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The map label for this gene is slyD [H]

Identifier: 77457109

GI number: 77457109

Start: 1030170

End: 1030655

Strand: Direct

Name: slyD [H]

Synonym: Pfl01_0882

Alternate gene names: 77457109

Gene position: 1030170-1030655 (Clockwise)

Preceding gene: 77457105

Following gene: 77457110

Centisome position: 16.0

GC content: 60.7

Gene sequence:

>486_bases
ATGCTGATCGCCGCCAATAAGGCTGTCTCCATCGACTATACCCTGACCAACGACGCTGGTGAGGTCATCGACAGCTCCGC
CGGCGGCGCTCCGCTGGTCTACCTGCATGGCGCAGGCAACATCATCCCGGGCCTGGAAAAAGCCCTGGAAGGTAAAGAAG
TCGGCAACGATCTGGAAGTTTCCGTCGAGCCGGAAGATGCCTACGGCGAATACGCCGCTGAACTGGTCAGCACCCTGAGC
CGCAGCATGTTCGAAGGCGTTGACGAGCTGGAAGTCGGCATGCAGTTCCACGCTTCGGCGCCGGACGGCCAGATGCAGAT
CGTCACCATTCGTGACCTGGACGGCGACGACGTCACCGTCGACGGCAACCACCCGCTGGCCGGTCAGCGCCTGAACTTCA
AAGTGAAAGTCGTTGCCATCCGTGACGCCAGCCAGGAAGAAATCGCTCATGGTCACGTCCATGGCGAAGGTGGCCATCAC
CACTGA

Upstream 100 bases:

>100_bases
GGGCGCCAATCGATCCCGTCTGTCCGGGTTCTGTTCGCTTTCGGGCAAATCCTTGTTTAGACTTGTCCGTTCTTCATTCT
TATGCAAAAGGTCTCGCCCC

Downstream 100 bases:

>100_bases
TTTTCTGCGCTAAGCTTTCGAGTACTGGAGAGGCGCCCGAGGGCGCCTTTTTAGTCCGCGGCTGTCCTTGGTGGCCTCGC
CAAGTGGCTGTTTCGAGTAG

Product: FKBP-type peptidylprolyl isomerase

Products: NA

Alternate protein names: PPIase; Metallochaperone slyD [H]

Number of amino acids: Translated: 161; Mature: 161

Protein sequence:

>161_residues
MLIAANKAVSIDYTLTNDAGEVIDSSAGGAPLVYLHGAGNIIPGLEKALEGKEVGNDLEVSVEPEDAYGEYAAELVSTLS
RSMFEGVDELEVGMQFHASAPDGQMQIVTIRDLDGDDVTVDGNHPLAGQRLNFKVKVVAIRDASQEEIAHGHVHGEGGHH
H

Sequences:

>Translated_161_residues
MLIAANKAVSIDYTLTNDAGEVIDSSAGGAPLVYLHGAGNIIPGLEKALEGKEVGNDLEVSVEPEDAYGEYAAELVSTLS
RSMFEGVDELEVGMQFHASAPDGQMQIVTIRDLDGDDVTVDGNHPLAGQRLNFKVKVVAIRDASQEEIAHGHVHGEGGHH
H
>Mature_161_residues
MLIAANKAVSIDYTLTNDAGEVIDSSAGGAPLVYLHGAGNIIPGLEKALEGKEVGNDLEVSVEPEDAYGEYAAELVSTLS
RSMFEGVDELEVGMQFHASAPDGQMQIVTIRDLDGDDVTVDGNHPLAGQRLNFKVKVVAIRDASQEEIAHGHVHGEGGHH
H

Specific function: Also involved in hydrogenase metallocenter assembly, probably by participating in the nickel insertion step. This function in hydrogenase biosynthesis requires chaperone activity and the presence of the metal-binding domain, but not PPIase activity [H]

COG id: COG1047

COG function: function code O; FKBP-type peptidyl-prolyl cis-trans isomerases 2

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PPIase FKBP-type domain [H]

Homologues:

Organism=Escherichia coli, GI1789748, Length=149, Percent_Identity=48.993288590604, Blast_Score=132, Evalue=1e-32,
Organism=Escherichia coli, GI1786211, Length=142, Percent_Identity=35.9154929577465, Blast_Score=87, Evalue=6e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001179 [H]

Pfam domain/function: PF00254 FKBP_C [H]

EC number: =5.2.1.8 [H]

Molecular weight: Translated: 17038; Mature: 17038

Theoretical pI: Translated: 4.27; Mature: 4.27

Prosite motif: PS50059 FKBP_PPIASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIAANKAVSIDYTLTNDAGEVIDSSAGGAPLVYLHGAGNIIPGLEKALEGKEVGNDLEV
CEEECCCEEEEEEEEECCCHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCCCCCCCEE
SVEPEDAYGEYAAELVSTLSRSMFEGVDELEVGMQFHASAPDGQMQIVTIRDLDGDDVTV
EECCCHHHHHHHHHHHHHHHHHHHCCHHHHHCCEEEECCCCCCCEEEEEEEECCCCEEEE
DGNHPLAGQRLNFKVKVVAIRDASQEEIAHGHVHGEGGHHH
CCCCCCCCCEECEEEEEEEEECCCHHHHHCCEEECCCCCCC
>Mature Secondary Structure
MLIAANKAVSIDYTLTNDAGEVIDSSAGGAPLVYLHGAGNIIPGLEKALEGKEVGNDLEV
CEEECCCEEEEEEEEECCCHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCCCCCCCEE
SVEPEDAYGEYAAELVSTLSRSMFEGVDELEVGMQFHASAPDGQMQIVTIRDLDGDDVTV
EECCCHHHHHHHHHHHHHHHHHHHCCHHHHHCCEEEECCCCCCCEEEEEEEECCCCEEEE
DGNHPLAGQRLNFKVKVVAIRDASQEEIAHGHVHGEGGHHH
CCCCCCCCCEECEEEEEEEEECCCHHHHHCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]