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The map label for this gene is ydhC [H]

Identifier: 77457990

GI number: 77457990

Start: 1958415

End: 1959140

Strand: Direct

Name: ydhC [H]

Synonym: Pfl01_1763

Alternate gene names: 77457990

Gene position: 1958415-1959140 (Clockwise)

Preceding gene: 77457985

Following gene: 77457991

Centisome position: 30.42

GC content: 62.95

Gene sequence:

>726_bases
ATGCTGGATCAACTCGATCCCCCGGTGATCAGCGGTGACGATTCCGAGACGCTCTCGGAAAACGTCTTCCGGCGCATTCA
GGCGGCCATCGTCAAAGGTGAGATCGCCCCGGGCAGCAAGATCTCCGAGCCGGAACTGGCGCGCACCTACGGCATCAGCC
GCGGGCCGCTGCGCGAGGCGATCCATCGACTGGAAGGCCAGCGCCTGCTGGTGCGCGTACCGCATGTCGGTGCGCGGGTG
GTGTCGCTGAGCCACGCCGAATTGCTCGAACTCTACGAAATCCGTGAATCCCTCGAAGGCATGGCCTGCCGTCTGGCGGC
CGAGCGCATGACCGTCGAAGAAATCGACGAACTGCGCCGGGTGCTGGAAACCCATGAGCGCGATGCGGCGTTTCAGGCTG
GCGTCGGCTACTACCAGCAGGAAGGCGATTTCGACTTTCACTACCGGATCATCCAGGGCAGCGGCAACCGCACCCTCACG
CAAATGCTCTGCGGCGAGCTCTATCAACTGGTGCGCATGTACCGCATCCAGTTTTCCACCACGCCCAACCGCCCGCGCCA
GGCCTTTGCCGAACACCACCGGATTCTTGATGCCATCGCCGACCGTGACGGCGAGCTGGCGGAATTGTTGATGCGCCGTC
ACATCGGCGCCTCGAAACGCAACATCGCCCGTCACTACCAGGACGGCGCCGACAACAAGACAGCCACTGAACGAGGTGAG
TCATGA

Upstream 100 bases:

>100_bases
AAGGCTTATTAGACGATTGTCGACAATCTGCATTTATCCTTTGACTGGTGCGGGCTGATTCGCTAGTTTTTGCCGCATTG
GATTTGAAGGTGTCGACAAT

Downstream 100 bases:

>100_bases
GTTCCAACAAGAGCACTCCAGGCCAGCGTTTCCGCGATGCGGTCGCCAGCGAACATCCGCTGCAAGTGGTCGGCGCGATC
AACGCCAACCACGCGCTGCT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MLDQLDPPVISGDDSETLSENVFRRIQAAIVKGEIAPGSKISEPELARTYGISRGPLREAIHRLEGQRLLVRVPHVGARV
VSLSHAELLELYEIRESLEGMACRLAAERMTVEEIDELRRVLETHERDAAFQAGVGYYQQEGDFDFHYRIIQGSGNRTLT
QMLCGELYQLVRMYRIQFSTTPNRPRQAFAEHHRILDAIADRDGELAELLMRRHIGASKRNIARHYQDGADNKTATERGE
S

Sequences:

>Translated_241_residues
MLDQLDPPVISGDDSETLSENVFRRIQAAIVKGEIAPGSKISEPELARTYGISRGPLREAIHRLEGQRLLVRVPHVGARV
VSLSHAELLELYEIRESLEGMACRLAAERMTVEEIDELRRVLETHERDAAFQAGVGYYQQEGDFDFHYRIIQGSGNRTLT
QMLCGELYQLVRMYRIQFSTTPNRPRQAFAEHHRILDAIADRDGELAELLMRRHIGASKRNIARHYQDGADNKTATERGE
S
>Mature_241_residues
MLDQLDPPVISGDDSETLSENVFRRIQAAIVKGEIAPGSKISEPELARTYGISRGPLREAIHRLEGQRLLVRVPHVGARV
VSLSHAELLELYEIRESLEGMACRLAAERMTVEEIDELRRVLETHERDAAFQAGVGYYQQEGDFDFHYRIIQGSGNRTLT
QMLCGELYQLVRMYRIQFSTTPNRPRQAFAEHHRILDAIADRDGELAELLMRRHIGASKRNIARHYQDGADNKTATERGE
S

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082149, Length=203, Percent_Identity=29.064039408867, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1787821, Length=229, Percent_Identity=24.8908296943231, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 27379; Mature: 27379

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDQLDPPVISGDDSETLSENVFRRIQAAIVKGEIAPGSKISEPELARTYGISRGPLREA
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCHHHHH
IHRLEGQRLLVRVPHVGARVVSLSHAELLELYEIRESLEGMACRLAAERMTVEEIDELRR
HHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
VLETHERDAAFQAGVGYYQQEGDFDFHYRIIQGSGNRTLTQMLCGELYQLVRMYRIQFST
HHHHHHHHHHHHHCCCHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCC
TPNRPRQAFAEHHRILDAIADRDGELAELLMRRHIGASKRNIARHYQDGADNKTATERGE
CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCC
S
C
>Mature Secondary Structure
MLDQLDPPVISGDDSETLSENVFRRIQAAIVKGEIAPGSKISEPELARTYGISRGPLREA
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCHHHHH
IHRLEGQRLLVRVPHVGARVVSLSHAELLELYEIRESLEGMACRLAAERMTVEEIDELRR
HHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
VLETHERDAAFQAGVGYYQQEGDFDFHYRIIQGSGNRTLTQMLCGELYQLVRMYRIQFST
HHHHHHHHHHHHHCCCHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCC
TPNRPRQAFAEHHRILDAIADRDGELAELLMRRHIGASKRNIARHYQDGADNKTATERGE
CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCC
S
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]