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The map label for this gene is flgF [H]

Identifier: 77457728

GI number: 77457728

Start: 1680166

End: 1680906

Strand: Direct

Name: flgF [H]

Synonym: Pfl01_1501

Alternate gene names: 77457728

Gene position: 1680166-1680906 (Clockwise)

Preceding gene: 77457727

Following gene: 77457729

Centisome position: 26.1

GC content: 62.21

Gene sequence:

>741_bases
GTGGACAAGTACCTTTATGTGGCAATGACCGGCGCCAGCCAGAACGCACTGGCGCAAAAGGCTCATGCCAACAACCTGGC
GAACATCTCCACCAACGGTTTTCAGCGCGACCTGGAACAGGCGCGTTCGATGCCGGTGTTCGGTGACAGCTTTCCGGCGC
GTGCGTTTGCCATGAGCGAACGGCCCGCCACCGACTTCACGCCGGGGTCGCTGGTGCAGACCGGCCGTGACCTCGACGTG
GCCGTCAGCGGCAACGGTTTCATTGCCGTGCAGAACCCCAACGGCGGCGAAAGCTACGTGCGCACCGGCAGCCTGAATAT
CGACGCCCTTGGCGTCTTGCGTGCCGGCAATGGCATGCCGGTCATGGGCAATGGCGGGCCGATCGCGGTGCCGCCGGAGC
AACAGGTGGAAGTTGGCGAAGACGGCACCATCAGCATTCGTGCGATGGGCGAAGGCCCGCGGGTCATGGCCGAAGTCGAT
CGCATCAAGCTGGTCAACCCGGACATCAAGAACATGAACAAGGGCCTGGACGGTTCGATCTACACCAAGGACGGCCAGCC
TGCGCCGGCCGATGCCAACGTCAAACTGGTGTCGGGGTTCCTGGAGTCGAGCAACGTCAATGCCGTGGAAGAGATGACGT
CGGTGCTGGCCCTGGCCAAGCAGTTCGAACTGCACGTCAAGATGATGAACACCGCCAAAGACGACGACCAGGCCATGGCT
CGGGTCTTGCAGATCAGCTAA

Upstream 100 bases:

>100_bases
ATCGGGTCCTCGGCCGCCAGAAAAAAGTTGGTCTGCAAATTGCTTATGGCTCAGCAGTACAGCGGTGGGCGGCAAACGTC
CGGCATGCAGAGGAAAGAGT

Downstream 100 bases:

>100_bases
TTATCAGAACGTCGCGCCGTAAAACAGGCGCACGAGGAGAATCGAATGCTTCCGGCTCTATGGGTTGCCAAAACCGGTCT
GTCCGCCCAGGACACCAATC

Product: flagellar basal body rod protein FlgF

Products: NA

Alternate protein names: Putative proximal rod protein [H]

Number of amino acids: Translated: 246; Mature: 246

Protein sequence:

>246_residues
MDKYLYVAMTGASQNALAQKAHANNLANISTNGFQRDLEQARSMPVFGDSFPARAFAMSERPATDFTPGSLVQTGRDLDV
AVSGNGFIAVQNPNGGESYVRTGSLNIDALGVLRAGNGMPVMGNGGPIAVPPEQQVEVGEDGTISIRAMGEGPRVMAEVD
RIKLVNPDIKNMNKGLDGSIYTKDGQPAPADANVKLVSGFLESSNVNAVEEMTSVLALAKQFELHVKMMNTAKDDDQAMA
RVLQIS

Sequences:

>Translated_246_residues
MDKYLYVAMTGASQNALAQKAHANNLANISTNGFQRDLEQARSMPVFGDSFPARAFAMSERPATDFTPGSLVQTGRDLDV
AVSGNGFIAVQNPNGGESYVRTGSLNIDALGVLRAGNGMPVMGNGGPIAVPPEQQVEVGEDGTISIRAMGEGPRVMAEVD
RIKLVNPDIKNMNKGLDGSIYTKDGQPAPADANVKLVSGFLESSNVNAVEEMTSVLALAKQFELHVKMMNTAKDDDQAMA
RVLQIS
>Mature_246_residues
MDKYLYVAMTGASQNALAQKAHANNLANISTNGFQRDLEQARSMPVFGDSFPARAFAMSERPATDFTPGSLVQTGRDLDV
AVSGNGFIAVQNPNGGESYVRTGSLNIDALGVLRAGNGMPVMGNGGPIAVPPEQQVEVGEDGTISIRAMGEGPRVMAEVD
RIKLVNPDIKNMNKGLDGSIYTKDGQPAPADANVKLVSGFLESSNVNAVEEMTSVLALAKQFELHVKMMNTAKDDDQAMA
RVLQIS

Specific function: Unknown

COG id: COG4787

COG function: function code N; Flagellar basal body rod protein

Gene ontology:

Cell location: Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flagella basal body rod proteins family [H]

Homologues:

Organism=Escherichia coli, GI1787317, Length=252, Percent_Identity=38.4920634920635, Blast_Score=164, Evalue=5e-42,
Organism=Escherichia coli, GI1787318, Length=272, Percent_Identity=28.6764705882353, Blast_Score=86, Evalue=3e-18,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010930
- InterPro:   IPR001444
- InterPro:   IPR019776
- InterPro:   IPR020013
- InterPro:   IPR012836 [H]

Pfam domain/function: PF06429 DUF1078; PF00460 Flg_bb_rod [H]

EC number: NA

Molecular weight: Translated: 26073; Mature: 26073

Theoretical pI: Translated: 4.66; Mature: 4.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKYLYVAMTGASQNALAQKAHANNLANISTNGFQRDLEQARSMPVFGDSFPARAFAMSE
CCCEEEEEEECCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEECC
RPATDFTPGSLVQTGRDLDVAVSGNGFIAVQNPNGGESYVRTGSLNIDALGVLRAGNGMP
CCCCCCCCCHHHHCCCCEEEEECCCCEEEEECCCCCCCEEEECCCCEEEEEEEECCCCCE
VMGNGGPIAVPPEQQVEVGEDGTISIRAMGEGPRVMAEVDRIKLVNPDIKNMNKGLDGSI
EECCCCCEECCCCCCEECCCCCEEEEEEECCCCEEEEEECEEEEECCCHHHHCCCCCCCE
YTKDGQPAPADANVKLVSGFLESSNVNAVEEMTSVLALAKQFELHVKMMNTAKDDDQAMA
EECCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHH
RVLQIS
HHHCCC
>Mature Secondary Structure
MDKYLYVAMTGASQNALAQKAHANNLANISTNGFQRDLEQARSMPVFGDSFPARAFAMSE
CCCEEEEEEECCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEECC
RPATDFTPGSLVQTGRDLDVAVSGNGFIAVQNPNGGESYVRTGSLNIDALGVLRAGNGMP
CCCCCCCCCHHHHCCCCEEEEECCCCEEEEECCCCCCCEEEECCCCEEEEEEEECCCCCE
VMGNGGPIAVPPEQQVEVGEDGTISIRAMGEGPRVMAEVDRIKLVNPDIKNMNKGLDGSI
EECCCCCEECCCCCCEECCCCCEEEEEEECCCCEEEEEECEEEEECCCHHHHCCCCCCCE
YTKDGQPAPADANVKLVSGFLESSNVNAVEEMTSVLALAKQFELHVKMMNTAKDDDQAMA
EECCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHH
RVLQIS
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]