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The map label for this gene is yjbC [C]

Identifier: 77457416

GI number: 77457416

Start: 1356328

End: 1357038

Strand: Reverse

Name: yjbC [C]

Synonym: Pfl01_1189

Alternate gene names: 77457416

Gene position: 1357038-1356328 (Counterclockwise)

Preceding gene: 77457417

Following gene: 77457415

Centisome position: 21.08

GC content: 64.84

Gene sequence:

>711_bases
ATGACTGACCCGATTCGCCTCTCCAAACGCCTCATCGAGCTGGTCGGTTGCTCCCGCCGGGAGGCCGAGCTGTTCATCGA
GGGCGGCTGGGTCACCGTGGACGGCGAAGTCATCGACGAGCCGCAGTTCAAGGTCGGCGACCAGAAAGTCGAGCTCGACA
AGGATGCCAAGGCCACCGCGCCGGAGCCGGTGACTATCCTGCTCAACGTGCCGGCGGGCATGGATGTCGACAGCGCCATG
CAGTCGCTGAACGCCGAAACCCTCAGCGAAGAACACCGCTACGGCAAGCGTCCGCTGCGCGGGCACTTCCTGCGCCTGAC
CGCCAGCGCCGACCTGCAACCCAAGGCCAGCGGCCTGCTGGTGTTCACCCAGGACTGGAAGGTGCTGCGCAAGCTCACCG
CCGACGCGGCCAAGATCGAGCAGGAATACGTGGTCGAAGTCGAAGGCGACATGGTTGCCCACGGCCTCAATCGCCTGCAG
CACGGCCTCACCCACAAGGGCAAGGAGCTGCCGCCGGTCAAGGCCAGTTGGCAGAACGAAAACCGCCTGCGCTTCGCCAT
GAAGAACCCGCAGCCGGGGATCATCGCCCAGTTCTGCGAAGCGGTCGGCCTGAAGGTCATCGGCATACGCCGGATCCGCA
TCGGCGGCGTGTCCATCGGCAAGGTGCCGGTCGGCCAATGGCGCTACCTGTCCGGCAAAGAGAAATTCTAA

Upstream 100 bases:

>100_bases
GCGCGGTACGCGGCTAAAAGCCACACGGCGCAAATGCAATCGGGCTTAACCGGCCCCAGGCAGGTACAATGCCCACCCCT
TTTTTGTTACGGCCCCTGTC

Downstream 100 bases:

>100_bases
GGCTCGCAAGCCACCCTACATTTCCGGCATCGCGCCCGCGCAATGCCCACAGCGAACAATCAGGATTGCACACATGGTTC
ACAACGACGTTCTGCGCAGC

Product: RNA-binding S4

Products: NA

Alternate protein names: RNA pseudouridylate synthase; RNA-uridine isomerase [H]

Number of amino acids: Translated: 236; Mature: 235

Protein sequence:

>236_residues
MTDPIRLSKRLIELVGCSRREAELFIEGGWVTVDGEVIDEPQFKVGDQKVELDKDAKATAPEPVTILLNVPAGMDVDSAM
QSLNAETLSEEHRYGKRPLRGHFLRLTASADLQPKASGLLVFTQDWKVLRKLTADAAKIEQEYVVEVEGDMVAHGLNRLQ
HGLTHKGKELPPVKASWQNENRLRFAMKNPQPGIIAQFCEAVGLKVIGIRRIRIGGVSIGKVPVGQWRYLSGKEKF

Sequences:

>Translated_236_residues
MTDPIRLSKRLIELVGCSRREAELFIEGGWVTVDGEVIDEPQFKVGDQKVELDKDAKATAPEPVTILLNVPAGMDVDSAM
QSLNAETLSEEHRYGKRPLRGHFLRLTASADLQPKASGLLVFTQDWKVLRKLTADAAKIEQEYVVEVEGDMVAHGLNRLQ
HGLTHKGKELPPVKASWQNENRLRFAMKNPQPGIIAQFCEAVGLKVIGIRRIRIGGVSIGKVPVGQWRYLSGKEKF
>Mature_235_residues
TDPIRLSKRLIELVGCSRREAELFIEGGWVTVDGEVIDEPQFKVGDQKVELDKDAKATAPEPVTILLNVPAGMDVDSAMQ
SLNAETLSEEHRYGKRPLRGHFLRLTASADLQPKASGLLVFTQDWKVLRKLTADAAKIEQEYVVEVEGDMVAHGLNRLQH
GLTHKGKELPPVKASWQNENRLRFAMKNPQPGIIAQFCEAVGLKVIGIRRIRIGGVSIGKVPVGQWRYLSGKEKF

Specific function: Unknown

COG id: COG1187

COG function: function code J; 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790453, Length=237, Percent_Identity=25.7383966244726, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020103
- InterPro:   IPR006145
- InterPro:   IPR000748
- InterPro:   IPR018496
- InterPro:   IPR002942 [H]

Pfam domain/function: PF00849 PseudoU_synth_2; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 26258; Mature: 26127

Theoretical pI: Translated: 9.11; Mature: 9.11

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDPIRLSKRLIELVGCSRREAELFIEGGWVTVDGEVIDEPQFKVGDQKVELDKDAKATA
CCCHHHHHHHHHHHHCCCCCCCEEEEECCEEEECCEEECCCCCCCCCEEEEECCCCCCCC
PEPVTILLNVPAGMDVDSAMQSLNAETLSEEHRYGKRPLRGHFLRLTASADLQPKASGLL
CCCEEEEEECCCCCCHHHHHHHCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCEEE
VFTQDWKVLRKLTADAAKIEQEYVVEVEGDMVAHGLNRLQHGLTHKGKELPPVKASWQNE
EEECCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
NRLRFAMKNPQPGIIAQFCEAVGLKVIGIRRIRIGGVSIGKVPVGQWRYLSGKEKF
CEEEEEECCCCCCHHHHHHHHHCEEEEEEEEEEECCEEECCCCCCCEEECCCCCCC
>Mature Secondary Structure 
TDPIRLSKRLIELVGCSRREAELFIEGGWVTVDGEVIDEPQFKVGDQKVELDKDAKATA
CCHHHHHHHHHHHHCCCCCCCEEEEECCEEEECCEEECCCCCCCCCEEEEECCCCCCCC
PEPVTILLNVPAGMDVDSAMQSLNAETLSEEHRYGKRPLRGHFLRLTASADLQPKASGLL
CCCEEEEEECCCCCCHHHHHHHCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCEEE
VFTQDWKVLRKLTADAAKIEQEYVVEVEGDMVAHGLNRLQHGLTHKGKELPPVKASWQNE
EEECCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
NRLRFAMKNPQPGIIAQFCEAVGLKVIGIRRIRIGGVSIGKVPVGQWRYLSGKEKF
CEEEEEECCCCCCHHHHHHHHHCEEEEEEEEEEECCEEECCCCCCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]