| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is sufE [H]
Identifier: 77457318
GI number: 77457318
Start: 1263164
End: 1263568
Strand: Reverse
Name: sufE [H]
Synonym: Pfl01_1091
Alternate gene names: 77457318
Gene position: 1263568-1263164 (Counterclockwise)
Preceding gene: 77457319
Following gene: 77457316
Centisome position: 19.63
GC content: 63.21
Gene sequence:
>405_bases ATGAGCCTGCCGGTAGAAGCCGCCGAGGCGCTGCAAACGTTTCAGAACGCTGCCGGTTGGGAACAACGGGCGCGGCTGTT GATGCAGTTCGGTGATCGCCTGCCGCCGTTGAGCGATGCGGACAAGTGCGACGCCAACCGGGTGCACGGCTGTGAAAGCC AGGTGTGGCTGGTTGGCGAGTTGAGCGACGGCCACTGGCAATTCGCAGCGAGCAGCGATGCACGGATGATTCGCGGGTTG GTGGCGTTGCTGCTGTTGCGGGTCAACGGCTTGACCGCGAGGGAGCTGCAGCAGGTGGATCTGCCGGGCTGGTTCAATCA GTTGGGACTGTCGCGGCAGTTGTCGCCGTCGCGCAGCAATGGCTTGAATGCCGTTCTGCAGCGGATGAACGAGCTGGCGC AGTAA
Upstream 100 bases:
>100_bases AACTGGCCGGGGCCATCCGCGTGTCGCTGGCGCTGTACAACGATTCCGAGGATCTGGAGCGGTTCTTTGAGGCGCTGGAT CAGGCGTTGGAGTTGTTGCG
Downstream 100 bases:
>100_bases AGGGCTGCTGCGCAGCCCTATGCTTCAGGCCTGAGGCTTGACCCGATCCGCCGGGCGCCGAACACCCGCCACAATCTTGT CTACAGCCTTGGTCGCCGCG
Product: Fe-S metabolism associated SufE
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 134; Mature: 133
Protein sequence:
>134_residues MSLPVEAAEALQTFQNAAGWEQRARLLMQFGDRLPPLSDADKCDANRVHGCESQVWLVGELSDGHWQFAASSDARMIRGL VALLLLRVNGLTARELQQVDLPGWFNQLGLSRQLSPSRSNGLNAVLQRMNELAQ
Sequences:
>Translated_134_residues MSLPVEAAEALQTFQNAAGWEQRARLLMQFGDRLPPLSDADKCDANRVHGCESQVWLVGELSDGHWQFAASSDARMIRGL VALLLLRVNGLTARELQQVDLPGWFNQLGLSRQLSPSRSNGLNAVLQRMNELAQ >Mature_133_residues SLPVEAAEALQTFQNAAGWEQRARLLMQFGDRLPPLSDADKCDANRVHGCESQVWLVGELSDGHWQFAASSDARMIRGLV ALLLLRVNGLTARELQQVDLPGWFNQLGLSRQLSPSRSNGLNAVLQRMNELAQ
Specific function: Participates in cysteine desulfuration mediated by sufS. Cysteine desulfuration mobilizes sulfur from L-cysteine to yield L-alanine and constitutes an essential step in sulfur metabolism for biosynthesis of a variety of sulfur-containing biomolecules. Fun
COG id: COG2166
COG function: function code R; SufE protein probably involved in Fe-S center assembly
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the sufE family [H]
Homologues:
Organism=Escherichia coli, GI1787969, Length=126, Percent_Identity=33.3333333333333, Blast_Score=92, Evalue=9e-21, Organism=Escherichia coli, GI1789176, Length=120, Percent_Identity=44.1666666666667, Blast_Score=90, Evalue=4e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003808 [H]
Pfam domain/function: PF02657 SufE [H]
EC number: NA
Molecular weight: Translated: 14840; Mature: 14709
Theoretical pI: Translated: 5.71; Mature: 5.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLPVEAAEALQTFQNAAGWEQRARLLMQFGDRLPPLSDADKCDANRVHGCESQVWLVGE CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEE LSDGHWQFAASSDARMIRGLVALLLLRVNGLTARELQQVDLPGWFNQLGLSRQLSPSRSN CCCCCEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHCCCCCCCCCCCC GLNAVLQRMNELAQ CHHHHHHHHHHHCC >Mature Secondary Structure SLPVEAAEALQTFQNAAGWEQRARLLMQFGDRLPPLSDADKCDANRVHGCESQVWLVGE CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEE LSDGHWQFAASSDARMIRGLVALLLLRVNGLTARELQQVDLPGWFNQLGLSRQLSPSRSN CCCCCEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHCCCCCCCCCCCC GLNAVLQRMNELAQ CHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA