPPSLESFDQLQWPQIAAGLPSDLLTRRPDIARAEAQLAAARADVKVARAAMLPKVTLSAQLG
SGANRFDDVMRSPFYNLTAGLIAPIFNNGRLSAERDKATARQEELLETYRGAIINGFADVEKALNSIQGLDQQRQWQTEE
LNQAQTAFNLSQSRYQAGAEDLLTVLETQRTLYAAQDLNVQLRLARMQASIALYKALGGGWETR

Specific function: Probable outer membrane component of the sepABC efflux pump with unknown specificity [H]

COG id: COG1538

COG function: function code MU; Outer membrane protein

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the outer membrane factor (OMF) (TC 1.B.17) family [H]

Homologues:

Organism=Escherichia coli, GI1786785, Length=471, Percent_Identity=30.9978768577495, Blast_Score=166, Evalue=2e-42,
Organism=Escherichia coli, GI2367348, Length=492, Percent_Identity=27.4390243902439, Blast_Score=120, Evalue=2e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003423
- InterPro:   IPR010131 [H]

Pfam domain/function: PF02321 OEP [H]

EC number: NA

Molecular weight: Translated: 50202; Mature: 50202

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPQLSLLTLCLMLSACGSPAPRPESGVTAPAAWQSPTGQSVAQTNQQWWTHFASPHLNL
CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEE
LIGQAQSGSHDLAAAIARVRQARASTVIAGGSQLPELTAGLNANRQKLLRGNGYSQLDAD
EEECCCCCCHHHHHHHHHHHHHHHHEEEECCCCCCHHHHCCCCCHHHHHCCCCCCCCCCC
SSNKAVDYFDANLSASYEIDFWGGQAATRESARQGLRASEFDQATVELTLLSDVANRYTQ
CCCCEEEEEECCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCCHHEEHHHHHHHHHHHHH
ALSLQEQSRIAALNLANAQSVLQLVQTRFNAGSATALELAQQKSLVAAQQRQLPTVQQQA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHH
EDARIGLAALLGRPVQELPPSLESFDQLQWPQIAAGLPSDLLTRRPDIARAEAQLAAARA
HHHHHHHHHHHCCCHHHCCCCHHHHHHCCCCHHHCCCCHHHHHCCCCHHHHHHHHHHHHH
DVKVARAAMLPKVTLSAQLGSGANRFDDVMRSPFYNLTAGLIAPIFNNGRLSAERDKATA
HHHHHHHHHCCCCEEEHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHH
RQEELLETYRGAIINGFADVEKALNSIQGLDQQRQWQTEELNQAQTAFNLSQSRYQAGAE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHHCCHH
DLLTVLETQRTLYAAQDLNVQLRLARMQASIALYKALGGGWETR
HHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKPQLSLLTLCLMLSACGSPAPRPESGVTAPAAWQSPTGQSVAQTNQQWWTHFASPHLNL
CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEE
LIGQAQSGSHDLAAAIARVRQARASTVIAGGSQLPELTAGLNANRQKLLRGNGYSQLDAD
EEECCCCCCHHHHHHHHHHHHHHHHEEEECCCCCCHHHHCCCCCHHHHHCCCCCCCCCCC
SSNKAVDYFDANLSASYEIDFWGGQAATRESARQGLRASEFDQATVELTLLSDVANRYTQ
CCCCEEEEEECCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCCHHEEHHHHHHHHHHHHH
ALSLQEQSRIAALNLANAQSVLQLVQTRFNAGSATALELAQQKSLVAAQQRQLPTVQQQA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHH
EDARIGLAALLGRPVQELPPSLESFDQLQWPQIAAGLPSDLLTRRPDIARAEAQLAAARA
HHHHHHHHHHHCCCHHHCCCCHHHHHHCCCCHHHCCCCHHHHHCCCCHHHHHHHHHHHHH
DVKVARAAMLPKVTLSAQLGSGANRFDDVMRSPFYNLTAGLIAPIFNNGRLSAERDKATA
HHHHHHHHHCCCCEEEHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHH
RQEELLETYRGAIINGFADVEKALNSIQGLDQQRQWQTEELNQAQTAFNLSQSRYQAGAE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHHCCHH
DLLTVLETQRTLYAAQDLNVQLRLARMQASIALYKALGGGWETR
HHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9037074 [H]