| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is yoaV [H]
Identifier: 77457644
GI number: 77457644
Start: 1587478
End: 1588386
Strand: Reverse
Name: yoaV [H]
Synonym: Pfl01_1417
Alternate gene names: 77457644
Gene position: 1588386-1587478 (Counterclockwise)
Preceding gene: 77457645
Following gene: 77457642
Centisome position: 24.67
GC content: 63.92
Gene sequence:
>909_bases GTGAGCCCTGTCGATATATTCCGCATGTTGTCGCTGGCCGCCATCTGGGGCGCGAGCTTCCTGTTCATGCGCATCATCGC TCCGGCGATCGGTACGATTCCGACCGGTTTCTTCCGCGTTTCGATTGCCGCTGTCGGCCTGCTGGTGATCCTCGGGCTGA TGCGCATCAGCTGGGATTTCAAAGGCAAGCTCAAGACCGTGATGCTGCTGGGCGTGATCAACTCCGGCGTGCCGGCGACG CTGTACTCCGTCGCCGCCCAGGTGCTGCCCGCCGGATACTCGGCAATCTTCAACGCCACCACCCCGTTGATGGGCGTGTT GATCGGCGGCTTGTTCTTCAGTGAAAAACTGACGCTGGCCAAACTGGCCGGGGTGTTCCTCGGCCTGCTCGGGGTGGGCG TGCTGACTCGCGCCGGCCCGGTCGCCTTCGATCTGCAGCTGCTGATGGGTGCGGTTGCCTGTCTGCTCGCAACCACCTGC TACGGCTTCGCCGGGTTCCTCGCCCGACGCTGGCTGGATCAGGCCGGCGGGCTCGACAGCCGTCTGTCGGCGCTGGGCAG CATGCTCGGAGCAACCCTGTTTCTGTTGCCGCTGTTCGGTTACAGCGTCATCACTGCGCCGCCGGTGAGCTGGGGCGGCT GGAGTGTCTGGTTGTCGCTGCTGGGCCTGGGGCTGGGCTGCACCGCGTTTGCCTACATCATTTACTTCCGCCTGCTGAGC TCCATCGGGCCGGTGAAGTCGATGACCGTGACCTTCATGATTCCGCCGTTCGGCGTGTTGTGGGGGGCGCTGTTTCTCGA TGAGCCGCTGTCGATGGCCCACGTGTATGGCGGGGTGTTGATCGCCATTGCGCTGTGGCTGGTGTTGAAACCGGCGGCGG TGAAACCGGCAGAAATCGCCACTCGCTGA
Upstream 100 bases:
>100_bases GCGCTTCGTGATCTGATCAGAAAATTAAATGCCCGATTAACGGTTGCCATCGCCGGGGCCCTCGGCAACACTCTCGTCCC GATCAAGGAAGGAGTGGCCC
Downstream 100 bases:
>100_bases TTTGCAGATGCACGAAGGCCCGGGAGTTTCCTCCCGGGCCTTTTCATGCGCGGCGGTTACGCCGATTTACGGAACACGAA CACCAGACCGACGATGATCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 302; Mature: 301
Protein sequence:
>302_residues MSPVDIFRMLSLAAIWGASFLFMRIIAPAIGTIPTGFFRVSIAAVGLLVILGLMRISWDFKGKLKTVMLLGVINSGVPAT LYSVAAQVLPAGYSAIFNATTPLMGVLIGGLFFSEKLTLAKLAGVFLGLLGVGVLTRAGPVAFDLQLLMGAVACLLATTC YGFAGFLARRWLDQAGGLDSRLSALGSMLGATLFLLPLFGYSVITAPPVSWGGWSVWLSLLGLGLGCTAFAYIIYFRLLS SIGPVKSMTVTFMIPPFGVLWGALFLDEPLSMAHVYGGVLIAIALWLVLKPAAVKPAEIATR
Sequences:
>Translated_302_residues MSPVDIFRMLSLAAIWGASFLFMRIIAPAIGTIPTGFFRVSIAAVGLLVILGLMRISWDFKGKLKTVMLLGVINSGVPAT LYSVAAQVLPAGYSAIFNATTPLMGVLIGGLFFSEKLTLAKLAGVFLGLLGVGVLTRAGPVAFDLQLLMGAVACLLATTC YGFAGFLARRWLDQAGGLDSRLSALGSMLGATLFLLPLFGYSVITAPPVSWGGWSVWLSLLGLGLGCTAFAYIIYFRLLS SIGPVKSMTVTFMIPPFGVLWGALFLDEPLSMAHVYGGVLIAIALWLVLKPAAVKPAEIATR >Mature_301_residues SPVDIFRMLSLAAIWGASFLFMRIIAPAIGTIPTGFFRVSIAAVGLLVILGLMRISWDFKGKLKTVMLLGVINSGVPATL YSVAAQVLPAGYSAIFNATTPLMGVLIGGLFFSEKLTLAKLAGVFLGLLGVGVLTRAGPVAFDLQLLMGAVACLLATTCY GFAGFLARRWLDQAGGLDSRLSALGSMLGATLFLLPLFGYSVITAPPVSWGGWSVWLSLLGLGLGCTAFAYIIYFRLLSS IGPVKSMTVTFMIPPFGVLWGALFLDEPLSMAHVYGGVLIAIALWLVLKPAAVKPAEIATR
Specific function: Unknown
COG id: COG0697
COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 2 DUF6 domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000620 [H]
Pfam domain/function: PF00892 DUF6 [H]
EC number: NA
Molecular weight: Translated: 31856; Mature: 31725
Theoretical pI: Translated: 10.13; Mature: 10.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPVDIFRMLSLAAIWGASFLFMRIIAPAIGTIPTGFFRVSIAAVGLLVILGLMRISWDF CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCC KGKLKTVMLLGVINSGVPATLYSVAAQVLPAGYSAIFNATTPLMGVLIGGLFFSEKLTLA CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH KLAGVFLGLLGVGVLTRAGPVAFDLQLLMGAVACLLATTCYGFAGFLARRWLDQAGGLDS HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH RLSALGSMLGATLFLLPLFGYSVITAPPVSWGGWSVWLSLLGLGLGCTAFAYIIYFRLLS HHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHH SIGPVKSMTVTFMIPPFGVLWGALFLDEPLSMAHVYGGVLIAIALWLVLKPAAVKPAEIA HCCCHHHEEEEEEECCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHC TR CC >Mature Secondary Structure SPVDIFRMLSLAAIWGASFLFMRIIAPAIGTIPTGFFRVSIAAVGLLVILGLMRISWDF CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCC KGKLKTVMLLGVINSGVPATLYSVAAQVLPAGYSAIFNATTPLMGVLIGGLFFSEKLTLA CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH KLAGVFLGLLGVGVLTRAGPVAFDLQLLMGAVACLLATTCYGFAGFLARRWLDQAGGLDS HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH RLSALGSMLGATLFLLPLFGYSVITAPPVSWGGWSVWLSLLGLGLGCTAFAYIIYFRLLS HHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHH SIGPVKSMTVTFMIPPFGVLWGALFLDEPLSMAHVYGGVLIAIALWLVLKPAAVKPAEIA HCCCHHHEEEEEEECCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHC TR CC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]