| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is rapA [H]
Identifier: 77457482
GI number: 77457482
Start: 1428182
End: 1431028
Strand: Reverse
Name: rapA [H]
Synonym: Pfl01_1255
Alternate gene names: 77457482
Gene position: 1431028-1428182 (Counterclockwise)
Preceding gene: 77457484
Following gene: 77457480
Centisome position: 22.23
GC content: 64.81
Gene sequence:
>2847_bases ATGGCGCAGCAGTATCAACCGGGGCAACGCTGGATCAGTGACAGCGAAGCAGAGCTTGGTTTAGGCACCGTTCTGGCACA GGACGGCCGCTTGTTGACCGTGCTTTACCCGGCCACTGGCGAGACTCGCCAGTACGCGCTACGGAATGCGCCCCTCACCC GCGTGCGGTTTTCGCCCGGCGATTCGATCACGCACTTCGAAGGCTGGAAGATGACCGTCCAGCAAGTCGACGACGTCGAC GGCCTGATGGTCTACCACGGCCTCAACGCGCAGAACGAAGCGGTCACCCTGCCGGAAACCCAACTGTCGAACTTCATTCA GTTCCGTCTGGCCAGCGACCGTCTGTTCGCCGGCCAGATCGACCCGCTGGCGTGGTTCTCCCTGCGTTATCACACCCTGG AACACACCAGCCGCCAGTTGCAGTCCGCGCTCTGGGGCCTGGGTGGCGTACGCGCCCAACCGATCGCCCACCAGTTGCAC ATTGCCCGTGAAGTCGCCGACCGCATCGCGCCGCGCGTATTGCTGGCGGACGAAGTGGGTCTGGGCAAGACCATCGAAGC CGGTCTGGTGATCCATCGTCAGTTGCTGTCGGGCCGCGCCAACCGCGTACTGATCCTGGTGCCGGAAAACCTCCAGCACC AATGGCTGGTGGAAATGCGCCGCCGCTTCAACCTGCAGGTCGCGCTGTTCGACGAAGAACGTTTCATCGAAAGCGATGCC ACCAACCCGTTCGAAGACACCCAGCTGGCCCTGGTGGCGCTGGAGTGGCTGGTCGACGACGAAAAGGCGCAAGACGCGTT GTTCGCTGCCGGTTGGGACCTGATGGTGGTCGACGAAGCCCACCACCTGGTGTGGCACGAAGACAAAGTCAGCCCGGAAT ACTCGCTGGTCGAACAGCTGGCCGAGGTCATTCCCGGCGTGCTGCTGCTCACCGCCACCCCGGAACAACTCGGTCAGGAC AGCCACTTCGCCCGTCTGCGCCTGCTCGACCCGAACCGTTTCCATGACCTGGCCGCCTTCCGTGCCGAGAGCGAAAACTA TCGCCCGGTGGCCGAAGCCGTTCAGGAGCTGCTGGACAAGGGTCGCCTGTCGCCGGCCGCGCACAAGACCATCCACGGTT TCCTCGGCAACGAAGGTGAAGCCCTGCTCACCGCCGTCAACGATGGCGACACCGAAGCCAGCGCCCGCCTCGTGCGTGAA CTGCTCGACCGCCACGGCACCGGCCGCGTGCTGTTCCGTAACACCCGCGCCGCCGTGCAGGGTTTCCCGGAGCGCAAACT GCACCCGTACCCGCTGCCGTGCCCGGACGAATACCTCGAACTGCCGCTGGGCGAGCACGCCGAGCTGTACCCGGAAGTCA GCTTCCAGGCCCAGCCGGACGCCAGCGAAGAAGAACGCTGGTGGAAATTCGACCCGCGCGTCGAGTGGCTGATCGACCAG TTGAAAATGCTCAAGCGCACCAAAGTGCTGGTGATCTGCGCCCACGCCGAAACCGCGATGGACCTGGAAGACGCCCTGCG CGTGCGCTCCGGGATCCCGGCCACGGTGTTCCACGAAGGCATGAACATCCTCGAGCGTGACCGCGCCGCCGCCTACTTCG CCGACGAAGAGTTCGGCGCGCAGGTGTTGATCTGCTCGGAAATCGGCAGTGAAGGTCGCAACTTCCAGTTCGCCCACCAC TTGGTGCTGTTCGACCTGCCGTCGCACCCGGACCTGCTGGAGCAGCGGATCGGTCGTCTCGACCGGATCGGCCAGAAGCA CATCATCGAACTGCACGTGCCGTACCTGGAAACCAGCCCGCAAGAGCGCCTGTTCCAGTGGTACCACGAAGCCCTGAACG CGTTCCTCAACACCTGCCCGACCGGCAACGCCTTGCAGCATCAGTTCGGCCCGCGCCTGCTGCCGTTGCTCGAAGAGGCC GACGACGGCGAATGGCAAGCGCTGATCGACGAGGCGCGCACCGAGCGCGAGCGTCTGGAAGCCGAGCTGCACACCGGTCG CGACCGCCTGCTGGAACTCAACTCCGGCGGCGCCGGCGAAGGTGAGGCGCTGGTCGAGGCCATCCTCGAGCAGGACGACC AGTTCGCCCTGCCGATCTACATGGAAACCCTGTTCGACGCCTTCGGCATCGACAGCGAAGACCATTCGGAAAACGCCCTG ATCCTCAAGCCGAGCGAGAAGATGCTCGACGCCAGCTTCCCGCTGGGCGACGACGAAGGCGTGACCATCACCTACGACCG TAACCAGGCGCTGTCGCGCGAAGACATGCAGTTCATCACCTGGGAACACCCGATGGTGCAGGGCGGCATGGATCTGGTGC TGTCCGGTTCGATGGGCAACACCGCCGTCGCGCTGATCAAGAACAAGGCGCTCAAGCCGGGCACCGTGCTGCTGGAACTG CTCTACGTCAGCGAAGTGGTTGCCCCGCGTTCGCTGCAACTGGGCCGTTACCTGCCGCCGGCCGCCCTGCGCTGCCTGCT CGATGCCAACGGCAACGACCTGTCGTCGCGCGTGGCGTTCGAAACCCTCAACGATCAACTGGAAAGCGTGCCGCGCGCCA GCGCCAACAAGTTCATCCAGGCCCAGCGCGATCAGCTGACGCCACGGATCAACGCCGGTGAAGACAAGGTCACCCCGCGC CACGCCGAGCGCGTGGCCGAGGCCCGCCGCCGTCTGGCAGCCGACACCGACGAAGAACTGGCACGCCTGACCGCGTTGCA GGCGGTCAACCCGACCGTGCGCGACAGCGAACTGGACGCTCTGCGCAAGCAGCGTGAACAAGGTCTGGCAATGCTCGACA AGGCAGCGCTGCGACTGGAAGCGATCCGGGTGCTGGTGGCGGGTTAA
Upstream 100 bases:
>100_bases CCGATTGCGGTTAAAAGCCGGGCCGAGGCTCCTTATCCTTTGGCCTCGGGCCCTCATTCCGTTAAGATAGCCCGCTTTTT CAAGGTGGGAGTCAGGCAGC
Downstream 100 bases:
>100_bases ACCGCCCTGCTCCATCGCCAAAAACGAAAAGGCCCGCAGCGATGCGGGCCTTTTTGTTTGCCTCTCCGATCAAGCGGTAA CGGCCTGATTCTGCGGCTCA
Product: ATP-dependent helicase HepA
Products: NA
Alternate protein names: ATP-dependent helicase hepA [H]
Number of amino acids: Translated: 948; Mature: 947
Protein sequence:
>948_residues MAQQYQPGQRWISDSEAELGLGTVLAQDGRLLTVLYPATGETRQYALRNAPLTRVRFSPGDSITHFEGWKMTVQQVDDVD GLMVYHGLNAQNEAVTLPETQLSNFIQFRLASDRLFAGQIDPLAWFSLRYHTLEHTSRQLQSALWGLGGVRAQPIAHQLH IAREVADRIAPRVLLADEVGLGKTIEAGLVIHRQLLSGRANRVLILVPENLQHQWLVEMRRRFNLQVALFDEERFIESDA TNPFEDTQLALVALEWLVDDEKAQDALFAAGWDLMVVDEAHHLVWHEDKVSPEYSLVEQLAEVIPGVLLLTATPEQLGQD SHFARLRLLDPNRFHDLAAFRAESENYRPVAEAVQELLDKGRLSPAAHKTIHGFLGNEGEALLTAVNDGDTEASARLVRE LLDRHGTGRVLFRNTRAAVQGFPERKLHPYPLPCPDEYLELPLGEHAELYPEVSFQAQPDASEEERWWKFDPRVEWLIDQ LKMLKRTKVLVICAHAETAMDLEDALRVRSGIPATVFHEGMNILERDRAAAYFADEEFGAQVLICSEIGSEGRNFQFAHH LVLFDLPSHPDLLEQRIGRLDRIGQKHIIELHVPYLETSPQERLFQWYHEALNAFLNTCPTGNALQHQFGPRLLPLLEEA DDGEWQALIDEARTERERLEAELHTGRDRLLELNSGGAGEGEALVEAILEQDDQFALPIYMETLFDAFGIDSEDHSENAL ILKPSEKMLDASFPLGDDEGVTITYDRNQALSREDMQFITWEHPMVQGGMDLVLSGSMGNTAVALIKNKALKPGTVLLEL LYVSEVVAPRSLQLGRYLPPAALRCLLDANGNDLSSRVAFETLNDQLESVPRASANKFIQAQRDQLTPRINAGEDKVTPR HAERVAEARRRLAADTDEELARLTALQAVNPTVRDSELDALRKQREQGLAMLDKAALRLEAIRVLVAG
Sequences:
>Translated_948_residues MAQQYQPGQRWISDSEAELGLGTVLAQDGRLLTVLYPATGETRQYALRNAPLTRVRFSPGDSITHFEGWKMTVQQVDDVD GLMVYHGLNAQNEAVTLPETQLSNFIQFRLASDRLFAGQIDPLAWFSLRYHTLEHTSRQLQSALWGLGGVRAQPIAHQLH IAREVADRIAPRVLLADEVGLGKTIEAGLVIHRQLLSGRANRVLILVPENLQHQWLVEMRRRFNLQVALFDEERFIESDA TNPFEDTQLALVALEWLVDDEKAQDALFAAGWDLMVVDEAHHLVWHEDKVSPEYSLVEQLAEVIPGVLLLTATPEQLGQD SHFARLRLLDPNRFHDLAAFRAESENYRPVAEAVQELLDKGRLSPAAHKTIHGFLGNEGEALLTAVNDGDTEASARLVRE LLDRHGTGRVLFRNTRAAVQGFPERKLHPYPLPCPDEYLELPLGEHAELYPEVSFQAQPDASEEERWWKFDPRVEWLIDQ LKMLKRTKVLVICAHAETAMDLEDALRVRSGIPATVFHEGMNILERDRAAAYFADEEFGAQVLICSEIGSEGRNFQFAHH LVLFDLPSHPDLLEQRIGRLDRIGQKHIIELHVPYLETSPQERLFQWYHEALNAFLNTCPTGNALQHQFGPRLLPLLEEA DDGEWQALIDEARTERERLEAELHTGRDRLLELNSGGAGEGEALVEAILEQDDQFALPIYMETLFDAFGIDSEDHSENAL ILKPSEKMLDASFPLGDDEGVTITYDRNQALSREDMQFITWEHPMVQGGMDLVLSGSMGNTAVALIKNKALKPGTVLLEL LYVSEVVAPRSLQLGRYLPPAALRCLLDANGNDLSSRVAFETLNDQLESVPRASANKFIQAQRDQLTPRINAGEDKVTPR HAERVAEARRRLAADTDEELARLTALQAVNPTVRDSELDALRKQREQGLAMLDKAALRLEAIRVLVAG >Mature_947_residues AQQYQPGQRWISDSEAELGLGTVLAQDGRLLTVLYPATGETRQYALRNAPLTRVRFSPGDSITHFEGWKMTVQQVDDVDG LMVYHGLNAQNEAVTLPETQLSNFIQFRLASDRLFAGQIDPLAWFSLRYHTLEHTSRQLQSALWGLGGVRAQPIAHQLHI AREVADRIAPRVLLADEVGLGKTIEAGLVIHRQLLSGRANRVLILVPENLQHQWLVEMRRRFNLQVALFDEERFIESDAT NPFEDTQLALVALEWLVDDEKAQDALFAAGWDLMVVDEAHHLVWHEDKVSPEYSLVEQLAEVIPGVLLLTATPEQLGQDS HFARLRLLDPNRFHDLAAFRAESENYRPVAEAVQELLDKGRLSPAAHKTIHGFLGNEGEALLTAVNDGDTEASARLVREL LDRHGTGRVLFRNTRAAVQGFPERKLHPYPLPCPDEYLELPLGEHAELYPEVSFQAQPDASEEERWWKFDPRVEWLIDQL KMLKRTKVLVICAHAETAMDLEDALRVRSGIPATVFHEGMNILERDRAAAYFADEEFGAQVLICSEIGSEGRNFQFAHHL VLFDLPSHPDLLEQRIGRLDRIGQKHIIELHVPYLETSPQERLFQWYHEALNAFLNTCPTGNALQHQFGPRLLPLLEEAD DGEWQALIDEARTERERLEAELHTGRDRLLELNSGGAGEGEALVEAILEQDDQFALPIYMETLFDAFGIDSEDHSENALI LKPSEKMLDASFPLGDDEGVTITYDRNQALSREDMQFITWEHPMVQGGMDLVLSGSMGNTAVALIKNKALKPGTVLLELL YVSEVVAPRSLQLGRYLPPAALRCLLDANGNDLSSRVAFETLNDQLESVPRASANKFIQAQRDQLTPRINAGEDKVTPRH AERVAEARRRLAADTDEELARLTALQAVNPTVRDSELDALRKQREQGLAMLDKAALRLEAIRVLVAG
Specific function: Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on
COG id: COG0553
COG function: function code KL; Superfamily II DNA/RNA helicases, SNF2 family
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI1786245, Length=961, Percent_Identity=52.4453694068678, Blast_Score=956, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR022737 - InterPro: IPR000330 [H]
Pfam domain/function: PF00271 Helicase_C; PF12137 RapA_C; PF00176 SNF2_N [H]
EC number: 3.6.1.- [C]
Molecular weight: Translated: 106596; Mature: 106465
Theoretical pI: Translated: 4.71; Mature: 4.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQQYQPGQRWISDSEAELGLGTVLAQDGRLLTVLYPATGETRQYALRNAPLTRVRFSPG CCCCCCCHHHHCCCCCCCCCHHHEEECCCCEEEEEECCCCCHHHHHHHCCCCEEEEECCC DSITHFEGWKMTVQQVDDVDGLMVYHGLNAQNEAVTLPETQLSNFIQFRLASDRLFAGQI CCCEECCCCHHHHHHHCCCCCEEEEECCCCCCCEEECCHHHHHHHHHEEEECCCEECCCC DPLAWFSLRYHTLEHTSRQLQSALWGLGGVRAQPIAHQLHIAREVADRIAPRVLLADEVG CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCC LGKTIEAGLVIHRQLLSGRANRVLILVPENLQHQWLVEMRRRFNLQVALFDEERFIESDA CCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEECCHHHHHCCC TNPFEDTQLALVALEWLVDDEKAQDALFAAGWDLMVVDEAHHLVWHEDKVSPEYSLVEQL CCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEECCCCEEEECCCCCCHHHHHHHH AEVIPGVLLLTATPEQLGQDSHFARLRLLDPNRFHDLAAFRAESENYRPVAEAVQELLDK HHHCCCEEEEEECHHHHCCCCCEEEEEEECCCHHHHHHHHHCCCCCCCHHHHHHHHHHHC GRLSPAAHKTIHGFLGNEGEALLTAVNDGDTEASARLVRELLDRHGTGRVLFRNTRAAVQ CCCCHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEECCHHHHC GFPERKLHPYPLPCPDEYLELPLGEHAELYPEVSFQAQPDASEEERWWKFDPRVEWLIDQ CCCCCCCCCCCCCCCHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCEECCCHHHHHHHH LKMLKRTKVLVICAHAETAMDLEDALRVRSGIPATVFHEGMNILERDRAAAYFADEEFGA HHHHHCCEEEEEEECCCHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEEECCCCCCC QVLICSEIGSEGRNFQFAHHLVLFDLPSHPDLLEQRIGRLDRIGQKHIIELHVPYLETSP EEEEEECCCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCH QERLFQWYHEALNAFLNTCPTGNALQHQFGPRLLPLLEEADDGEWQALIDEARTERERLE HHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHH AELHTGRDRLLELNSGGAGEGEALVEAILEQDDQFALPIYMETLFDAFGIDSEDHSENAL HHHHCCCCCEEEECCCCCCCHHHHHHHHHCCCCCEEHHHHHHHHHHHHCCCCCCCCCCEE ILKPSEKMLDASFPLGDDEGVTITYDRNQALSREDMQFITWEHPMVQGGMDLVLSGSMGN EECCCHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEECCCHHHCCCEEEEECCCCC TAVALIKNKALKPGTVLLELLYVSEVVAPRSLQLGRYLPPAALRCLLDANGNDLSSRVAF EEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHEEECCCCCCHHHHHHH ETLNDQLESVPRASANKFIQAQRDQLTPRINAGEDKVTPRHAERVAEARRRLAADTDEEL HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHH ARLTALQAVNPTVRDSELDALRKQREQGLAMLDKAALRLEAIRVLVAG HHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHEECC >Mature Secondary Structure AQQYQPGQRWISDSEAELGLGTVLAQDGRLLTVLYPATGETRQYALRNAPLTRVRFSPG CCCCCCHHHHCCCCCCCCCHHHEEECCCCEEEEEECCCCCHHHHHHHCCCCEEEEECCC DSITHFEGWKMTVQQVDDVDGLMVYHGLNAQNEAVTLPETQLSNFIQFRLASDRLFAGQI CCCEECCCCHHHHHHHCCCCCEEEEECCCCCCCEEECCHHHHHHHHHEEEECCCEECCCC DPLAWFSLRYHTLEHTSRQLQSALWGLGGVRAQPIAHQLHIAREVADRIAPRVLLADEVG CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCC LGKTIEAGLVIHRQLLSGRANRVLILVPENLQHQWLVEMRRRFNLQVALFDEERFIESDA CCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEECCHHHHHCCC TNPFEDTQLALVALEWLVDDEKAQDALFAAGWDLMVVDEAHHLVWHEDKVSPEYSLVEQL CCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEECCCCEEEECCCCCCHHHHHHHH AEVIPGVLLLTATPEQLGQDSHFARLRLLDPNRFHDLAAFRAESENYRPVAEAVQELLDK HHHCCCEEEEEECHHHHCCCCCEEEEEEECCCHHHHHHHHHCCCCCCCHHHHHHHHHHHC GRLSPAAHKTIHGFLGNEGEALLTAVNDGDTEASARLVRELLDRHGTGRVLFRNTRAAVQ CCCCHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEECCHHHHC GFPERKLHPYPLPCPDEYLELPLGEHAELYPEVSFQAQPDASEEERWWKFDPRVEWLIDQ CCCCCCCCCCCCCCCHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCEECCCHHHHHHHH LKMLKRTKVLVICAHAETAMDLEDALRVRSGIPATVFHEGMNILERDRAAAYFADEEFGA HHHHHCCEEEEEEECCCHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEEECCCCCCC QVLICSEIGSEGRNFQFAHHLVLFDLPSHPDLLEQRIGRLDRIGQKHIIELHVPYLETSP EEEEEECCCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCH QERLFQWYHEALNAFLNTCPTGNALQHQFGPRLLPLLEEADDGEWQALIDEARTERERLE HHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHH AELHTGRDRLLELNSGGAGEGEALVEAILEQDDQFALPIYMETLFDAFGIDSEDHSENAL HHHHCCCCCEEEECCCCCCCHHHHHHHHHCCCCCEEHHHHHHHHHHHHCCCCCCCCCCEE ILKPSEKMLDASFPLGDDEGVTITYDRNQALSREDMQFITWEHPMVQGGMDLVLSGSMGN EECCCHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEECCCHHHCCCEEEEECCCCC TAVALIKNKALKPGTVLLELLYVSEVVAPRSLQLGRYLPPAALRCLLDANGNDLSSRVAF EEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHEEECCCCCCHHHHHHH ETLNDQLESVPRASANKFIQAQRDQLTPRINAGEDKVTPRHAERVAEARRRLAADTDEEL HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHH ARLTALQAVNPTVRDSELDALRKQREQGLAMLDKAALRLEAIRVLVAG HHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA